CK939853

Overview
NameCK939853
Unique NameCK939853
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length507
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9171 contig Csv1_Contig9171:2..508. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK939853 vs. ExPASy Swiss-Prot
Match: SY132_ARATH (Syntaxin-132 OS=Arabidopsis thaliana GN=SYP132 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.290e-15
Identity = 43/67 (64.18%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:    1 GDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCXXXXXXXXXXXXXXXXXXKPWSSNKGA 201
            G+MLDNIESQVSSAVDHVQSGNTALQ+AK LQKNSRKWMC                  KPW  NK A
Sbjct:  239 GEMLDNIESQVSSAVDHVQSGNTALQRAKSLQKNSRKWMCIAIIILLIVVAVIVVGVLKPW-KNKSA 304
[Close]
BLAST of CK939853 vs. ExPASy Swiss-Prot
Match: SY131_ARATH (Putative syntaxin-131 OS=Arabidopsis thaliana GN=SYP131 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.335e-12
Identity = 36/67 (53.73%), Postives = 40/67 (59.70%), Query Frame = 1 
Query:    1 GDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCXXXXXXXXXXXXXXXXXXKPWSSNKGA 201
            G+MLDNIE+ VSSAVDHVQSGN  L KA K QK+SRKWMC                  KPW+   GA
Sbjct:  240 GEMLDNIENMVSSAVDHVQSGNNQLTKAVKSQKSSRKWMCIAILILLIIIIITVISVLKPWTQKNGA 306
The following BLAST results are available for this feature:
BLAST of CK939853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SY132_ARATH1.290e-1564.18Syntaxin-132 OS=Arabidopsis thaliana GN=SYP132 PE=... [more]
SY131_ARATH1.335e-1253.73Putative syntaxin-131 OS=Arabidopsis thaliana GN=S... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004744_G07 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IVF_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939853 ID=CK939853; Name=CK939853; organism=Citrus sinensis; type=EST; length=507bp
GGGGACATGCTGGACAATATAGAATCTCAGGTGTCAAGTGCTGTAGATCA
CGTGCAGTCAGGCAATACTGCCCTCCAAAAGGCGAAAAAGCTACAGAAGA
ACTCCAGGAAATGGATGTGCATTGCCATCATCATCCTTCTCATCATTGTT
GCAATCATAGTTGTTGCGGTAATCAAGCCATGGAGTAGCAACAAAGGTGC
TTAGCTGCTCGACATTTGTTTGTATAGATATGTGTTTTGGTCAATCCGTC
AATGGTCATTTTCCTTTTTTTTAACCCTTCCCGCCAATTTCTGTCATTTG
AGTTCCATATTCCAATCCTGTAGCTCTTTCCTTCCCTCCCTCACCCTTTT
CTGATCAAGTCAACTCTGTGTCATGCGATTTTAACTGAAGTATATATTTC
TATATTCTTTGACATACTTTATGTAACATTTGAATTTGTTTGGCTTTTAA
ATGAATTGTTTCATATCGAAAAAAAAGAAAAAAATGAAAAAANNNNAAAA
AAAAAAA
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