CK939742

Overview
NameCK939742
Unique NameCK939742
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK939742_ssr684 microsatellite CK939742_ssr684:684..695. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7023 contig Csv1_Contig7023:1..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939742 vs. ExPASy Swiss-Prot
Match: TRXM4_ARATH (Thioredoxin M-type 4, chloroplastic OS=Arabidopsis thaliana GN=At3g15360 PE=1 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 3.600e-46
Identity = 88/152 (57.89%), Postives = 111/152 (73.03%), Query Frame = 3
Query:  186 KFAEFRGLKVRPXXXXXXXXXXXXXXXXLRRGAQIVCEAQET---AVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYAGRLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSI*KFL 632
            +F EFRGLK                   + RG +I CEAQ+T   AVEVP ++D+ WQ+ VL+S  PVLVEFWAPWCGPCRMIHPI+D+L+K +AG+ K YK+NTDESP+ A RYGIRS+PTV+IFK GEKKD++IGAVP+ TL  +I +FL
Sbjct:   40 RFLEFRGLKSSRSLVTQSASLGANRRTRIARGGRIACEAQDTTAAAVEVPNLSDSEWQTKVLESDVPVLVEFWAPWCGPCRMIHPIVDQLAKDFAGKFKFYKINTDESPNTANRYGIRSVPTVIIFKGGEKKDSIIGAVPRETLEKTIERFL 191          
BLAST of CK939742 vs. ExPASy Swiss-Prot
Match: TRXM_BRANA (Thioredoxin M-type, chloroplastic OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.852e-43
Identity = 78/121 (64.46%), Postives = 102/121 (84.30%), Query Frame = 3
Query:  270 LRRGAQIVCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYAGRLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSI*KFL 632
            LRRG  I+CEAQ+TA  +P V D+TW+SLVL +  PV+V+FWAPWCGPC+MI PI++EL++QY G++K +K+NTD+SP+   +YG+RSIPT+MIF  GEKKDT+IGAVPK+TL TSI KFL
Sbjct:   57 LRRGG-IICEAQDTATGIPMVNDSTWESLVLKADEPVVVDFWAPWCGPCKMIDPIVNELAQQYTGKIKFFKLNTDDSPATPGKYGVRSIPTIMIFVKGEKKDTIIGAVPKTTLATSIDKFL 176          
BLAST of CK939742 vs. ExPASy Swiss-Prot
Match: TRXM1_ARATH (Thioredoxin M-type 1, chloroplastic OS=Arabidopsis thaliana GN=At1g03680 PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.299e-43
Identity = 79/121 (65.29%), Postives = 99/121 (81.82%), Query Frame = 3
Query:  270 LRRGAQIVCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYAGRLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSI*KFL 632
            LRRG  ++CEAQ+TA  +P V D+TW SLVL +  PV V+FWAPWCGPC+MI PI++EL+++YAG+ K YK+NTDESP+   +YG+RSIPT+MIF NGEKKDT+IGAV K TL TSI KFL
Sbjct:   61 LRRG--VICEAQDTATGIPVVNDSTWDSLVLKADEPVFVDFWAPWCGPCKMIDPIVNELAQKYAGQFKFYKLNTDESPATPGQYGVRSIPTIMIFVNGEKKDTIIGAVSKDTLATSINKFL 179          
BLAST of CK939742 vs. ExPASy Swiss-Prot
Match: TRXM_PEA (Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.198e-41
Identity = 74/115 (64.35%), Postives = 97/115 (84.35%), Query Frame = 3
Query:  288 IVCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYAGRLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSI*KFL 632
            ++  A+E   EV  V D++W  LV+ S +PVLV+FWAPWCGPCRMI PIIDEL+K+YAG++KCYK+NTDESP+ AT+YGIRSIPTV+ FKNGE+KD+VIGAVPK+TL+  + K++
Sbjct:   58 VLLHAREAVNEVQVVNDSSWDELVIGSETPVLVDFWAPWCGPCRMIAPIIDELAKEYAGKIKCYKLNTDESPNTATKYGIRSIPTVLFFKNGERKDSVIGAVPKATLSEKVEKYI 172          
BLAST of CK939742 vs. ExPASy Swiss-Prot
Match: TRXM2_ARATH (Thioredoxin M-type 2, chloroplastic OS=Arabidopsis thaliana GN=At4g03520 PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 4.554e-41
Identity = 74/121 (61.16%), Postives = 99/121 (81.82%), Query Frame = 3
Query:  270 LRRGAQIVCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYAGRLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSI*KFL 632
            LRR   +VCEAQET  ++  V D+TW SLVL +  PV+V+FWAPWCGPC+MI P++++L++ Y G++K YK+NTDESP+   +YG+RSIPT+MIF  GEKKDT+IGAVPK+TLT+S+ KFL
Sbjct:   67 LRRA--VVCEAQETTTDIQVVNDSTWDSLVLKATGPVVVDFWAPWCGPCKMIDPLVNDLAQHYTGKIKFYKLNTDESPNTPGQYGVRSIPTIMIFVGGEKKDTIIGAVPKTTLTSSLDKFL 185          
BLAST of CK939742 vs. ExPASy Swiss-Prot
Match: TRXM_ORYSJ (Thioredoxin M-type, chloroplastic OS=Oryza sativa subsp. japonica GN=TRXM PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.767e-41
Identity = 75/121 (61.98%), Postives = 95/121 (78.51%), Query Frame = 3
Query:  270 LRRGAQIVCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYAGRLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSI*KFL 632
            LR  ++  C+      EV    +  W S+VL S +PVLVEFWAPWCGPCRMI P+IDEL+K+Y G++KC KVNTD+SP+IAT YGIRSIPTV++FKNGEKK++VIGAVPK+TL T I K++
Sbjct:   50 LRPASRFACQCSNVVDEVVVADEKNWDSMVLGSEAPVLVEFWAPWCGPCRMIAPVIDELAKEYVGKIKCCKVNTDDSPNIATNYGIRSIPTVLMFKNGEKKESVIGAVPKTTLATIIDKYV 170          
BLAST of CK939742 vs. ExPASy Swiss-Prot
Match: TRXM_SPIOL (Thioredoxin M-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 2.260e-40
Identity = 72/119 (60.50%), Postives = 98/119 (82.35%), Query Frame = 3
Query:  276 RGAQIVCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYAGRLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSI*KFL 632
            R + +VC+A E   EV  V D++W+  VL+S  PV+V+FWAPWCGPC++I P+IDEL+K+Y+G++  YK+NTDE+P IAT+Y IRSIPTV+ FKNGE+K+++IGAVPKSTLT SI K+L
Sbjct:   61 RYSSVVCKASEAVKEVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKYL 179          
BLAST of CK939742 vs. ExPASy Swiss-Prot
Match: TRXM_MAIZE (Thioredoxin M-type, chloroplastic OS=Zea mays GN=TRM1 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.270e-39
Identity = 72/114 (63.16%), Postives = 91/114 (79.82%), Query Frame = 3
Query:  291 VCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYAGRLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSI*KFL 632
            VC+++    EV    +  W  LV+   +PVLVEFWAPWCGPCRMI P+IDEL+K YAG++ C KVNTD+SP++A+ YGIRSIPTV+IFK GEKK++VIGAVPKSTLTT I K++
Sbjct:   51 VCQSKNAVDEVVVADEKNWDGLVMACETPVLVEFWAPWCGPCRMIAPVIDELAKDYAGKITCCKVNTDDSPNVASTYGIRSIPTVLIFKGGEKKESVIGAVPKSTLTTLIDKYI 164          
BLAST of CK939742 vs. ExPASy Swiss-Prot
Match: TRXM_WHEAT (Thioredoxin M-type, chloroplastic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.115e-38
Identity = 71/120 (59.17%), Postives = 94/120 (78.33%), Query Frame = 3
Query:  273 RRGAQIVCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYAGRLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSI*KFL 632
            RR ++ VC+ +    EV    +  W ++V+   SPVLVEFWAPWCGPCRMI P+IDEL+K Y G++KC KVNTD+ P+IA+ YGIRSIPTV++FK+GEKK++VIGAVPK+TL T I K++
Sbjct:   54 RRPSRFVCKCKNVVDEVIVADEKNWDNMVIACESPVLVEFWAPWCGPCRMIAPVIDELAKDYVGKIKCCKVNTDDCPNIASTYGIRSIPTVLMFKDGEKKESVIGAVPKTTLCTIIDKYI 173          
BLAST of CK939742 vs. ExPASy Swiss-Prot
Match: THIO1_SYNE7 (Thioredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=trxA PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 6.369e-35
Identity = 64/102 (62.75%), Postives = 89/102 (87.25%), Query Frame = 3
Query:  327 AVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYAGRLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSI*KFL 632
            AVTDAT++  VL+S  PVLV+FWAPWCGPCRM+ P++DE+++QY+ ++K  KVNTDE+PS+A++YGIRSIPT+MIFK+G++ DTV+GAVPK+TL  ++ K L
Sbjct:    6 AVTDATFKQEVLESSIPVLVDFWAPWCGPCRMVAPVVDEIAQQYSDQVKVVKVNTDENPSVASQYGIRSIPTLMIFKDGQRVDTVVGAVPKTTLANTLDKHL 107          
The following BLAST results are available for this feature:
BLAST of CK939742 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
TRXM4_ARATH3.600e-4657.89Thioredoxin M-type 4, chloroplastic OS=Arabidopsis... [more]
TRXM_BRANA2.852e-4364.46Thioredoxin M-type, chloroplastic OS=Brassica napu... [more]
TRXM1_ARATH8.299e-4365.29Thioredoxin M-type 1, chloroplastic OS=Arabidopsis... [more]
TRXM_PEA1.198e-4164.35Thioredoxin M-type, chloroplastic OS=Pisum sativum... [more]
TRXM2_ARATH4.554e-4161.16Thioredoxin M-type 2, chloroplastic OS=Arabidopsis... [more]
TRXM_ORYSJ7.767e-4161.98Thioredoxin M-type, chloroplastic OS=Oryza sativa ... [more]
TRXM_SPIOL2.260e-4060.50Thioredoxin M-type, chloroplastic OS=Spinacia oler... [more]
TRXM_MAIZE7.270e-3963.16Thioredoxin M-type, chloroplastic OS=Zea mays GN=T... [more]
TRXM_WHEAT2.115e-3859.17Thioredoxin M-type, chloroplastic OS=Triticum aest... [more]
THIO1_SYNE76.369e-3562.75Thioredoxin-1 OS=Synechococcus elongatus (strain P... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004746_C04 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIF_C04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939742 ID=CK939742; Name=CK939742; organism=Citrus sinensis; type=EST; length=698bp
GGGGACCACAAGCATCCCNNAGCTCTCTTTAGATCTCCACTTTTTGTTCC
GACGTCCGACCTGCCTCTGTTCCGATGGCCACCGTGCTCGAGTGCGTCGC
CGTTCCTCGCGCTTCGGCTTCTTCGGTTTTCTCCTCCCCGGGTAAACTTT
CGTCTTCTTCCATTAATTCGATCTCGGGCCGTCGGAAATTCGCCGAGTTC
AGGGGCCTTAAGGTCAGACCTGTTCGCTCGTTCGGATCGGTGAGTCAGGG
TTCGAGTTCGAGCTTCAGACTCCGTCGCGGTGCGCAAATCGTGTGCGAGG
CTCAAGAAACTGCCGTTGAAGTGCCTGCTGTGACAGATGCAACATGGCAA
TCACTTGTTCTTGACTCTGGATCACCTGTGCTTGTTGAATTCTGGGCTCC
ATGGTGCGGGCCTTGCCGGATGATCCACCCTATTATTGATGAGCTATCAA
AGCAATATGCGGGGAGGCTAAAATGCTATAAGGTTAATACTGATGAGAGT
CCTTCAATTGCTACTAGATATGGAATTAGGAGCATCCCAACTGTCATGAT
ATTTAAGAATGGCGAGAAGAAAGATACAGTGATTGGTGCTGTTCCTAAAT
CCACTTTGACCACCAGCATATAGAAATTCTTGTAGACATGGTAAGTANNN
GACGCGTTTGCTAGAAACGGGCTCTCTGTAGCATTTGTTTGTTTGCCT
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