CK939733

Overview
NameCK939733
Unique NameCK939733
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939733 vs. ExPASy Swiss-Prot
Match: FANCL_MOUSE (E3 ubiquitin-protein ligase FANCL OS=Mus musculus GN=Fancl PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.231e-28
Identity = 59/195 (30.26%), Postives = 101/195 (51.79%), Query Frame = 1
Query:  121 VGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQVNLGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRWNKDKPFVENVANLLETQLPRPPEHENNYQQVECGICYAQFL 705
            +GW+ L  +      +  +  D  GR H + ++L   YP  PP    D P  F++ W+ +S L D+  QF   LE L+  W+++DEID+  WV++ + P R+   R++ LG N  I + +    P+ LPE  F+G+D +   L      +   W+ +   ++N+ ++LE   P     E +   ++CGICYA+ L
Sbjct:  121 IGWDKLACVESSFSTIKLKADDASGRKHLITVKLKAKYPVEPPDCVVDFPVPFSVSWTPQSSLVDVYSQFLVALETLKVFWDVMDEIDEKTWVLEPEKPPRSATARRIALGKNVSIAIEVDPRHPTMLPEFCFLGADHVTKPLGMKLSGSIHLWDPENSLLQNLKDVLEIDFPARSILEESDFSMDCGICYARHL 315          
BLAST of CK939733 vs. ExPASy Swiss-Prot
Match: FANCL_HUMAN (E3 ubiquitin-protein ligase FANCL OS=Homo sapiens GN=FANCL PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.165e-27
Identity = 60/192 (31.25%), Postives = 98/192 (51.04%), Query Frame = 1
Query:  121 VGWEHLVRLSEDLKFLSFRVIDKKGRVHCMEIQLDKNYPRSPPSISADVPYIFNLKWSRKSRLKDLLQQFREHLEKLQEIWNILDEIDKSLWVIDLKNPSRANVCRQVNLGYNCIIMLSIHIDDPSSLPECRFMGSDPMVNSLRKTWQRNSKRWNKDKPFVENVANLLETQLPRPPEHENNYQQVECGICYA 696
            +GW+ LV        +  +  D  GR H + ++L   YP   P    D P  F   W+ +S L  +  QF   +E L+  W+++DEID+  WV++ + P R+   R++ LG N  I + +    P+ LPEC F+G+D +V  L     RN   W+ +   ++N+ ++LE   P     E +   ++CGICYA
Sbjct:  121 LGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDFPVPFCASWTPQSSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIALGNNVSINIEVDPRHPTMLPECFFLGADHVVKPLGIKLSRNIHLWDPENSVLQNLKDVLEIDFPARAILEKSDFTMDCGICYA 312          
The following BLAST results are available for this feature:
BLAST of CK939733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FANCL_MOUSE5.231e-2830.26E3 ubiquitin-protein ligase FANCL OS=Mus musculus ... [more]
FANCL_HUMAN1.165e-2731.25E3 ubiquitin-protein ligase FANCL OS=Homo sapiens ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004746_C12 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIF_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939733 ID=CK939733; Name=CK939733; organism=Citrus sinensis; type=EST; length=772bp
GGGGGCAGCCGGATTGTTTTTCATTTTTTTTCCAGCGGAAATCAAATGGA
GCAGAGTAGATGCAGAGAATCGGCCGATTCCTCGTCATTTAGCCGCTCGG
TCTACTCTGAGATAGAAGAAGTTGGATGGGAACATCTGGTGAGGTTGAGC
GAAGATCTGAAGTTCCTTAGTTTTCGTGTTATAGATAAGAAGGGAAGAGT
GCATTGCATGGAAATTCAATTGGATAAGAATTATCCTAGAAGCCCTCCTT
CAATTTCGGCGGACGTGCCATATATATTTAATCTAAAATGGTCAAGAAAA
TCAAGATTGAAAGACTTGCTGCAGCAGTTCAGGGAGCATCTGGAGAAGCT
TCAGGAAATTTGGAATATTTTGGATGAGATTGATAAATCTCTTTGGGTTA
TTGACCTGAAGAACCCATCTCGTGCCAATGTTTGTCGCCAAGTTAATTTG
GGTTATAATTGCATCATCATGTTGTCTATTCACATTGATGATCCTAGTTC
CTTACCTGAATGCCGTTTTATGGGTTCTGATCCGATGGTGAATTCCTTGA
GAAAGACGTGGCAAAGAAATAGTAAGAGATGGAACAAGGACAAACCATTT
GTGGAAAATGTTGCAAATCTTCTGGAGACTCAACTACCAAGACCCCCAGA
GCATGAGAATAATTATCAGCAAGTTGAATGTGGGATTTGTTATGCTCAAT
TTCTTCCTATTGATGAAGAGCTTGGAGCTAAGAGTGGAGGCGGAACTGAT
TATACATGNNNTAATTCCAGTT
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