CK939738

Overview
NameCK939738
Unique NameCK939738
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK939738_ssr137 microsatellite CK939738_ssr137:137..151. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1868 contig Csv1_Contig1868:1..562. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939738 vs. ExPASy Swiss-Prot
Match: ARG2_PHAAU (Indole-3-acetic acid-induced protein ARG2 OS=Phaseolus aureus GN=ARG2 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.924e-17
Identity = 47/94 (50.00%), Postives = 56/94 (59.57%), Query Frame = 1
Query:  169 MAHSFSNAKLFSALVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXXMLKKPAEEMTGSSEKVSWVPDPVTGVYRPENLANELDGADLRAMFL 450
            MA SF+N K+ SALVADG SN   + G++AA+                M+ K  EE     EKVSWVPDPVTG YRPEN  NE+D AD+RA  L
Sbjct:    1 MARSFTNVKVLSALVADGFSNTTTRHGFAAAAAATQSATRGGASIGGNMVPKSGEEKVRGGEKVSWVPDPVTGYYRPEN-TNEIDVADMRATVL 93          
BLAST of CK939738 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.910e-12
Identity = 43/96 (44.79%), Postives = 54/96 (56.25%), Query Frame = 1
Query:  169 MAHSFSNAKLFSALVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXXMLKKPAEEMTGSSEKVSWVPDPVTGVYRPENLANELDGADLRAMFLKH 456
            MA S   AKL  A VADGIS +I +RGY+AA+                 L+    E +G+S   +W PDP+TG YRPEN A E+D A+LR M L H
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKND--LRPAVREDSGASS--AWAPDPITGYYRPENRAVEIDPAELREMLLNH 92          
BLAST of CK939738 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.463e-11
Identity = 39/100 (39.00%), Postives = 52/100 (52.00%), Query Frame = 1
Query:  169 MAHSFSNAKLFSALVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXXMLKKPAEEMTGSSE----KVSWVPDPVTGVYRPENLANELDGADLRAMFLKH 456
            MA S S+ KL  A + DG+  +I +RGYS A                 + ++ A + + SSE      +W PDPVTG YRPEN   E+D A+LR M L H
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNH 100          
The following BLAST results are available for this feature:
BLAST of CK939738 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ARG2_PHAAU3.924e-1750.00Indole-3-acetic acid-induced protein ARG2 OS=Phase... [more]
LEA5_CITSI2.910e-1244.79Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI2.463e-1139.00Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004746_D07 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIF_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939738 ID=CK939738; Name=CK939738; organism=Citrus sinensis; type=EST; length=563bp
GGGGGAACCCATAAACACAAACACTTTGAGGGGATTTTCGCGCTACGAAG
AGGGAAGTTTCTTTAGCTGCTGCTGAAGGCTTTTCGATAGAAAGAAAAGA
AGGAAATTGCTTTCTGCAGCAGCGTTAAGATCTCTTATCATCATCATCAT
CCCACATAACTAAGAAAAATGGCTCACTCTTTCTCAAACGCTAAGCTTTT
CTCTGCTCTCGTCGCTGACGGAATCTCTAACGCCATCTACAAAAGAGGAT
ACTCGGCGGCATCACAAGGCGCTGTGTCGCGGGCAACAGGGGGAGCTAGG
AGTGCTGCTGCGATGTTGAAGAAACCAGCAGAAGAGATGACAGGATCCAG
TGAGAAGGTCTCGTGGGTCCCAGACCCAGTCACTGGTGTCTACAGGCCGG
AGAATCTCGCCAACGAGCTCGATGGGGCCGACCTCAGAGCCATGTTCTTG
AAGCACAACAACTGATCATCAAAATTAATAAGTATTATTATTAATATATA
TTAATTCGGACATGGAAACTGAGGAAGGACGAAAGAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
back to top