CK939820

Overview
NameCK939820
Unique NameCK939820
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939820 vs. ExPASy Swiss-Prot
Match: NDUAD_PANTR (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Pan troglodytes GN=NDUFA13 PE=2 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 2.076e-16
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 3
Query:  159 YGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGEL 398
            YG + + K N+ RR L+ E + AR A+LP+LQAE D R ++  ++ LE EA +MKDVP WKVGE+V+++ RW+PP  GEL
Sbjct:   45 YGHWSIMKWNRERRRLQIEDFEARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVPPLIGEL 124          
BLAST of CK939820 vs. ExPASy Swiss-Prot
Match: NDUAD_HUMAN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Homo sapiens GN=NDUFA13 PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 2.076e-16
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 3
Query:  159 YGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGEL 398
            YG + + K N+ RR L+ E + AR A+LP+LQAE D R ++  ++ LE EA +MKDVP WKVGE+V+++ RW+PP  GEL
Sbjct:   45 YGHWSIMKWNRERRRLQIEDFEARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVPPLIGEL 124          
BLAST of CK939820 vs. ExPASy Swiss-Prot
Match: NDUAD_GORGO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Gorilla gorilla gorilla GN=NDUFA13 PE=2 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 2.076e-16
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 3
Query:  159 YGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGEL 398
            YG + + K N+ RR L+ E + AR A+LP+LQAE D R ++  ++ LE EA +MKDVP WKVGE+V+++ RW+PP  GEL
Sbjct:   45 YGHWSIMKWNRERRRLQIEDFEARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVPPLIGEL 124          
BLAST of CK939820 vs. ExPASy Swiss-Prot
Match: NDUAD_BOVIN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Bos taurus GN=NDUFA13 PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 2.712e-16
Identity = 40/80 (50.00%), Postives = 59/80 (73.75%), Query Frame = 3
Query:  159 YGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGEL 398
            +G + + K N+ RR L+ E + AR A++P+LQAE+D R ++  ++ LE EA VMKDVPGWKVGE+V+++ RW+ P  GEL
Sbjct:   45 FGYWSMMKWNRERRRLQIEDFEARIALMPLLQAEKDRRVLQMLRENLEEEATVMKDVPGWKVGESVFHTTRWVTPMMGEL 124          
BLAST of CK939820 vs. ExPASy Swiss-Prot
Match: NDUAD_MACFA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Macaca fascicularis GN=NDUFA13 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.030e-15
Identity = 39/80 (48.75%), Postives = 57/80 (71.25%), Query Frame = 3
Query:  159 YGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGEL 398
            YG + + K N+ RR L+ E + AR A++P+ QAE D R ++  ++ LE EA +MKDVP WKVGE+V+++ RW+PP  GEL
Sbjct:   64 YGHWSIMKWNRERRRLQIEDFEARIALMPLFQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVPPLIGEL 143          
BLAST of CK939820 vs. ExPASy Swiss-Prot
Match: NDUAD_PONPY (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Pongo pygmaeus GN=NDUFA13 PE=2 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 2.998e-15
Identity = 40/80 (50.00%), Postives = 57/80 (71.25%), Query Frame = 3
Query:  159 YGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGEL 398
            YG + + K N+ RR L+ E + AR A+LP+LQAE D R ++  ++ LE EA +MKDVP WKVGE+V+++ RW+ P  GEL
Sbjct:   45 YGHWSMMKWNRERRRLQIEDFEARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVAPLIGEL 124          
BLAST of CK939820 vs. ExPASy Swiss-Prot
Match: NDUAD_MOUSE (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Mus musculus GN=Ndufa13 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 5.654e-14
Identity = 36/80 (45.00%), Postives = 57/80 (71.25%), Query Frame = 3
Query:  159 YGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGEL 398
            +G +++ + N+ RR L  E   AR A++P+ QAE+D R ++  ++ LE EA +MKDVP WKVGE+V+++ RW+PP  GE+
Sbjct:   45 FGYWRMMRWNQERRRLLIEDLEARIALMPLFQAEKDRRTLQILRENLEEEAIIMKDVPNWKVGESVFHTTRWVPPLIGEM 124          
The following BLAST results are available for this feature:
BLAST of CK939820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
NDUAD_PANTR2.076e-1651.25NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAD_HUMAN2.076e-1651.25NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAD_GORGO2.076e-1651.25NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAD_BOVIN2.712e-1650.00NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAD_MACFA1.030e-1548.75NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAD_PONPY2.998e-1550.00NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAD_MOUSE5.654e-1445.00NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004745_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939820 ID=CK939820; Name=CK939820; organism=Citrus sinensis; type=EST; length=776bp
GGGATCTACATCTTCAAAAAATAACTCCAGAAACCTAACAAAAAGGGGCA
AAAGAAGAAGAAAGGAATTGGAAGCATCTGAAAATCAGTGAAGATGACGG
AGGCAATGATTAGAAAGAAGCCATGGCCCTCTTTCTTGCAGCCTTTGGTG
CTTTCTCTTATGGCATGTATCAGGTTGGCAAAGGCAACAAGATCCGCAGG
GCTCTTAAAGAAGAAAAGTATGCCGCACGCAGGGCAATATTGCCTATGCT
CCAAGCTGAAGAAGATGAAAGATTTGTCAAAGAGTGGAAGAAGTATCTCG
AGTATGAAGCTGAAGTAATGAAGGATGTGCCTGGCTGGAAAGTCGGTGAA
AATGTCTACAACTCTGGGAGATGGATGCCTCCAGCATCTGGTGAACTTCG
TCCTGAAGTCTGGTGATGGCATGCGCTTTCAACTGTTGGCCTGATATCGA
TGTTCGTGAAAATTTCTGGTATTTCTTGGTGTACTTTCCTTTTATGAAAT
AAAATTGTATTGGAAAACTACTTTACATGTATTCAAAATGCAGTAGTTTT
TTGTTTTGCACCCTTGGCATGATTGTCTCTCTCCGCTTTCTCATTCAACT
TAAAATTTGTGACTTGGAAGGAAGAGAAATGATATGGCTAGATAGAGAAC
GGATGCCAAGGTCAGCTTTGGAAAATAGTAAAGATTCATTCATAGATTGA
TGTTTCAGTTGATTAGTTCTGTTCTTGCCCTTGAGCGCATAATTGCTCAA
TCTTAAAGAAGCATNCCTACTTTGAT
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