CX675737

Overview
NameCX675737
Unique NameCX675737
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length589
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675737 vs. ExPASy Swiss-Prot
Match: NIFU4_ARATH (NifU-like protein 4, mitochondrial OS=Arabidopsis thaliana GN=NIFU4 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.883e-34
Identity = 70/81 (86.42%), Postives = 73/81 (90.12%), Query Frame = 2
Query:    2 LETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAEDEVATLAGQM 244
            LETRIRPAVQDDGGDIEY GFDPE+G VKLRMQGACSGCPSSSVTLKSGIENMLMHYV EVK VEQE D EDE  TL+G+M
Sbjct:  200 LETRIRPAVQDDGGDIEYCGFDPESGIVKLRMQGACSGCPSSSVTLKSGIENMLMHYVSEVKGVEQEFDGEDEEGTLSGEM 280          
BLAST of CX675737 vs. ExPASy Swiss-Prot
Match: NIFU5_ARATH (NifU-like protein 5, mitochondrial OS=Arabidopsis thaliana GN=NIFU5 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.077e-31
Identity = 68/82 (82.93%), Postives = 71/82 (86.59%), Query Frame = 2
Query:    2 LETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAEDEVATLAGQME 247
            LETRIRP+VQDDGGDIEY GFD ETG VKLRMQGACSGCPSSSVTLKSGIENMLMHYV EVK VEQE D E+E  T +G ME
Sbjct:  195 LETRIRPSVQDDGGDIEYCGFDTETGIVKLRMQGACSGCPSSSVTLKSGIENMLMHYVSEVKGVEQEFDGEEE-GTSSGPME 275          
BLAST of CX675737 vs. ExPASy Swiss-Prot
Match: NFU1_YEAST (NifU-like protein, mitochondrial OS=Saccharomyces cerevisiae GN=NFU1 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.084e-23
Identity = 50/75 (66.67%), Postives = 62/75 (82.67%), Query Frame = 2
Query:    2 LETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAEDEVA 226
            ++TRIRPA+ +DGGDI+YRG+DP+TGTV LR+QGAC+ C SS VTLK GIE+ML HYV EVK V Q +D E E+A
Sbjct:  161 IDTRIRPAILEDGGDIDYRGWDPKTGTVYLRLQGACTSCSSSEVTLKYGIESMLKHYVDEVKEVIQIMDPEQEIA 235          
BLAST of CX675737 vs. ExPASy Swiss-Prot
Match: YH9J_SCHPO (NifU-like protein C1709.19c OS=Schizosaccharomyces pombe GN=SPBC1709.19c PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.261e-23
Identity = 47/75 (62.67%), Postives = 64/75 (85.33%), Query Frame = 2
Query:    2 LETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAEDEVA 226
            +ET IRP++Q+DGGD+E+RGFD +TGTV L+++GAC  C SS+VTLK+GI+ ML HY+PEV++V Q LD E+EVA
Sbjct:  165 IETSIRPSIQEDGGDVEFRGFDEKTGTVSLKLRGACRTCSSSAVTLKNGIQQMLKHYIPEVENVVQVLDPEEEVA 239          
BLAST of CX675737 vs. ExPASy Swiss-Prot
Match: NFU1_DROAN (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila ananassae GN=GF20932 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.770e-21
Identity = 48/75 (64.00%), Postives = 61/75 (81.33%), Query Frame = 2
Query:    2 LETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAEDEVA 226
            L+TRIRP VQ+DGGDI + G+  E G VKL+MQG+CS CPSS VTLK+G++NML  Y+PEV+SVEQ  DA D++A
Sbjct:  186 LDTRIRPTVQEDGGDIVFMGY--ENGIVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQVFDAVDKMA 258          
BLAST of CX675737 vs. ExPASy Swiss-Prot
Match: NFU1_DROVI (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila virilis GN=GJ19011 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.433e-20
Identity = 47/75 (62.67%), Postives = 60/75 (80.00%), Query Frame = 2
Query:    2 LETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAEDEVA 226
            L+TRIRP VQ+DGGDI + G+  E G VKL+MQG+CS CPSS VTLK+G++NML  Y+PEV+SVEQ  D  D++A
Sbjct:  194 LDTRIRPTVQEDGGDIVFMGY--ENGIVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQVFDDADKMA 266          
BLAST of CX675737 vs. ExPASy Swiss-Prot
Match: NFU1_DROYA (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila yakuba GN=GE15286 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.192e-20
Identity = 46/74 (62.16%), Postives = 58/74 (78.38%), Query Frame = 2
Query:    2 LETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAEDEV 223
            L+TRIRP VQ+DGGDI + G+  E G VKL+MQG+CS CPSS VTLK+G++NML  Y+PEV+SVEQ  D  D +
Sbjct:  186 LDTRIRPTVQEDGGDIVFMGY--EAGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQVFDEADRM 257          
BLAST of CX675737 vs. ExPASy Swiss-Prot
Match: NFU1_DROWI (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila willistoni GN=GK25604 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.192e-20
Identity = 46/75 (61.33%), Postives = 59/75 (78.67%), Query Frame = 2
Query:    2 LETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAEDEVA 226
            L+TRIRP VQ+DGGDI +  +D   G VKL+MQG+CS CPSS VTLK+G++NML  Y+PEV+SVEQ  D  D++A
Sbjct:  187 LDTRIRPTVQEDGGDIVFMSYD--NGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQVFDEADKMA 259          
BLAST of CX675737 vs. ExPASy Swiss-Prot
Match: NFU1_DROSI (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila simulans GN=GD15490 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.192e-20
Identity = 46/74 (62.16%), Postives = 58/74 (78.38%), Query Frame = 2
Query:    2 LETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAEDEV 223
            L+TRIRP VQ+DGGDI + G+  E G VKL+MQG+CS CPSS VTLK+G++NML  Y+PEV+SVEQ  D  D +
Sbjct:  186 LDTRIRPTVQEDGGDIVFMGY--EAGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQVFDEADRM 257          
BLAST of CX675737 vs. ExPASy Swiss-Prot
Match: NFU1_DROSE (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila sechellia GN=GM13534 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.192e-20
Identity = 46/74 (62.16%), Postives = 58/74 (78.38%), Query Frame = 2
Query:    2 LETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAEDEV 223
            L+TRIRP VQ+DGGDI + G+  E G VKL+MQG+CS CPSS VTLK+G++NML  Y+PEV+SVEQ  D  D +
Sbjct:  186 LDTRIRPTVQEDGGDIVFMGY--EAGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQVFDEADRM 257          
The following BLAST results are available for this feature:
BLAST of CX675737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
NIFU4_ARATH3.883e-3486.42NifU-like protein 4, mitochondrial OS=Arabidopsis ... [more]
NIFU5_ARATH3.077e-3182.93NifU-like protein 5, mitochondrial OS=Arabidopsis ... [more]
NFU1_YEAST3.084e-2366.67NifU-like protein, mitochondrial OS=Saccharomyces ... [more]
YH9J_SCHPO5.261e-2362.67NifU-like protein C1709.19c OS=Schizosaccharomyces... [more]
NFU1_DROAN3.770e-2164.00NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROVI1.433e-2062.67NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROYA3.192e-2062.16NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROWI3.192e-2061.33NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROSI3.192e-2062.16NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROSE3.192e-2062.16NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_64D12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-64D12-G24-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675737 ID=CX675737; Name=CX675737; organism=Citrus sinensis; type=EST; length=589bp
CCTCGAGACCCGTATTCGGCCAGCTGTGCAAGATGACGGTGGGGACATTG
AGTACAGAGGATTTGATCCGGAAACAGGAACAGTCAAATTAAGAATGCAA
GGTGCATGTAGTGGCTGCCCGAGCTCGTCCGTCACATTAAAATCTGGCAT
TGAGAATATGCTTATGCACTATGTTCCTGAGGTCAAAAGTGTGGAGCAAG
AATTAGATGCTGAAGACGAGGTTGCAACATTAGCAGGCCAGATGGAGTAG
TTGTGTCTTTTATTTTTACTTCCTTGCTTACCATGCACAGATGAATCTGT
GGATGAAAAGAGCTGGTGGTATGCCTTTCTGTACAGGAACAAATAATGTT
TGTGCAATAATGAAGTTTATTTATATTACTGTATTTTATTATGTTCCTGT
AAGCTAATTGCAATCAATCACATAGCATAGAGATGTAGTGGTACGGTCAC
TTGCAGGAAAGTTGGCTGGCTTATTTTTATTTGTTTATCTCTTTGTATCA
CACATGGCTATTAAATTTTGGATCTGGAACTTGTCTTTGAATTTTCTCCA
GATCATTGATATGAATAAAGGTTTATTTGATGAAAAAAA
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