CK939818

Overview
NameCK939818
Unique NameCK939818
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2222 contig Csv1_Contig2222:1..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK939818 vs. ExPASy Swiss-Prot
Match: CP12_CHLRE (Calvin cycle protein CP12 OS=Chlamydomonas reinhardtii GN=cp12 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.251e-15
Identity = 39/74 (52.70%), Postives = 52/74 (70.27%), Query Frame = -1 
Query:  103 ISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERKKD----SDPLEAYCKDNPETDECRTYED 312
            +++KV+ ++K AE+AC     S +CA AWD VEELSAA SH ++  K     +DPLEA+CKD P+ DECR YED
Sbjct:    8 LNKKVQDAVKEAEDAC-AKGTSADCAVAWDTVEELSAAVSHKKDAVKADVTLTDPLEAFCKDAPDADECRVYED 80
The following BLAST results are available for this feature:
BLAST of CK939818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CP12_CHLRE2.251e-1552.70Calvin cycle protein CP12 OS=Chlamydomonas reinhar... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004745_C11 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IF_C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939818 ID=CK939818; Name=CK939818; organism=Citrus sinensis; type=EST; length=654bp
GGGGGCACCAAAACATCACGATCCCATCACATAACAACATCCAAGGACTT
AAAAAGGAGAAAAAAAAAACATAATTAAAAGAGCATAACGACGATGTTAT
CAATCTTCATAAGTGCGGCACTCATCGGTCTCTGGGTTGTCCTTACAGTA
AGCCTCCAAAGGATCGGAATCCTTCTTCCTCTCTCTAGCATGGCTGGCCG
CGGCACTCAGCTCCTCCACCTCGTCCCATGCAGCAGCACACTCGCCACTA
GCAGGGTCCCCCTCGCACGCCTCCTCTGCACTCTTGATGCTTTGCTCCAC
CTTCTCTGAGATTCTATCGGGAGCAGCTCTCAGGGGTTGCATGTGCATGC
GCCCTGTTCTAAACTGAGCGGGCCTTTTCCTTGATGGGTTGTTGAGCCAC
AGAGACCTGCTGGGTTGAACCTTTGACTTCGGGTCTGTGATTTTGGCAAA
GACGCTGGGAGTTGAGAGATTGACACCGGCTATTGTTGCCATTCTCGCCT
CTTGCTCTTCTTCTATTTTGTTGTTTTGGCTTTGGTAATACGGTCTATTC
GGAAATGATACCGTGATGACAGCAGATTTATACAATTGAAGCCCATAACG
CTTCGTGAACACATATTTCTTAACAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA
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