CK939838

Overview
NameCK939838
Unique NameCK939838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK939838_ssr60 microsatellite CK939838_ssr60:60..69. BLAST: Citrus ESTs to Prunus persica proteins V1
CK939838_ssr617 microsatellite CK939838_ssr617:617..628. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CML37_ARATH (Calcium-binding protein CML37 OS=Arabidopsis thaliana GN=CML37 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.018e-27
Identity = 75/193 (38.86%), Postives = 110/193 (56.99%), Query Frame = 1
Query:  271 QSSFERLRRKLS---------FSPKTKKADNKEGSLSLSLVLKXXXXXXXXXXXXLQKKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXX-LRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            +SS  RL +K+S            +++ + N  GS SL++                 +  F++ D N DG+I+  ELQSC+  +GG    ++S  + E  +++SD++GDG +DF+EFLKLM             L++AF +YVM+G   IT ASL+R L+RLG  ES ++D CK MIR FD N DGVLSF+EF
Sbjct:    8 KSSLSRLYKKVSSKRSESSRNLEDESRTSSNSSGSSSLNV--------------NELRTVFDYMDANSDGKISGEELQSCVSLLGG----ALSSREVEEVVKTSDVDGDGFIDFEEFLKLMEGEDGSDEERRKELKEAFGMYVMEGEEFITAASLRRTLSRLG--ESCTVDACKVMIRGFDQNDDGVLSFDEF 180          
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CML38_ARATH (Calcium-binding protein CML38 OS=Arabidopsis thaliana GN=CML38 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.415e-25
Identity = 73/184 (39.67%), Postives = 104/184 (56.52%), Query Frame = 1
Query:  271 QSSFERLRRKLSFSPKTKKADNKEGSLSLSLVLKXXXXXXXXXXXXLQKKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEFS 822
            QSSF++L RKLS      K ++  G +      +              +  F++ D N DGRI+  ELQ   MT+G      +S  +A AA++ SD +GDG+LDF+EF +L+            L+ AF LY+ +G + ITP SLK ML +LG  ES++ DDC+ MI  FD+N DGVLSF+EF+
Sbjct:    8 QSSFKKLCRKLS-----PKREDSAGEI------QQHNSSNGEDKNRELEAVFSYMDANRDGRISPEELQKSFMTLGE----QLSDEEAVAAVRLSDTDGDGMLDFEEFSQLIKVDDEEEKKME-LKGAFRLYIAEGEDCITPRSLKMMLKKLG--ESRTTDDCRVMISAFDLNADGVLSFDEFA 173          
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CML39_ARATH (Calcium-binding protein CML39 OS=Arabidopsis thaliana GN=CML39 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.093e-24
Identity = 61/135 (45.19%), Postives = 86/135 (63.70%), Query Frame = 1
Query:  424 FNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXX--LRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEFS 822
            F + D N DGRI+A EL+    T+G      +S  +AEAA++ SD++GDG+LD +EF  L+              + +AF +Y+ DG + ITP SLK ML +LG  ES++ DDCK MI+ FD+N DGVLSF+EF+
Sbjct:   27 FAYMDANRDGRISAEELKKSFKTLGE----QMSDEEAEAAVKLSDIDGDGMLDINEFALLIKGNDEFTEEEKKRKIMEAFRMYIADGEDCITPGSLKMMLMKLG--ESRTTDDCKVMIQAFDLNADGVLSFDEFA 155          
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CML31_ORYSJ (Probable calcium-binding protein CML31 OS=Oryza sativa subsp. japonica GN=CML31 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.005e-23
Identity = 63/135 (46.67%), Postives = 83/135 (61.48%), Query Frame = 1
Query:  424 FNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXX---LRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            F  FD +GDGRI+AAEL+ C+ T  G     +S  +A   + S D +GDG+L   EF++L+               LR+AF +Y M+G   ITP SL+RML RLG    + IDDC+AMI  FD+NGDGVLSF+EF
Sbjct:   16 FATFDHDGDGRISAAELRLCMKTTLGE---EVSDEEAGQLVASVDADGDGLLCEAEFVRLVQAAEVEEEDERRGTGLREAFGMYEMEGEGCITPTSLRRMLRRLG--SDQDIDDCRAMICRFDLNGDGVLSFDEF 145          
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CML19_ORYSJ (Putative calcium-binding protein CML19 OS=Oryza sativa subsp. japonica GN=CML19 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.024e-22
Identity = 59/137 (43.07%), Postives = 86/137 (62.77%), Query Frame = 1
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKL--MXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            ++ F+ FD + DG+I+AAEL+ C+    G     +S  +AEA + S+D + DG+LD +EF KL               L +AF +Y M+G   ITPASLKRML++LG    + I++C+ MI  FD++GDGV+SFEEF
Sbjct:    9 RRVFSAFDRDADGKISAAELRLCMKAALGE---DMSAEEAEALVSSADTDDDGLLDEEEFTKLAVQLEMGDEEERCRGLMEAFRMYEMEGEGRITPASLKRMLSKLG--SHQGIEECQTMICRFDLDGDGVISFEEF 140          
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CML25_ORYSJ (Probable calcium-binding protein CML25/26 OS=Oryza sativa subsp. japonica GN=CML25 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.214e-20
Identity = 56/137 (40.88%), Postives = 85/137 (62.04%), Query Frame = 1
Query:  424 FNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLR---DAFALYVMDGSNS-ITPASLKRMLTRLGLGESK-SIDDCKAMIRPFDINGDGVLSFEEF 819
            F  FD++GDG+++A+EL+ C+    G     +S  +A A + ++D +GDG+LD  EF++L             LR   +AF +Y  +   + ITPASL+RML RLG    +  +++C+AMI  FD+NGDGVLSF+EF
Sbjct:    9 FAAFDKDGDGKVSASELRGCMAAALGE---EVSEEEAAAILATADTDGDGLLDHHEFMRLSAAHQLQEPAEESLRCLREAFDMYAEEEETAVITPASLRRMLRRLGSEHQRLEMEECRAMICRFDLNGDGVLSFDEF 142          
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CML23_ORYSJ (Putative calcium-binding protein CML23 OS=Oryza sativa subsp. japonica GN=CML23 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.084e-19
Identity = 55/143 (38.46%), Postives = 85/143 (59.44%), Query Frame = 1
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXX--------LRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            ++ F  FD++GDG+I+A EL+ C+    G     +   + +A +  +D +GDG+LD +EF++L+                    LR+AFA+Y M+G   ITP SLK ML++LG      + +C+AMI  FD+NGDGVL+F+EF
Sbjct:    8 RRVFGSFDQDGDGKISATELRLCVKASLGE---DMPDEEVQALMALADTDGDGLLDEEEFVRLVTEMEADGDEEEDDDDETCRCLREAFAMYEMEGRGCITPLSLKLMLSKLGT--HLDVAECQAMICRFDMNGDGVLTFDEF 145          
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CML7_ARATH (Calmodulin-like protein 7 OS=Arabidopsis thaliana GN=CML7 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.611e-18
Identity = 52/138 (37.68%), Postives = 79/138 (57.25%), Query Frame = 1
Query:  415 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAA--IQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXX-LRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            K+ F  FD+NGDG IT  EL   L ++G      I + D E    I+  D+NGDG +D DEF +L              +++AF ++  +G   IT   LK +L+ LGL + K++DDCK MI+  D++GDG ++++EF
Sbjct:    7 KRVFQMFDKNGDGTITGKELSETLRSLG------IYIPDKELTQMIEKIDVNGDGCVDIDEFGELYKTIMDEEDEEEEDMKEAFNVFDQNGDGFITVDELKAVLSSLGLKQGKTLDDCKKMIKKVDVDGDGRVNYKEF 138          
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CML2_ARATH (Calmodulin-like protein 2 OS=Arabidopsis thaliana GN=CML2 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.453e-18
Identity = 45/134 (33.58%), Postives = 74/134 (55.22%), Query Frame = 1
Query:  418 KAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            + F  FD+NGDG+I   EL+    +VG    + +   +    I   D+NGDG +D DEF  L             +R+AF ++  +G   IT   L+ +L  +GL + ++++DCK MI   D++GDG+++F+EF
Sbjct:    8 RVFQMFDKNGDGKIAKNELKDFFKSVG----IMVPENEINEMIAKMDVNGDGAMDIDEFGSLYQEMVEEKEEEEDMREAFRVFDQNGDGFITDEELRSVLASMGLKQGRTLEDCKKMISKVDVDGDGMVNFKEF 137          
BLAST of CK939838 vs. ExPASy Swiss-Prot
Match: CML3_ARATH (Calmodulin-like protein 3 OS=Arabidopsis thaliana GN=CML3 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.210e-17
Identity = 48/134 (35.82%), Postives = 73/134 (54.48%), Query Frame = 1
Query:  418 KAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEEF 819
            + F  FD NGDG+IT  EL   L  +G    + I   D    I+  DLNGDG +D +EF  L             +R+AF ++  +    IT   L+ +L  LGL + ++++DCK MI   D++GDG+++F+EF
Sbjct:    8 RIFQMFDRNGDGKITKQELNDSLENLG----IYIPDKDLVQMIEKIDLNGDGYVDIEEFGGLYQTIMEERDEEEDMREAFNVFDQNRDGFITVEELRSVLASLGLKQGRTLEDCKRMISKVDVDGDGMVNFKEF 137          
The following BLAST results are available for this feature:
BLAST of CK939838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
CML37_ARATH4.018e-2738.86Calcium-binding protein CML37 OS=Arabidopsis thali... [more]
CML38_ARATH6.415e-2539.67Calcium-binding protein CML38 OS=Arabidopsis thali... [more]
CML39_ARATH7.093e-2445.19Calcium-binding protein CML39 OS=Arabidopsis thali... [more]
CML31_ORYSJ6.005e-2346.67Probable calcium-binding protein CML31 OS=Oryza sa... [more]
CML19_ORYSJ1.024e-2243.07Putative calcium-binding protein CML19 OS=Oryza sa... [more]
CML25_ORYSJ6.214e-2040.88Probable calcium-binding protein CML25/26 OS=Oryza... [more]
CML23_ORYSJ3.084e-1938.46Putative calcium-binding protein CML23 OS=Oryza sa... [more]
CML7_ARATH2.611e-1837.68Calmodulin-like protein 7 OS=Arabidopsis thaliana ... [more]
CML2_ARATH4.453e-1833.58Calmodulin-like protein 2 OS=Arabidopsis thaliana ... [more]
CML3_ARATH2.210e-1735.82Calmodulin-like protein 3 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004744_H01 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IVF_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939838 ID=CK939838; Name=CK939838; organism=Citrus sinensis; type=EST; length=856bp
GGGGATAATAAAAAAAAACAATATCATCTTATTCCCTCTTGTCATTTTTG
GAGCAGGTGTATATATATAGCCTTTCGCAGCACACACAGTTGAACAACGT
AACCTTAATTTCGTTCTCATCCATTAGTGGTCCTAATTCCAAAGTTTTGC
GATCAGTTGTTTCTCTTGTTGATTTCATCAAGTGCTAGAGCTGTCATCTC
AGATTCAAAAAAGCCAATCATAATCATGAAGTCTGAGGCCGCTACGGCCC
ATAGCCATGGAGGTAGAGGACAATCTTCTTTTGAAAGATTACGTAGAAAA
TTGTCATTCTCCCCAAAGACAAAGAAGGCAGACAACAAGGAGGGCTCTCT
TTCACTTTCACTTGTCTTAAAGGACGAAACTGAAAGCAGCAGCGGGAGCG
ACGGGGAGCTTCAGAAGAAGGCGTTCAACTTCTTTGACGAGAACGGAGAT
GGAAGGATAACCGCAGCAGAGTTACAGAGCTGTTTAATGACGGTTGGCGG
AGGCGGGGAACTCTCCATCTCCGTGGCTGATGCCGAAGCTGCCATTCAAT
CATCCGATTTAAACGGAGATGGGGTATTGGACTTCGATGAGTTTCTGAAG
CTGATGGAGGGTAATCAGGAGGAGGAGGAGAAGAACTGCGAGCTCAGGGA
TGCTTTTGCGCTCTACGTCATGGATGGTTCCAATAGCATCACCCCGGCTA
GTCTCAAGAGGATGCTTACCCGTCTGGGTCTCGGTGAGTCCAAGTCCATT
GATGACTGTAAAGCTATGATCAGACCCTTTGATATCAACGGTGATGGCGT
CCTCAGCTTTGAAGAGTTCTCTTTAATGATGCACTAATTCTAGCTATTAT
TTCTCT
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