CK939827

Overview
NameCK939827
Unique NameCK939827
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9675 contig Csv1_Contig9675:6..640. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939827 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 7.914e-47
Identity = 104/166 (62.65%), Postives = 122/166 (73.49%), Query Frame = 2
Query:  161 RSGANQLSSVK--YLPSLRRNVNLSVRCTAXXXXXXXXXXXX-PTIPKAE---PQPP--KKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSNGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALA 634
            RS  NQ +++   Y+P+LRRNV+L VR  A             PT P A    PQP   + P+MST FS++ AFSGPAPERINGRLAMIGFVAA+GVEI+KGQ +  QLS GGVAWFLGTSVLL++ASL+P F+GVSVESKS   M+SDAE WNGR AMLGLVALA
Sbjct:   20 RSRVNQFTNIPSVYIPTLRRNVSLKVRSMAEGEPKEQSKVAVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALA 185          
BLAST of CK939827 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.494e-33
Identity = 84/187 (44.92%), Postives = 116/187 (62.03%), Query Frame = 2
Query:   92 MAASLATQSMLASPVAARVTGIRRSGANQLSSVKY---LPSLRRNVNLSVRCTAXXXXXXXXXXXXP--TIPKAEPQPPKKPRMSTGFS-EVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSNGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALA 634
            MA+S    ++ A     + T I R G N L   K    LP +RRN   +VR                  T        P +  ++T  + ++F+F G APERINGR AMIGFVAA+GVE++ G+DVF+Q+ NGGV WFL TS +L +A+L+P+++G+S E+K++GF  SDAE+WNGRFAM+GLVALA
Sbjct:    1 MASSTCYATIPAMSCRGQST-ITRFGPNNLFLGKQSYELPLMRRNAKFTVRSMREDNEKEEQQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALA 186          
BLAST of CK939827 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.771e-30
Identity = 83/178 (46.63%), Postives = 107/178 (60.11%), Query Frame = 2
Query:  104 LATQSMLASPVAARVTGIRRSGANQLSSVKYLPSLRRNVNLSVRCTAXXXXXXXXXXXXPTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSNG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALA 634
            +AT   ++S   A V  + RS A+   + + LP+L R   L VR               P+ P     PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL +G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNGRFAMLGLVALA
Sbjct:    1 MATMMSMSSFAGAAV--VPRSSASSFGA-RSLPALGRRA-LVVRAQTEG----------PSAP-----PPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALA 159          
BLAST of CK939827 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.313e-30
Identity = 65/110 (59.09%), Postives = 81/110 (73.64%), Query Frame = 2
Query:  308 PPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSNG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALA 634
            PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL +G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNGRFAM+GLVALA
Sbjct:   45 PPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALA 154          
BLAST of CK939827 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.946e-30
Identity = 70/120 (58.33%), Postives = 88/120 (73.33%), Query Frame = 2
Query:  281 PTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLS--NGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALA 634
            PT   A P+P  K + +    +  AFSGPAPERINGRLAM+GFVAAL VE ++G  +  Q+   + G+AWFL T+ + +VASL+PL +G SVESKS G  ++DAELWNGRFAMLGLVALA
Sbjct:  100 PTTIPAAPKPVTK-KANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALA 218          
BLAST of CK939827 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.003e-17
Identity = 58/120 (48.33%), Postives = 69/120 (57.50%), Query Frame = 2
Query:  284 TIPKAEPQPPKKPRMSTG--FSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSNGGVAWFLGTSVLLTVASLVPLFKGVSVESKSD--GFMTSDAELWNGRFAMLGLVAL 631
            T P + P PP  P        +EV  FSG APE INGRLAM+GFVAALG E+S G+ V  QL +      L T VL + ASL+P F       K D  G  T DAE+ NGRFAM+G  A+
Sbjct:   47 TPPPSSPSPPPPPPTPAAPTVTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEMTNGRFAMIGFAAM 160          
The following BLAST results are available for this feature:
BLAST of CK939827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA7.914e-4762.65Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL8.494e-3344.92Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI9_HORVU1.771e-3046.63Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU2.313e-3059.09Low molecular mass early light-inducible protein H... [more]
ELI5_HORVU3.946e-3058.33High molecular mass early light-inducible protein ... [more]
CBR_DUNBA5.003e-1748.33Carotene biosynthesis-related protein CBR, chlorop... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004745_B07 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IF_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939827 ID=CK939827; Name=CK939827; organism=Citrus sinensis; type=EST; length=635bp
GGGGAAGAAATTGCAAACAAGGAACCCGCCGACCTGAAGCACCCAATTCC
CGAATTATACTTTGTTCTGGTTTCTACTTCATAAATTAAAAATGGCCGCA
TCACTTGCTACTCAATCTATGCTGGCAAGTCCTGTAGCAGCTCGTGTGAC
TGGTATCAGGAGATCCGGGGCAAACCAACTTTCCTCCGTCAAGTACTTGC
CTAGTCTGCGTAGAAATGTCAACTTATCCGTGCGCTGCACGGCAGAGGAT
GAGCAGCAGCACCAGCAGAAAGATGATCAACCAACCATACCGAAAGCTGA
GCCTCAGCCACCAAAGAAGCCGCGGATGAGCACGGGGTTCTCTGAGGTGT
TCGCGTTCAGCGGGCCGGCACCGGAGAGGATAAACGGGAGGCTTGCGATG
ATTGGGTTCGTGGCTGCATTGGGGGTGGAGATATCCAAGGGTCAGGATGT
GTTTGCCCAGTTATCAAACGGTGGGGTTGCCTGGTTCTTGGGGACCAGTG
TTTTGCTCACGGTTGCGTCCCTGGTTCCTTTGTTTAAAGGTGTCAGCGTG
GAGTCTAAATCGGATGGGTTCATGACTTCGGATGCTGAGTTGTGGAATGG
GAGGTTTGCTATGCTGGGCCTTGTTGCTTTGGCTT
back to top