CK939843

Overview
NameCK939843
Unique NameCK939843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK939843_ssr459 microsatellite CK939843_ssr459:459..470. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13803 contig Csv1_Contig13803:6..658. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939843 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.471e-32
Identity = 59/97 (60.82%), Postives = 79/97 (81.44%), Query Frame = 1
Query:  118 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGVARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 408
            P+  AITCGQV+++LAPCIP++R GG  PP  CC+G+R++N +ARTTPDRQAACNCLK+   ++ G+ PN AA LP +CGV IPY+ISPST+C+ V+
Sbjct:   22 PIAQAITCGQVSSNLAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117          
BLAST of CK939843 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.627e-32
Identity = 61/96 (63.54%), Postives = 78/96 (81.25%), Query Frame = 1
Query:  121 VTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGVARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 408
            V +AITCGQVT+SLAPCI ++R+GG  PP  CC+G+R++NG+ARTT DRQ ACNCLK   G+I G+ PN AAGLP +CGV +PYKIS ST+C+ V+
Sbjct:   21 VAHAITCGQVTSSLAPCIGYVRSGGAVPPA-CCNGIRTINGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CK939843 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.898e-31
Identity = 62/97 (63.92%), Postives = 74/97 (76.29%), Query Frame = 1
Query:  118 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGVARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 408
            P T A++CGQV++SLAPCI +L  GG  PP  CCSGV+SLN  A+TTPDRQAAC CLK AY +I G+    AA  P +CGV IPYKISPSTDCS+V+
Sbjct:   21 PYTEALSCGQVSSSLAPCISYLTKGGAVPPA-CCSGVKSLNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          
BLAST of CK939843 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.438e-30
Identity = 61/92 (66.30%), Postives = 74/92 (80.43%), Query Frame = 1
Query:  133 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGVARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 408
            ITCGQV++SLAPCI +LR GG   P  CC+GVRSLN  A+TT DRQAACNCLK A+ +I+G+  N+AAGLP +CGV +PYKISPSTDC  V+
Sbjct:    1 ITCGQVSSSLAPCINYLRAGG-VVPANCCNGVRSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of CK939843 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.138e-30
Identity = 57/92 (61.96%), Postives = 75/92 (81.52%), Query Frame = 1
Query:  133 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGVARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 408
            ITCGQV+++LAPCIP++R GG  PP  CC+G+R++N +ARTTPDRQAACNCLK+   ++ G+ PN AA LP +CGV IPYKIS ST+C+ V+
Sbjct:    1 ITCGQVSSALAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCATVK 91          
BLAST of CK939843 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.713e-29
Identity = 55/96 (57.29%), Postives = 76/96 (79.17%), Query Frame = 1
Query:  121 VTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGVARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 408
            V +AITC QV+A+LAPCI ++R+GG  PP  CC+G++++NG+A+TTPDRQAACNCLK   G++ G+ P  A  LP +CGV +PYKIS ST+C+ V+
Sbjct:   21 VAHAITCSQVSANLAPCINYVRSGGAVPPA-CCNGIKTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CK939843 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 3.543e-29
Identity = 57/92 (61.96%), Postives = 74/92 (80.43%), Query Frame = 1
Query:  133 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGVARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 408
            ITCGQV++SLAPCI ++R GG  PP  CC+G+R++N +ARTTPDR+ ACNCLK+  G+I G+ PN AA LP +CGV IPYKIS ST+C+ V+
Sbjct:    1 ITCGQVSSSLAPCIGYVRGGGAVPPA-CCNGIRNVNNLARTTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCATVK 91          
BLAST of CK939843 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.346e-28
Identity = 53/97 (54.64%), Postives = 75/97 (77.32%), Query Frame = 1
Query:  118 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGVARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 408
            P+  A+TCGQV+++LAPCI ++R GG  PP  CC+G+R++N +A+TT DRQ ACNCLK+   ++ G+  N AA LP +CGV +PYKISPST+C+ V+
Sbjct:   22 PIAQALTCGQVSSNLAPCIAYVRGGGAVPPA-CCNGIRNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117          
BLAST of CK939843 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.726e-28
Identity = 54/92 (58.70%), Postives = 74/92 (80.43%), Query Frame = 1
Query:  133 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGVARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 408
            ITCGQV+++LAPCI +++ GG  PP  CC+G+R++N +ARTT DR+AACNCLK+  G+I G+ PN AA LP +CGV +PYKIS ST+C+ V+
Sbjct:    1 ITCGQVSSNLAPCINYVKGGGAVPPA-CCNGIRNVNNLARTTADRRAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVPYKISASTNCATVK 91          
BLAST of CK939843 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.488e-27
Identity = 61/97 (62.89%), Postives = 69/97 (71.13%), Query Frame = 1
Query:  118 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGVARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 408
            P   AITCGQVT++LAPC+ +LR  G  P   CC GV++L   ARTT DRQ AC CLK A G I GI    AAGLPS CGV IPYKISPSTDCS+V+
Sbjct:   20 PCAEAITCGQVTSNLAPCLAYLRNTG--PLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          
The following BLAST results are available for this feature:
BLAST of CK939843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
NLTP1_PRUDU4.471e-3260.82Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP_MALDO7.627e-3263.54Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP_HELAN2.898e-3163.92Non-specific lipid-transfer protein OS=Helianthus ... [more]
LTP1_MORNI1.438e-3066.30Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP1_PRUPE7.138e-3061.96Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP_PYRCO2.713e-2957.29Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP1_PRUAR3.543e-2961.96Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP_PRUAV1.346e-2854.64Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP1_PRUDO8.726e-2858.70Non-specific lipid-transfer protein 1 OS=Prunus do... [more]
NLTP1_TOBAC1.488e-2762.89Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004744_G11 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IVF_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939843 ID=CK939843; Name=CK939843; organism=Citrus sinensis; type=EST; length=653bp
AAGCTTGTAAACAGAACCTGATAACTAGCTATAACCAAGCAAAAGCCTCC
CTGAAGAATCCTCATGGCTGCTCTTAAGCTTGTTTGTGCTTTGCTTTTGT
GCATTCTGGTGACTGCCCCGGTGACTAATGCCATAACATGCGGGCAGGTG
ACAGCCTCCTTGGCTCCATGCATCCCTTTCTTGAGAACTGGAGGGCGTTT
TCCTCCACCGCCATGCTGTAGCGGCGTCAGGTCTCTCAACGGCGTCGCCA
GAACCACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAACGAGCTTAC
GGAACAATCCGCGGCATCAAACCTAATGTTGCCGCTGGCCTTCCTAGTCA
ATGTGGAGTCAGAATTCCTTACAAGATCAGCCCCAGCACCGACTGCTCTA
GGGTCAGGTGAAGTTGAGTTCGAGCTCTGTGACTTTCCAAGTATGATTGA
CTGAGAAGAATAAATAAATAAAGAATATCTATGTTAATTTCTTTGTCCGA
ACGAGTCTCCACTTGTATGAGTTTCACTCTCATGTCATGTTTGTATATTT
GCTTTTTATGTCATATTAAATATGTAAACGCGATCTGTGTTTTGAGTGAT
TAATTATAGTTATTTTGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA
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