CK939817

Overview
NameCK939817
Unique NameCK939817
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length391
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2614 contig Csv1_Contig2614:116..505. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939817 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.583e-21
Identity = 44/66 (66.67%), Postives = 52/66 (78.79%), Query Frame = 3
Query:   93 MSDTCGNCDCADRSQGVKKGSSYAADFGETDLSFVSTVVVMDVQAAETESNCKCGPTCACVNCTCG 290
            MSDTCGNCDCAD++Q VKKGSSY AD  ET+ S ++  VVMD  AAE +  CKCGP+C+C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of CK939817 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.657e-16
Identity = 36/64 (56.25%), Postives = 45/64 (70.31%), Query Frame = 3
Query:  102 TCGNCDCADRSQGVKKGSSYAADFGETDLSFVSTVVVMDVQAAETESNCKCGPTCACVNCTCGS 293
            TCGNCDC D+SQ VKKG+SY  D  ET+ S+V  V+V   +AAE +  CKCG  CAC +C CG+
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of CK939817 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.470e-16
Identity = 41/65 (63.08%), Postives = 46/65 (70.77%), Query Frame = 3
Query:   93 MSDTCGNCDCADRSQGVKKGSSYAADFGETDLSFVSTVVVMDVQAAETESNCKCGPTCACVNCTC 287
            MSD CGNCDCAD SQ VKKG+S   D  ETD S++  VV M V AAE+   CKCG +C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNSI--DIVETDKSYIEDVV-MGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of CK939817 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.540e-14
Identity = 35/65 (53.85%), Postives = 42/65 (64.62%), Query Frame = 3
Query:   93 MSDTCGNCDCADRSQGVKKGSSYAADFGETDLSFVSTVVVMDVQAAETESNCKCGPTCACVNCTC 287
            MS  C NCDC+D SQ  KKG S+     ET+   + TV+ MD  AAE   NCKCGP+CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of CK939817 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.450e-14
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 3
Query:   93 MSDTCGNCDCADRSQGVKKGSSYAADFGETDLSFVSTVVVMDVQAAETESNCKCGPTCACVNCTCG 290
            MS  C NCDCAD +Q VKKG+SY     ET+   + TV V D  AAE +  CKCG  C+CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of CK939817 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.591e-13
Identity = 33/66 (50.00%), Postives = 40/66 (60.61%), Query Frame = 3
Query:   93 MSDTCGNCDCADRSQGVKKGSSYAADFGETDLSFVSTVVVMDVQAAETESNCKCGPTCACVNCTCG 290
            MSD CGNCDCAD+SQ VKKG+SY     E + S        +V A E    CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CK939817 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.591e-13
Identity = 33/66 (50.00%), Postives = 40/66 (60.61%), Query Frame = 3
Query:   93 MSDTCGNCDCADRSQGVKKGSSYAADFGETDLSFVSTVVVMDVQAAETESNCKCGPTCACVNCTCG 290
            MSD CGNCDCAD+SQ VKKG+SY     E + S        +V A E    CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CK939817 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.361e-11
Identity = 30/66 (45.45%), Postives = 38/66 (57.58%), Query Frame = 3
Query:   93 MSDTCGNCDCADRSQGVKKGSSYAADFGETDLSFVSTVVVMDVQAAETESNCKCGPTCACVNCTCG 290
            MSD CGNCDCAD+SQ VKKG+SY     + + S     +  +V   E +  CKC   C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of CK939817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
MT3_CARPA3.583e-2166.67Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC2.657e-1656.25Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE3.470e-1663.08Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_PRUAV5.540e-1453.85Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO9.450e-1454.55Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ3.591e-1350.00Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI3.591e-1350.00Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ3.361e-1145.45Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004745_C10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IF_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939817 ID=CK939817; Name=CK939817; organism=Citrus sinensis; type=EST; length=391bp
GGGGATATCATCACAGCACCGTAAAGCAAGNNNNNTACAATAAAGAGCCC
TCTATTTCCAGTTTTAAATTCCAAGTTCTAAGCTCAATCAACATGTCGGA
CACCTGCGGCAACTGCGACTGCGCTGACAGGAGCCAGGGTGTGAAGAAGG
GAAGCAGCTATGCTGCTGACTTCGGCGAGACTGACTTGAGCTTTGTCAGC
ACCGTTGTTGTCATGGACGTTCAGGCTGCTGAGACTGAAAGTAACTGCAA
GTGCGGCCCCACCTGCGCTTGTGTGAACTGCACTTGTGGTAGTCACTAAT
AAGCAAACACATGCAGCAAAAAATAAGAAGCTGCAAGTGTGCCTAAATAT
TGTGGGGGTTAAGAATAATGTAAGGGTGATTAAAAAAAAAA
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