CK939734

Overview
NameCK939734
Unique NameCK939734
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12771 contig Csv1_Contig12771:75..951. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_ARATH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=ISPF PE=1 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 2.032e-82
Identity = 148/159 (93.08%), Postives = 156/159 (98.11%), Query Frame = 3
Query:  294 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMKK 770
            LPFR+GHGFDLHRLEPGYPLIIGGI +PH+RGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGA SSVFIKEAVRLMDEAGYEIGNLDATLILQRPK+SP+KETIR+NLS+LLGADP+VVNLKAKTHEKVDSLGE RSIAAHTVILLMKK
Sbjct:   73 LPFRIGHGFDLHRLEPGYPLIIGGIVIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMDEAGYEIGNLDATLILQRPKISPHKETIRSNLSKLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVILLMKK 231          
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_CATRO (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Catharanthus roseus GN=ISPF PE=2 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 6.536e-81
Identity = 144/159 (90.57%), Postives = 153/159 (96.23%), Query Frame = 3
Query:  294 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMKK 770
            L FRVGHGFDLHRLEPGYPLIIGGIN+PH+RGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPD+DPKWKGAPSSVFIKEAVRLMDEAGYE+GNLDATLILQRPK+SP+KE IR NL +LLGADP VVNLKAKTHEKVDSLGE RSIAAHTV+LLM+K
Sbjct:   78 LSFRVGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDTDPKWKGAPSSVFIKEAVRLMDEAGYELGNLDATLILQRPKVSPHKEAIRQNLCQLLGADPCVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRK 236          
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_LYSSC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Lysinibacillus sphaericus (strain C3-41) GN=ispF PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.877e-41
Identity = 80/157 (50.96%), Postives = 111/157 (70.70%), Query Frame = 3
Query:  300 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMKK 770
            FR+G GFD+H  E G PLIIGGI +PHE+G   HSD DVLLH V DA LGA+G  DIG+ FPD+DP +K A S+  ++   +++++ GY +GN+D T++ QRPK++PY E ++  ++ELL A+P+ VN+KA T E++   G    IAA   ILLMKK
Sbjct:    2 FRIGQGFDVHAFEEGRPLIIGGITIPHEKGLVGHSDADVLLHTVTDAALGAIGEGDIGRHFPDTDPAFKDADSAKLLEYIWKIVEDKGYILGNVDCTIMAQRPKMAPYIEQMQNRIAELLHAEPSQVNVKATTTERLGFTGREEGIAAMATILLMKK 158          
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPDF_ERYLH (Bifunctional enzyme ispD/ispF OS=Erythrobacter litoralis (strain HTCC2594) GN=ispDF PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 6.612e-41
Identity = 76/159 (47.80%), Postives = 108/159 (67.92%), Query Frame = 3
Query:  294 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMKK 770
            LP RVG GFD+H+LE G  L +GGI + H++G   HSD DV LH +VDA+LGA+G  DIG  FP SDP+WKGA SS FI+ A +L+DEAGY +GN+D T+I + P++ P+++ +   ++ELL   P  +++KA T EK+   G    IAA     +++K
Sbjct:  224 LPVRVGTGFDVHKLEAGEELWLGGIRLEHDKGLAGHSDADVALHAIVDALLGAIGKGDIGDHFPPSDPQWKGAASSAFIEHAAKLVDEAGYRVGNIDLTIICEAPRIGPHRDAMGQRIAELLATSPDAISVKATTTEKLGFTGRGEGIAAQAAATVVRK 382          
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_RALME (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=ispF PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.286e-40
Identity = 79/156 (50.64%), Postives = 109/156 (69.87%), Query Frame = 3
Query:  303 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMKK 770
            R+G G+D+H L PG  LI+GG+++PH+RG   HSD D LLH V DA+ GA  L DIG+ FPD+DP + GA S V ++EAVR + EAGYEIGN+DAT+I Q+PKL+P+   +  NL+E LG   T  N+KAKT+EK+   G+   I A   +L+ ++
Sbjct:    7 RIGQGYDVHALVPGRKLILGGVDIPHDRGLLGHSDADALLHAVTDALFGAAALGDIGRHFPDTDPNFAGADSRVLLREAVRRVREAGYEIGNVDATVIAQKPKLAPHISGMVANLAEDLGLPVTRCNVKAKTNEKLGFEGKEEGIVAQAAVLIYRR 162          
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_BACWK (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus weihenstephanensis (strain KBAB4) GN=ispF PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 9.548e-40
Identity = 78/157 (49.68%), Postives = 106/157 (67.52%), Query Frame = 3
Query:  300 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMKK 770
            FR+G GFD+H    G PLIIGGI +PHE+G   HSD DVLLH + DA LGA+   DIG+ FPD+DP +K A S+V +++    + E GYE+GNLD T+I Q+PK++P+ E++R  +SELL      +N+KA T EK+   G    IA+  V+LL KK
Sbjct:    2 FRIGQGFDVHEFAEGRPLIIGGITIPHEKGLIGHSDADVLLHTIADACLGAIAAGDIGKHFPDTDPAFKDADSAVLLQKVWEFVREQGYELGNLDCTIIAQKPKMAPHIESMRKRISELLETSIDNINVKATTTEKLGFTGREEGIASQAVVLLQKK 158          
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_BACHK (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus thuringiensis subsp. konkukian GN=ispF PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 9.548e-40
Identity = 78/157 (49.68%), Postives = 106/157 (67.52%), Query Frame = 3
Query:  300 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMKK 770
            FR+G GFD+H    G PLIIGGI +PHE+G   HSD DVLLH + DA LGA+   DIG+ FPD+DP +K A S+V +++    + E GYE+GNLD T+I Q+PK++P+ E++R  +SELL      +N+KA T EK+   G    IA+  V+LL KK
Sbjct:    2 FRIGQGFDVHEFAEGRPLIIGGITIPHEKGLIGHSDADVLLHTIADACLGAIAAGDIGKHFPDTDPAFKDADSAVLLQKVWEFVREQGYELGNLDCTIIAQKPKMAPHIESMRKRISELLETSIDNINVKATTTEKLGFTGREEGIASQAVVLLQKK 158          
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_BACCZ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus cereus (strain ZK / E33L) GN=ispF PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 9.548e-40
Identity = 78/157 (49.68%), Postives = 106/157 (67.52%), Query Frame = 3
Query:  300 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMKK 770
            FR+G GFD+H    G PLIIGGI +PHE+G   HSD DVLLH + DA LGA+   DIG+ FPD+DP +K A S+V +++    + E GYE+GNLD T+I Q+PK++P+ E++R  +SELL      +N+KA T EK+   G    IA+  V+LL KK
Sbjct:    2 FRIGQGFDVHEFAEGRPLIIGGITIPHEKGLIGHSDADVLLHTIADACLGAIAAGDIGKHFPDTDPAFKDADSAVLLQKVWEFVREQGYELGNLDCTIIAQKPKMAPHIESMRKRISELLETSIDNINVKATTTEKLGFTGREEGIASQAVVLLQKK 158          
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_BACCR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=ispF PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 9.548e-40
Identity = 78/157 (49.68%), Postives = 106/157 (67.52%), Query Frame = 3
Query:  300 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMKK 770
            FR+G GFD+H    G PLIIGGI +PHE+G   HSD DVLLH + DA LGA+   DIG+ FPD+DP +K A S+V +++    + E GYE+GNLD T+I Q+PK++P+ E++R  +SELL      +N+KA T EK+   G    IA+  V+LL KK
Sbjct:    2 FRIGQGFDVHEFAEGRPLIIGGITIPHEKGLIGHSDADVLLHTIADACLGAIAAGDIGKHFPDTDPAFKDADSAVLLQKVWEFVREQGYELGNLDCTIIAQKPKMAPHIESMRKRISELLETSIDNINVKATTTEKLGFTGREEGIASQAVVLLQKK 158          
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_BACCQ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus cereus (strain Q1) GN=ispF PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 9.548e-40
Identity = 78/157 (49.68%), Postives = 106/157 (67.52%), Query Frame = 3
Query:  300 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMKK 770
            FR+G GFD+H    G PLIIGGI +PHE+G   HSD DVLLH + DA LGA+   DIG+ FPD+DP +K A S+V +++    + E GYE+GNLD T+I Q+PK++P+ E++R  +SELL      +N+KA T EK+   G    IA+  V+LL KK
Sbjct:    2 FRIGQGFDVHEFAEGRPLIIGGITIPHEKGLIGHSDADVLLHTIADACLGAIAAGDIGKHFPDTDPAFKDADSAVLLQKVWEFVREQGYELGNLDCTIIAQKPKMAPHIESMRKRISELLETSIDNINVKATTTEKLGFTGREEGIASQAVVLLQKK 158          
The following BLAST results are available for this feature:
BLAST of CK939734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_ARATH2.032e-8293.082-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CATRO6.536e-8190.572-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_LYSSC3.877e-4150.962-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_ERYLH6.612e-4147.80Bifunctional enzyme ispD/ispF OS=Erythrobacter lit... [more]
ISPF_RALME4.286e-4050.642-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACWK9.548e-4049.682-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACHK9.548e-4049.682-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACCZ9.548e-4049.682-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACCR9.548e-4049.682-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACCQ9.548e-4049.682-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004746_D02 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIF_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939734 ID=CK939734; Name=CK939734; organism=Citrus sinensis; type=EST; length=877bp
GGGGATATCGAGCAGACAGCAGAGCACGAACAGCGTCTCTCCTCTCTTCG
TAAAATTAGATGGTGTTGACGATGGCCGCTCAATCATACACCACCACTCC
TCTCCACAGCAAAATTACGAATAAGCCACTATGTCCTCCTCCGTTGAGTT
TGAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCACAACACAGTCAACG
TCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCATTTCTTCCATCGAAGT
TAAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCAAAATCACTGCCTT
TTCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGAGCCTGGCTACCCT
CTGATCATCGGTGGAATCAATGTTCCCCACGAGAGAGGCTGCGAGGCTCA
CTCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGATGCAATTTTGGGAG
CATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGATTCTGATCCTAAG
TGGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAGCTGTGAGACTCAT
GGATGAGGCCGGCTATGAGATTGGCAACTTGGATGCCACGCTGATTCTTC
AAAGACCAAAATTGAGCCCATACAAGGAGACTATCCGAACCAACTTGTCT
GAACTGCTAGGAGCAGACCCCACCGTTGTAAATCTGAAAGCGAAGACTCA
TGAAAAAGTTGATAGCCTTGGTGAANNNCGAAGTATTGCAGCTCACACTG
TGATCCTTCTCATGAAGAAGTAAAATAAACGATTTGGGAATTGTCTTAAA
TGTAGCAGTTGTATCCTATTATCATTGTTGTATTTGTATTCTGCTTACAA
AGACTATTCACTTGGTATAGATTTCCA
back to top