CK939802

Overview
NameCK939802
Unique NameCK939802
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length518
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1671 contig Csv1_Contig1671:155..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939802 vs. ExPASy Swiss-Prot
Match: PAS2A_ORYSJ (Protein tyrosine phosphatase-like protein PASTICCINO 2A OS=Oryza sativa subsp. japonica GN=PAS2A PE=2 SV=2)

HSP 1 Score: 257.684 bits (657), Expect = 2.352e-68
Identity = 125/170 (73.53%), Postives = 140/170 (82.35%), Query Frame = 2
Query:    8 SLLRRLYLTAYNWTVFAGWAQVLYLALKTLNESGHENVYKAVERPLQLAQTAAVLEILHGLLGLVRSPITATLPQISSRLYVTWGILWSFPQTQNHXXXXXXXXXXXXTEIIRYSFFGMKEALGFAPSRLLWLRYSTFLLLYPSGITSEVGLIYTALPYIXXSEKYCLRM 517
            S +RRLYL+ YNW VF GWAQVLY A+ TL ESGHE VY AVERPLQ AQTAA LEILHGL+GLVRSP++ATLPQI SRL++TWGILWSFP+T +H            TEIIRYSFFGMKEA GFAPS LLWLRYSTF++LYP+GI+SEVGLIY ALPY+  SEKYCLRM
Sbjct:    6 SAVRRLYLSVYNWAVFFGWAQVLYYAVTTLLESGHEAVYAAVERPLQFAQTAAFLEILHGLVGLVRSPVSATLPQIGSRLFLTWGILWSFPETHSHILVTSLVISWSITEIIRYSFFGMKEAFGFAPSWLLWLRYSTFMVLYPTGISSEVGLIYIALPYMKASEKYCLRM 175          
BLAST of CK939802 vs. ExPASy Swiss-Prot
Match: PAS2B_ORYSJ (Protein tyrosine phosphatase-like protein PASTICCINO 2B OS=Oryza sativa subsp. japonica GN=PAS2B PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 1.525e-67
Identity = 123/170 (72.35%), Postives = 139/170 (81.76%), Query Frame = 2
Query:    8 SLLRRLYLTAYNWTVFAGWAQVLYLALKTLNESGHENVYKAVERPLQLAQTAAVLEILHGLLGLVRSPITATLPQISSRLYVTWGILWSFPQTQNHXXXXXXXXXXXXTEIIRYSFFGMKEALGFAPSRLLWLRYSTFLLLYPSGITSEVGLIYTALPYIXXSEKYCLRM 517
            S +RRLYL+ YNW VF GWAQVLY A+ TL ESGHE VY AVERPLQ AQTAA LEILHGL+GLVRSP++ATLPQI SRL++TWGILWSFP+T +H            TEIIRYSFFGMKE  GFAPS LLWLRYSTF++LYP+GI+SEVGLIY ALPY+  +EKYCLRM
Sbjct:    6 SAVRRLYLSVYNWAVFFGWAQVLYYAVTTLLESGHEAVYAAVERPLQFAQTAAFLEILHGLVGLVRSPVSATLPQIGSRLFLTWGILWSFPETHSHILVTSLVISWSITEIIRYSFFGMKETFGFAPSWLLWLRYSTFMVLYPTGISSEVGLIYIALPYMKATEKYCLRM 175          
BLAST of CK939802 vs. ExPASy Swiss-Prot
Match: PAS2_ARATH (Protein tyrosine phosphatase-like protein PASTICCINO 2 OS=Arabidopsis thaliana GN=PAS2 PE=1 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 7.567e-67
Identity = 123/171 (71.93%), Postives = 144/171 (84.21%), Query Frame = 2
Query:    5 LSLLRRLYLTAYNWTVFAGWAQVLYLALKTLNESGHENVYKAVERPLQLAQTAAVLEILHGLLGLVRSPITATLPQISSRLYVTWGILWSFPQTQNHXXXXXXXXXXXXTEIIRYSFFGMKEALGFAPSRLLWLRYSTFLLLYPSGITSEVGLIYTALPYIXXSEKYCLRM 517
            LS++RR+YLT YNW VFAGWAQVLYLA+ TL E+G+ENVY A+E+PLQLAQTAAVLEILHGL+GLVRSP++ATLPQI SRL++TWGIL+SFP+ ++H            TEIIRYSFFG KEALGFAPS  LWLRYS+FLLLYP+GITSEVGLIY ALP+I  SE Y +RM
Sbjct:    5 LSVVRRVYLTLYNWIVFAGWAQVLYLAITTLKETGYENVYDAIEKPLQLAQTAAVLEILHGLVGLVRSPVSATLPQIGSRLFLTWGILYSFPEVRSHFLVTSLVISWSITEIIRYSFFGFKEALGFAPSWHLWLRYSSFLLLYPTGITSEVGLIYLALPHIKTSEMYSVRM 175          
BLAST of CK939802 vs. ExPASy Swiss-Prot
Match: PTPLA_MOUSE (Protein-tyrosine phosphatase-like member A OS=Mus musculus GN=Ptpla PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.486e-25
Identity = 61/172 (35.47%), Postives = 94/172 (54.65%), Query Frame = 2
Query:    5 LSLLRRLYLTAYNWTVFAGWAQVLYLALKTLNESG-HENVYKAVERPLQLAQTAAVLEILHGLLGLVRSPITATLPQISSRLYVTWGILWSFPQTQNHXXXXXXXXXXXXTEIIRYSFFGMKEALGFAPSRLLWLRYSTFLLLYPSGITSEVGLIYTALPYIXXSEKYCLRM 517
            L LL   +LT YN  + AGW  +    ++   E G H  +YK++++ L+  QT A+LE++H L+G+V + +  T  Q+SSR+++ W I  S    QN             TEI RYSF+     L   P  + W RY+ F++LYP G+  E+  IY ALPY+  S  + +R+
Sbjct:   61 LGLLATAWLTFYNIAMTAGWLVLAIAMVRFYMEKGTHRGLYKSIQKTLKFFQTFALLEVVHCLIGIVPTSVLVTGVQVSSRIFMVWLITHSIKPIQNEESVVLFLVSWTVTEITRYSFYTF-SLLDHLPHFIKWARYNLFIILYPVGVAGELLTIYAALPYVKKSGMFSVRL 231          
BLAST of CK939802 vs. ExPASy Swiss-Prot
Match: PTPLA_SHEEP (Protein-tyrosine phosphatase-like member A OS=Ovis aries GN=PTPLA PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.085e-24
Identity = 59/172 (34.30%), Postives = 95/172 (55.23%), Query Frame = 2
Query:    5 LSLLRRLYLTAYNWTVFAGWAQVLYLALKTLNESG-HENVYKAVERPLQLAQTAAVLEILHGLLGLVRSPITATLPQISSRLYVTWGILWSFPQTQNHXXXXXXXXXXXXTEIIRYSFFGMKEALGFAPSRLLWLRYSTFLLLYPSGITSEVGLIYTALPYIXXSEKYCLRM 517
            L LL  ++LT YN  + AGW  +    ++   E G H+ +YK++++ L+  QT A+LEI+H L+G+V + +     Q+SSR+++ W +  S    QN             TEI RYSF+     L   P  + W RY+ F++LYP G+  E+  IY ALPY+  +  + +R+
Sbjct:   68 LGLLATIWLTFYNIAMTAGWLVLAIAMVRFYMEKGTHKGLYKSIQKTLKFFQTFALLEIVHCLIGIVPTSVLVAGVQVSSRIFMVWLVTHSIKPIQNEESVVLFLVAWTVTEITRYSFYTF-SLLDHLPYFIKWARYNFFIILYPVGVAGELLTIYAALPYVKKTGMFSIRL 238          
BLAST of CK939802 vs. ExPASy Swiss-Prot
Match: PTPLA_CANFA (Protein-tyrosine phosphatase-like member A OS=Canis familiaris GN=PTPLA PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.085e-24
Identity = 60/172 (34.88%), Postives = 95/172 (55.23%), Query Frame = 2
Query:    5 LSLLRRLYLTAYNWTVFAGWAQVLYLALKTLNESG-HENVYKAVERPLQLAQTAAVLEILHGLLGLVRSPITATLPQISSRLYVTWGILWSFPQTQNHXXXXXXXXXXXXTEIIRYSFFGMKEALGFAPSRLLWLRYSTFLLLYPSGITSEVGLIYTALPYIXXSEKYCLRM 517
            L LL  ++LT YN  + AGW  +    ++   E G H+ +YK++++ L+  QT A+LEI+H L+G+V + +     Q+SSR+++ W I  S    QN             TEI RYSF+     L   P  + W RY+ F++LYP G+  E+  IY ALPY+  +  + +R+
Sbjct:   29 LGLLATVWLTFYNIAMTAGWLVLAIAMVRFYMEKGTHKGLYKSIQKTLKFFQTFALLEIVHCLIGIVPTSVIVAGVQVSSRIFMVWLITHSIKPIQNEESVVLFLVAWTVTEITRYSFYTF-SLLDHLPYFIKWARYNFFIILYPVGVVGELLTIYAALPYVKKTGMFSIRL 199          
BLAST of CK939802 vs. ExPASy Swiss-Prot
Match: PTPLB_MOUSE (Protein-tyrosine phosphatase-like member B OS=Mus musculus GN=Ptplb PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 7.922e-24
Identity = 58/165 (35.15%), Postives = 90/165 (54.55%), Query Frame = 2
Query:   26 YLTAYNWTVFAGWAQVLY-LALKTLNESGHENVYKAVERPLQLAQTAAVLEILHGLLGLVRSPITATLPQISSRLYVTWGILWSFPQTQNHXXXXXXXXXXXXTEIIRYSFFGMKEALGFAPSRLLWLRYSTFLLLYPSGITSEVGLIYTALPYIXXSEKYCLRM 517
            YL  YN  + AGW  +   L    L +  + ++Y ++ERPL+  QT A+LEILH  +G+V S +  T  Q+ SR+++ W +  S  + Q+             TEIIRYSF+     L   P  + W RY+ F++LYP G+T E+  IY ALP++  +  Y + +
Sbjct:   41 YLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIERPLKFFQTGALLEILHCAIGIVPSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTF-SLLNHLPYIIKWARYTLFIVLYPMGVTGELLTIYAALPFVRQAGLYSISL 204          
BLAST of CK939802 vs. ExPASy Swiss-Prot
Match: PTPLB_BOVIN (Protein-tyrosine phosphatase-like member B OS=Bos taurus GN=PTPLB PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 2.305e-23
Identity = 57/169 (33.73%), Postives = 91/169 (53.85%), Query Frame = 2
Query:   14 LRRLYLTAYNWTVFAGWAQVLY-LALKTLNESGHENVYKAVERPLQLAQTAAVLEILHGLLGLVRSPITATLPQISSRLYVTWGILWSFPQTQNHXXXXXXXXXXXXTEIIRYSFFGMKEALGFAPSRLLWLRYSTFLLLYPSGITSEVGLIYTALPYIXXSEKYCLRM 517
            L   YL  YN  + AGW  +   L    L +  + ++Y ++E+PL+  QT A+LEILH  +G+V S +  T  Q+ SR+++ W +  S  + Q+             TEIIRYSF+     L   P  + W RY+ F++LYP G++ E+  IY ALP++  +  Y + +
Sbjct:   37 LTTAYLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAIGIVPSSVVLTSIQVMSRVFLIWAVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTF-SLLNHLPYLIKWARYTLFIVLYPMGVSGELLTIYAALPFVRQAGLYSISL 204          
BLAST of CK939802 vs. ExPASy Swiss-Prot
Match: PTPLB_PONAB (Protein-tyrosine phosphatase-like member B OS=Pongo abelii GN=PTPLB PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.010e-23
Identity = 57/169 (33.73%), Postives = 91/169 (53.85%), Query Frame = 2
Query:   14 LRRLYLTAYNWTVFAGWAQVLY-LALKTLNESGHENVYKAVERPLQLAQTAAVLEILHGLLGLVRSPITATLPQISSRLYVTWGILWSFPQTQNHXXXXXXXXXXXXTEIIRYSFFGMKEALGFAPSRLLWLRYSTFLLLYPSGITSEVGLIYTALPYIXXSEKYCLRM 517
            L   YL  YN  + AGW  +   L    L +  + ++Y ++E+PL+  QT A+LEILH  +G+V S +  T  Q+ SR+++ W +  S  + Q+             TEIIRYSF+     L   P  + W RY+ F++LYP G++ E+  IY ALP++  +  Y + +
Sbjct:   38 LATAYLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAIGIVPSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTF-SLLNHLPYLIKWARYTLFIVLYPMGVSGELLTIYAALPFVRQAGLYSISL 205          
BLAST of CK939802 vs. ExPASy Swiss-Prot
Match: PTPLB_HUMAN (Protein-tyrosine phosphatase-like member B OS=Homo sapiens GN=PTPLB PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.010e-23
Identity = 57/169 (33.73%), Postives = 91/169 (53.85%), Query Frame = 2
Query:   14 LRRLYLTAYNWTVFAGWAQVLY-LALKTLNESGHENVYKAVERPLQLAQTAAVLEILHGLLGLVRSPITATLPQISSRLYVTWGILWSFPQTQNHXXXXXXXXXXXXTEIIRYSFFGMKEALGFAPSRLLWLRYSTFLLLYPSGITSEVGLIYTALPYIXXSEKYCLRM 517
            L   YL  YN  + AGW  +   L    L +  + ++Y ++E+PL+  QT A+LEILH  +G+V S +  T  Q+ SR+++ W +  S  + Q+             TEIIRYSF+     L   P  + W RY+ F++LYP G++ E+  IY ALP++  +  Y + +
Sbjct:   37 LATAYLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAIGIVPSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVIAWTITEIIRYSFYTF-SLLNHLPYLIKWARYTLFIVLYPMGVSGELLTIYAALPFVRQAGLYSISL 204          
The following BLAST results are available for this feature:
BLAST of CK939802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
PAS2A_ORYSJ2.352e-6873.53Protein tyrosine phosphatase-like protein PASTICCI... [more]
PAS2B_ORYSJ1.525e-6772.35Protein tyrosine phosphatase-like protein PASTICCI... [more]
PAS2_ARATH7.567e-6771.93Protein tyrosine phosphatase-like protein PASTICCI... [more]
PTPLA_MOUSE5.486e-2535.47Protein-tyrosine phosphatase-like member A OS=Mus ... [more]
PTPLA_SHEEP2.085e-2434.30Protein-tyrosine phosphatase-like member A OS=Ovis... [more]
PTPLA_CANFA2.085e-2434.88Protein-tyrosine phosphatase-like member A OS=Cani... [more]
PTPLB_MOUSE7.922e-2435.15Protein-tyrosine phosphatase-like member B OS=Mus ... [more]
PTPLB_BOVIN2.305e-2333.73Protein-tyrosine phosphatase-like member B OS=Bos ... [more]
PTPLB_PONAB3.010e-2333.73Protein-tyrosine phosphatase-like member B OS=Pong... [more]
PTPLB_HUMAN3.010e-2333.73Protein-tyrosine phosphatase-like member B OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004745_D06 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IF_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939802 ID=CK939802; Name=CK939802; organism=Citrus sinensis; type=EST; length=518bp
TTGTTTGTCGCTTCTCAGACGCCTGTACCTCACTGCCTACAACTGGACCG
TCTTTGCCGGATGGGCCCAGGTTTTGTACCTTGCTTTGAAGACTTTAAAC
GAGTCCGGCCACGAAAATGTCTACAAAGCCGTCGAAAGGCCTCTCCAGCT
CGCCCAAACCGCCGCCGTTTTGGAGATTCTTCATGGTCTTCTAGGCTTGG
TGAGATCTCCAATAACCGCTACACTGCCACAAATTAGCTCTAGATTGTAT
GTTACATGGGGCATTTTATGGAGTTTTCCTCAGACTCAGAATCATATACT
TGTTAGTTCATTGGTGATCAGCTGGTCCTTAACTGAGATTATTCGCTACT
CTTTCTTTGGCATGAAGGAGGCACTTGGTTTTGCACCTTCAAGGCTCTTG
TGGCTGAGGTATAGCACATTTTTGCTGTTGTATCCATCTGGCATTACGAG
TGAAGTTGGTCTTATTTACACTGCCCTTCCATACATAAANNNATCCGAGA
AGTATTGTCTTAGAATGC
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