FC921822

Overview
NameFC921822
Unique NameFC921822
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921822 vs. ExPASy Swiss-Prot
Match: ACPM_ARATH (Acyl carrier protein, mitochondrial OS=Arabidopsis thaliana GN=At2g44620 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.350e-22
Identity = 59/101 (58.42%), Postives = 68/101 (67.33%), Query Frame = 3
Query:  261 RYLRVNVTTVQRNPSPFSLSFNSIRRCFAEEVRGSFLDKSEVTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKI 563
            R+LRV V T+  N S   + F    R F+       L +  V DRV+ VVK+F KVDPSKVT   HFQNDLGLDSLDTVE+VMA+EEEF  EIPD EADKI
Sbjct:    9 RHLRVPVQTLGLNQS--KIGFLGTIRSFSSH--DDHLSREAVVDRVLDVVKSFPKVDPSKVTPEVHFQNDLGLDSLDTVEIVMAIEEEFKLEIPDKEADKI 105          
BLAST of FC921822 vs. ExPASy Swiss-Prot
Match: B3GTH_ARATH (Probable beta-1,3-galactosyltransferase 17 OS=Arabidopsis thaliana GN=B3GALT17 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.109e-17
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = -2
Query:   90 VHSLKFCQFGCIEGYYTAHYQSPRQMICLWNKLQMLGNAQCCNIR 224
            VHSLKFCQFGCIE Y+TAHYQSPRQMIC+W+KLQ LG  QCCN+R
Sbjct:  629 VHSLKFCQFGCIEDYFTAHYQSPRQMICMWDKLQRLGKPQCCNMR 673          
BLAST of FC921822 vs. ExPASy Swiss-Prot
Match: ACPM_DROME (Acyl carrier protein, mitochondrial OS=Drosophila melanogaster GN=mtacp1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.601e-16
Identity = 38/64 (59.38%), Postives = 54/64 (84.38%), Query Frame = 3
Query:  384 VTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKIVXSA 575
            + +RV+ V+K + K+DPSK+ V +HF NDLGLDSLD VEV+MA+E+EFGFEIPD++A+K++  A
Sbjct:   75 INERVLLVLKLYDKIDPSKLNVESHFINDLGLDSLDHVEVIMAMEDEFGFEIPDSDAEKLLKPA 138          
BLAST of FC921822 vs. ExPASy Swiss-Prot
Match: ACPM_PONPY (Acyl carrier protein, mitochondrial OS=Pongo pygmaeus GN=NDUFAB1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.566e-16
Identity = 36/61 (59.02%), Postives = 52/61 (85.25%), Query Frame = 3
Query:  384 VTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKIV 566
            + DRV+ V+K + K+DP K++VN+HF  DLGLDSLD VE++MA+E+EFGFEIPD +A+K++
Sbjct:   79 IQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLM 139          
BLAST of FC921822 vs. ExPASy Swiss-Prot
Match: ACPM_PANTR (Acyl carrier protein, mitochondrial OS=Pan troglodytes GN=NDUFAB1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.566e-16
Identity = 36/61 (59.02%), Postives = 52/61 (85.25%), Query Frame = 3
Query:  384 VTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKIV 566
            + DRV+ V+K + K+DP K++VN+HF  DLGLDSLD VE++MA+E+EFGFEIPD +A+K++
Sbjct:   79 IQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLM 139          
BLAST of FC921822 vs. ExPASy Swiss-Prot
Match: ACPM_NEUCR (Acyl carrier protein, mitochondrial OS=Neurospora crassa GN=nuo-12 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.566e-16
Identity = 43/69 (62.32%), Postives = 49/69 (71.01%), Query Frame = 3
Query:  360 GSFLDKSEVTDRVISVVKNFQKV-DPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKI 563
            G  L K EV  R+  V+  F KV DP  +T  AHF NDLGLDSLDTVEVVMA+EEEF  EIPD +AD+I
Sbjct:   49 GGHLKKDEVFSRIAQVLSGFDKVNDPKNITETAHFANDLGLDSLDTVEVVMAIEEEFSIEIPDKDADQI 117          
BLAST of FC921822 vs. ExPASy Swiss-Prot
Match: ACPM_MOUSE (Acyl carrier protein, mitochondrial OS=Mus musculus GN=Ndufab1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.566e-16
Identity = 36/61 (59.02%), Postives = 52/61 (85.25%), Query Frame = 3
Query:  384 VTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKIV 566
            + DRV+ V+K + K+DP K++VN+HF  DLGLDSLD VE++MA+E+EFGFEIPD +A+K++
Sbjct:   79 IKDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLM 139          
BLAST of FC921822 vs. ExPASy Swiss-Prot
Match: ACPM_HUMAN (Acyl carrier protein, mitochondrial OS=Homo sapiens GN=NDUFAB1 PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 3.566e-16
Identity = 36/61 (59.02%), Postives = 52/61 (85.25%), Query Frame = 3
Query:  384 VTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKIV 566
            + DRV+ V+K + K+DP K++VN+HF  DLGLDSLD VE++MA+E+EFGFEIPD +A+K++
Sbjct:   79 IQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLM 139          
BLAST of FC921822 vs. ExPASy Swiss-Prot
Match: ACPM_GORGO (Acyl carrier protein, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFAB1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.566e-16
Identity = 36/61 (59.02%), Postives = 52/61 (85.25%), Query Frame = 3
Query:  384 VTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKIV 566
            + DRV+ V+K + K+DP K++VN+HF  DLGLDSLD VE++MA+E+EFGFEIPD +A+K++
Sbjct:   79 IQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLM 139          
BLAST of FC921822 vs. ExPASy Swiss-Prot
Match: ACPM_BOVIN (Acyl carrier protein, mitochondrial OS=Bos taurus GN=NDUFAB1 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.566e-16
Identity = 36/61 (59.02%), Postives = 52/61 (85.25%), Query Frame = 3
Query:  384 VTDRVISVVKNFQKVDPSKVTVNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKIV 566
            + DRV+ V+K + K+DP K++VN+HF  DLGLDSLD VE++MA+E+EFGFEIPD +A+K++
Sbjct:   79 IKDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLM 139          
The following BLAST results are available for this feature:
BLAST of FC921822 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
ACPM_ARATH4.350e-2258.42Acyl carrier protein, mitochondrial OS=Arabidopsis... [more]
B3GTH_ARATH1.109e-1782.22Probable beta-1,3-galactosyltransferase 17 OS=Arab... [more]
ACPM_DROME1.601e-1659.38Acyl carrier protein, mitochondrial OS=Drosophila ... [more]
ACPM_PONPY3.566e-1659.02Acyl carrier protein, mitochondrial OS=Pongo pygma... [more]
ACPM_PANTR3.566e-1659.02Acyl carrier protein, mitochondrial OS=Pan troglod... [more]
ACPM_NEUCR3.566e-1662.32Acyl carrier protein, mitochondrial OS=Neurospora ... [more]
ACPM_MOUSE3.566e-1659.02Acyl carrier protein, mitochondrial OS=Mus musculu... [more]
ACPM_HUMAN3.566e-1659.02Acyl carrier protein, mitochondrial OS=Homo sapien... [more]
ACPM_GORGO3.566e-1659.02Acyl carrier protein, mitochondrial OS=Gorilla gor... [more]
ACPM_BOVIN3.566e-1659.02Acyl carrier protein, mitochondrial OS=Bos taurus ... [more]

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Properties
Property NameValue
Genbank descriptionC06052G08T7 RindPdigS Citrus sinensis cDNA clone C06052G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921822 ID=FC921822; Name=FC921822; organism=Citrus sinensis; type=EST; length=780bp
CAATAAATGAATGATGGCTTTGACTGCAAAATTTGTTCCTCTGGTTCTTC
ATCCTTGAGCTGCTCACTGAACATCACAACCATTCATCATCTAATGTTGC
AGCACTGAGCATTTCCCAGCATTTGCAATTTGTTCCACAGGCAGATCATT
TGCCTTGGAGACTGATAATGAGCCGTATAATAACCTTCTATGCAACCAAA
CTGGCAAAACTTCAAGCTGTGTACCTCGGCCGCGACCACGCTTCGAGCGG
CCGCCCGGGCAGGTACCTGAGAGTGAACGTGACCACCGTGCAACGAAACC
CTAGCCCCTTTTCTCTCTCATTCAACTCCATACGCCGCTGTTTCGCGGAA
GAGGTCAGGGGCTCTTTCCTCGACAAATCTGAAGTCACCGATCGCGTCAT
TTCCGTCGTTAAAAACTTCCAGAAAGTTGATCCTTCCAAGGTTACGGTTA
ATGCCCATTTCCAGAATGATCTTGGGTTGGATAGTTTGGACACTGTGGAG
GTCGTGATGGCACTTGAAGAAGAATTCGGATTCGAGATCCCAGATAATGA
GGCAGACAAGATCGTAANCTCGGCCCGCGACCACGCTAGCGTGGTCGCGG
CCGAGGTACGCGGGGGCGGTCCCTACCGATCCTCAAACAAATACTTTCAA
AGTCTTCCGACCAATGCTCCCCGTTCCTCACCCCGACCCGATCCGTAACC
TACATGCCGCGACCCGGAGATGGCGCTCCACGCGCAGTGACTCTGCTTCC
AGGCGACGGAATTGGACCGTTAGTGACCGG
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