CK939764

Overview
NameCK939764
Unique NameCK939764
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK939764 vs. ExPASy Swiss-Prot
Match: PX24D_DICDI (PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.833e-12
Identity = 35/113 (30.97%), Postives = 59/113 (52.21%), Query Frame = 2 
Query:  407 YLAMVKSRPVLTKSATCSLIYIAADLSSQTIASS----ESYDLVRTLRMGGYGMLILGPTLHFWFNFVSKLFPKQDLVATLKKMAMGQTIYGPIMTVVFLSLNASLQGESGEE 733
            YL+ +   PV TK+ T   +Y+ +D   Q I  S    + YD  R++RM  +G  + GP  H+WF ++ K FPK+       K+ + Q +  P+   +F S    L+G+S ++
Sbjct:   15 YLSQLHKYPVATKAVTSGFLYLISDSLVQGIELSRDKDKKYDFKRSMRMAVFGFAVTGPLFHYWFKYLDKHFPKKSYRHAFIKLTIDQVVCSPVFNFLFFSGMGILEGKSKDD 127
[Close]
BLAST of CK939764 vs. ExPASy Swiss-Prot
Match: SYM1_GIBZE (Protein SYM1 OS=Gibberella zeae GN=SYM1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.699e-12
Identity = 38/118 (32.20%), Postives = 69/118 (58.47%), Query Frame = 2 
Query:  395 FVGWYLAMVKSRPVLTKSATCSLIYIAADLSSQTIAS---SESYDLVRTLRMGGYGMLILGPTLHFWFNFVSKLFPKQD--LVATLKKMAMGQTIYGPIMTVVFLSLNASLQGESGEE 733
            F+ WY + + +RP+LT+S T + ++   D+++Q +     ++ +DLVRT RM  YG  + GP    WF F+++    ++      L ++A  Q  + P+M  VFLS  A+++G+S +E
Sbjct:    4 FIRWYNSRLAARPLLTQSVTTAFLFATGDVTAQQLVEKRGAQKHDLVRTGRMALYGGFVFGPVATTWFAFLARRVNVRNNKKAEVLARVACDQLGFAPVMIGVFLSSMATMEGKSVKE 121
The following BLAST results are available for this feature:
BLAST of CK939764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PX24D_DICDI2.833e-1230.97PXMP2/4 family protein 4 OS=Dictyostelium discoide... [more]
SYM1_GIBZE3.699e-1232.20Protein SYM1 OS=Gibberella zeae GN=SYM1 PE=3 SV=1[more]
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Properties
Property NameValue
Genbank descriptionCGF1004746_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939764 ID=CK939764; Name=CK939764; organism=Citrus sinensis; type=EST; length=733bp
GGGGGTCTCCGATTCTGTTTCGTCTAAATATTTTCCCCTAAAACCCCTCA
AAACCCACCGGCAGACGAAAGCCGCCGGAAAGCAGAGAAAGAAAAGAAAG
AGTGAAAATTATAAAATGAGAGGAGTGTTGAAGCGGAACGGCACCGTTTC
ACAGCTTTTGCAGAGCCACGGAGGCGTCAACAACAAGAAAATCACTGACG
TATTCACCGATCCAGTTGCCAGTATCAACTCGAACCTTCTGAAAAACCAG
ACGCAGTCGAGAGAATACTTCAAGTTGGCTGATTTTCTCAGGAAATCAAC
GCGGGCATACAATGAAGTCTCTCCTTATTCCTCTCTGTTTTCCTCTGCAT
ATGCAGCTTCGTCTGCCAGAACGGCGTCGTTTTCGGAGGTGGGTTTTGTT
GGGTGGTATTTGGCAATGGTGAAGTCACGGCCTGTTCTTACCAAGAGTGC
CACCTGCTCTCTTATTTATATTGCTGCTGATTTGTCATCGCAGACTATTG
CATCTTCAGAATCTTATGATCTGGTGAGGACATTACGGATGGGTGGATAT
GGGATGTTAATTTTAGGTCCCACATTGCACTTTTGGTTCAATTTTGTGTC
AAAATTGTTTCCGAAGCAAGATCTGGTTGCTACATTGAAGAAGATGGCAA
TGGGGCAGACAATTTATGGACCAATTATGACTGTTGTGTTCTTATCACTG
AATGCAAGTTTACAAGGTGAAAGTGGAGAAGAG
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