CK939837

Overview
NameCK939837
Unique NameCK939837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2225 contig Csv1_Contig2225:1..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939837 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 1.458e-82
Identity = 143/148 (96.62%), Postives = 148/148 (100.00%), Query Frame = 2
Query:  206 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTRKYAMG 649
            MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPY+GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPN+NSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK+D+AKYESTARSWT+KYAMG
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 148          
BLAST of CK939837 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 305.064 bits (780), Expect = 3.248e-82
Identity = 144/148 (97.30%), Postives = 147/148 (99.32%), Query Frame = 2
Query:  206 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTRKYAMG 649
            MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPS+SPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK+DK KYESTARSWT+KYAMG
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARSWTQKYAMG 148          
BLAST of CK939837 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 5.540e-82
Identity = 143/148 (96.62%), Postives = 147/148 (99.32%), Query Frame = 2
Query:  206 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTRKYAMG 649
            MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPY+GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK+DK KYESTAR+WT+KYAMG
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARTWTQKYAMG 148          
BLAST of CK939837 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 7.236e-82
Identity = 142/148 (95.95%), Postives = 148/148 (100.00%), Query Frame = 2
Query:  206 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTRKYAMG 649
            MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP+DSPYAGGVFLV+IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK+D+AKYE+TARSWT+KYAMG
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 148          
BLAST of CK939837 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 3.591e-81
Identity = 140/148 (94.59%), Postives = 148/148 (100.00%), Query Frame = 2
Query:  206 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTRKYAMG 649
            MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP++SPY+GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK+D+AKYE+TAR+WT+KYAMG
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARNWTQKYAMG 148          
BLAST of CK939837 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 295.434 bits (755), Expect = 2.573e-79
Identity = 136/148 (91.89%), Postives = 147/148 (99.32%), Query Frame = 2
Query:  206 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTRKYAMG 649
            MASKRILKELKDLQKDPP++CSAGPVAEDMFHWQATIMGP +SPYAGGVFLV+IHFPPDYPFKPPKV+F+TKV+HPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK+D++KYESTARSWT+KYAMG
Sbjct:    1 MASKRILKELKDLQKDPPSNCSAGPVAEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKTKVYHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYESTARSWTQKYAMG 148          
BLAST of CK939837 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 4.543e-76
Identity = 130/148 (87.84%), Postives = 142/148 (95.95%), Query Frame = 2
Query:  206 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTRKYAMG 649
            MASKRI KEL+DLQ+DPP SCSAGP  +DMF WQATIMGP+DSP+AGGVFLVTIHFPPDYPFKPPKVAFRTKV+HPNINSNGSICLDILKEQWSPALT+SKVLLSICSLLTDPNPDDPLVPEIAH+YK+D+ KYESTA+SWT+KYAMG
Sbjct:    1 MASKRINKELRDLQRDPPVSCSAGPTGDDMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPNINSNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLVPEIAHIYKTDRVKYESTAQSWTQKYAMG 148          
BLAST of CK939837 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.909e-74
Identity = 126/147 (85.71%), Postives = 140/147 (95.24%), Query Frame = 2
Query:  206 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTRKYAM 646
            MA++RILKELK+LQ+DPP SCSAGP  EDMFHWQATIMGP++SPY+GGVFLV IHFPPDYPFKPPKV FRTKVFHPNINSNG+ICLDILK+QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAH+YK+DK KYE+ ARSWT+KYA+
Sbjct:    1 MATRRILKELKELQRDPPVSCSAGPTGEDMFHWQATIMGPNESPYSGGVFLVNIHFPPDYPFKPPKVVFRTKVFHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHIYKTDKTKYEAMARSWTQKYAL 147          
BLAST of CK939837 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 264.233 bits (674), Expect = 6.353e-70
Identity = 120/147 (81.63%), Postives = 135/147 (91.84%), Query Frame = 2
Query:  206 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTRKYAM 646
            MA KRI KEL DL +DPP+SCSAGPV ED+FHWQATIMGPSDSPYAGGVF + IHFP DYPFKPPKV F T+++HPNINSNGSICLDIL++QWSPALTISKVLLSICS+LTDPNPDDPLVPEIAH+YK+ +A+YESTAR WTRKYA+
Sbjct:    1 MALKRINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPSDSPYAGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDDPLVPEIAHVYKTARAQYESTAREWTRKYAI 147          
BLAST of CK939837 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 2.414e-69
Identity = 117/147 (79.59%), Postives = 135/147 (91.84%), Query Frame = 2
Query:  206 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTRKYAM 646
            MA KRI KEL DL +DPP+SCSAGPV ED+FHWQATIMGP DSPY+GGVF + IHFP DYPFKPPKV F T+++HPNINSNGSICLDIL++QWSPALTISKVLLSICS+LTDPNPD+PLVPEIAH+YK+D+A+YE+TAR WTRKYA+
Sbjct:    1 MAFKRINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPGDSPYSGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDEPLVPEIAHVYKTDRARYEATAREWTRKYAI 147          
The following BLAST results are available for this feature:
BLAST of CK939837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBC28_ARATH1.458e-8296.62Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC10_ARATH3.248e-8297.30Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC9_ARATH5.540e-8296.62SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC4_SOLLC7.236e-8295.95Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC8_ARATH3.591e-8194.59Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC11_ARATH2.573e-7991.89Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBC30_ARATH4.543e-7687.84Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC29_ARATH1.909e-7485.71Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBC1_MAGGR6.353e-7081.63Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]
UBC1_COLGL2.414e-6979.59Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004744_G12 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IVF_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939837 ID=CK939837; Name=CK939837; organism=Citrus sinensis; type=EST; length=841bp
GGGGTTTCTCGACGATATTTGTGTTGAAGAACAACGAAGCAAGGGGTTGA
TAGAGGAGCGAGGCGGGGGCGGCTTGACGACCTAGATCTGCTTCACCGTT
TCGCTTTCTCGACGCTATCGCTCTCCGATCCTGTTCTCTGCCGCGCAAGT
TTCGCAGGTCTTAAGGTTCGTTGTAGTTTCAATTTTAATAATCCCCTGAA
GAGTCATGGCTTCAAAGCGTATTTTGAAGGAACTCAAGGATTTGCAGAAG
GATCCTCCCACGTCTTGCAGCGCTGGCCCTGTGGCTGAAGACATGTTCCA
CTGGCAAGCAACAATTATGGGCCCTTCTGATAGCCCATATGCAGGAGGTG
TATTTTTAGTTACCATTCATTTTCCTCCTGATTATCCTTTCAAGCCCCCA
AAGGTTGCTTTTAGGACCAAGGTCTTCCACCCGAACATCAACAGCAATGG
AAGCATCTGTCTTGATATCCTTAAAGAACAGTGGAGTCCAGCGCTTACCA
TTTCAAAGGTCCTGCTCTCTATCTGCTCCTTGCTTACTGATCCAAATCCT
GACGACCCTCTTGTACCGGAGATTGCCCACATGTACAAGTCCGACAAGGC
CAAATATGAATCCACGGCCAGGAGCTGGACACGGAAGTATGCCATGGGAT
GAAGGTTGTTAGGATATTGCAGAAAAAGGAACACATTTATTGAAATATGT
TGTGTGTGTTGTCTATCTATTTTCTTTAACTTGCTTTGGGGAGGGCAGAC
GTTGGTGTTTTAGAATGGTGTTGGGAGTTACAAGGGCGGGACGTTTTTAT
GTTAATGTTGAATGTTTGTGTTTGAAGCTCCTTTGATGGAA
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