CK939750

Overview
NameCK939750
Unique NameCK939750
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10775 contig Csv1_Contig10775:191..941. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK939750 vs. ExPASy Swiss-Prot
Match: METB_ARATH (Cystathionine gamma-synthase, chloroplastic OS=Arabidopsis thaliana GN=CGS1 PE=2 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 1.009e-44
Identity = 114/222 (51.35%), Postives = 132/222 (59.46%), Query Frame = 2 
Query:  161 DPDFSGS--ARFDKPRISAARVIGASTASFSGVSSLIFRFPPNFVRQLSTKARRNCSNIGVAQIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------VEITSGDDIALV--DGLKN-VQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSAL 751
            DPD  GS      + R+ A+  I +S    +G+SS I RFPPNFVRQLS KARRNCSNIGVAQI                                                  V + S D+  +V  +G++  +    L D K+  SFLSSDGSL +HAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKR  SFEYGRYGNPTTVV+E+K+SAL
Sbjct:   25 DPDLVGSPVGGSSRRRVHASAGISSSFTGDAGLSSRILRFPPNFVRQLSIKARRNCSNIGVAQIVAAKWSNNPSSALPSAAAAAATSSASAVSSAASAAAASSAAAAPVAAAPPVVLKSVDEEVVVAEEGIREKIGSVQLTDSKH--SFLSSDGSLTVHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRSVSFEYGRYGNPTTVVLEDKISAL 244
The following BLAST results are available for this feature:
BLAST of CK939750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
METB_ARATH1.009e-4451.35Cystathionine gamma-synthase, chloroplastic OS=Ara... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004746_B02 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIF_B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939750 ID=CK939750; Name=CK939750; organism=Citrus sinensis; type=EST; length=751bp
GGGGGATCTCCAAATTCATTTCTTGACTTGTGTTCTTATCATAGAAGACC
GAGAGAGCAAAGCCGCCGTTCAATACGACGTCGTAATGGCCGTGTCCTCA
TGTTCGAGTCAAAAAATTTTGTCCTTCTCTTCTTCATGTTCGTCTTTTGA
GTGCCGGTCCGATCCCGACTTCTCGGGCTCCGCTCGGTTTGATAAACCGA
GGATCTCGGCGGCGCGAGTCATTGGAGCCTCGACGGCGTCGTTTAGCGGC
GTGTCGTCTCTGATTTTCAGGTTTCCGCCGAACTTCGTACGCCAGCTTAG
CACGAAGGCCAGGAGGAACTGCAGCAACATCGGCGTGGCGCAAATCGTGG
CGGCTTCGTGGTCGAACAGTGTGGGTTCCGGCTCTAACTCGGCGGCGGCT
ACAGCCGCTTCCGCTGCCCCGGCCCCGCCCGCCCCCGTCGAGATTACGAG
CGGCGATGACATCGCGCTGGTTGACGGATTGAAAAATGTACAGCTGGAAG
CCCTCGCTGATTTGAAAAACGAGGCTTCGTTTTTAAGCTCCGATGGGAGC
CTTGCAATTCATGCCGGTGAAAGATTAGGTCGTGGTATAGTAACAGATGC
AATTACTACCCCAGTGGTGAATACTTCTGCTTACTTCTTTAAGAAAACTG
CTGAGCTTATTGATTTCAAGGAGAAACGTCGTGCAAGTTTTGAATATGGG
AGGTATGGAAACCCAACAACTGTGGTCGTTGAGGAGAAGATGAGTGCACT
T
back to top