CK939728

Overview
NameCK939728
Unique NameCK939728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length833
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2212 contig Csv1_Contig2212:1..833. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK939728 vs. ExPASy Swiss-Prot
Match: PP332_ARATH (Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana GN=EMB1417 PE=2 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 7.936e-81
Identity = 148/200 (74.00%), Postives = 169/200 (84.50%), Query Frame = 3 
Query:  255 MLSLSYSLPPF--------TKIFEPIKISRNARSLVVCAARGPRPRYPRVWKARKRIGTISKSAKLVTCIKGLSNVEEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP 830
            MLSL YSLP          TK+F     ++   ++VVCAARGPRPR PRVWK RKRIGTISK+AK++ CIKGLSNV+EEVYGALDSFIAWELEFPL+ VKKAL  LE+EK+WK+IIQVTKWMLSKGQGRTMGTYF LLNALAED RLDEAEELW K+F++HLEGTPR FF+KMISIYY R MH+K+FE+FADMEELGV+P
Sbjct:    1 MLSLRYSLPYLLLQTRESSTKLF-----TKKPNNVVVCAARGPRPRSPRVWKTRKRIGTISKAAKMIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTKWMLSKGQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRDMHQKLFEVFADMEELGVKP 195
[Close]
BLAST of CK939728 vs. ExPASy Swiss-Prot
Match: PP322_ARATH (Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidopsis thaliana GN=At4g18975 PE=2 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 8.308e-38
Identity = 75/151 (49.67%), Postives = 97/151 (64.24%), Query Frame = 3 
Query:  378 VWKARKRIGTISKSAKLVTCIKGLSNVEEEVYGALDSFIAWELEFPLITVKKALKTLENEKDWKRIIQVTKWMLSKGQGRTMGTYFLLLNALAEDGRLDEAEELWTKIFLDHLEGTPRIFFDKMISIYYNRGMHEKMFEIFADMEELGVRP 830
            +WK     G+  K+  LV  + GL N +E VYGAL+ ++AWE+EFP+I   KAL+ L     W R+IQ+ KWMLSKGQG TMGTY +LL A   D R DEAE LW  I   H    PR  F +MI++Y +  +H+K+ E+FADMEEL V P
Sbjct:   85 LWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKRSQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRLFARMIALYAHHDLHDKVIEVFADMEELKVSP 235
The following BLAST results are available for this feature:
BLAST of CK939728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PP332_ARATH7.936e-8174.00Pentatricopeptide repeat-containing protein At4g21... [more]
PP322_ARATH8.308e-3849.67Pentatricopeptide repeat-containing protein At4g18... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004746_E01 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIF_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939728 ID=CK939728; Name=CK939728; organism=Citrus sinensis; type=EST; length=833bp
GGGGGCTGTTTGGATGGTGGTAAAATAAAAAACGCAAGAAAAAGAAAACA
TTCCCTAGAAAATCAAAACACTGCAAGAGAAGAACGTCACCAGACGAAAG
GAAAGCAACAAGAAACTTTTCCATCAACTCATTATTATCTCTGCTCTCCA
CACAGATAATTTTTTTATTTCTCCAACTCTGCAGCTTATTTTTATTCAAG
AAATGCGAAATATTTTCATTTGCAAGTGACCAAATAGAGGTTCTAATTAA
GAAGATGCTTAGTTTGAGCTATTCTTTGCCTCCCTTCACGAAAATATTTG
AACCAATCAAGATTTCCAGAAATGCCAGAAGCCTTGTGGTATGTGCTGCT
AGAGGTCCACGACCTAGATATCCTCGGGTATGGAAAGCAAGAAAGAGAAT
TGGGACAATATCCAAGTCAGCCAAGCTTGTTACTTGTATAAAAGGATTGT
CGAATGTTGAAGAAGAAGTTTATGGGGCTCTTGACTCCTTTATTGCTTGG
GAATTAGAGTTTCCATTGATTACAGTAAAGAAAGCATTGAAGACTCTTGA
AAATGAAAAGGATTGGAAAAGGATAATTCAGGTGACAAAATGGATGCTGA
GCAAAGGTCAAGGGAGAACAATGGGCACCTATTTTTTGCTACTGAATGCT
TTAGCAGAGGATGGGAGACTTGATGAAGCCGAAGAACTTTGGACAAAAAT
ATTTTTGGATCACCTAGAAGGCACCCCACGTATTTTCTTTGATAAGATGA
TTTCTATTTACTATAACAGGGGCATGCACGAGAAGATGTTTGAGATATTT
GCCGATATGGAGGAGCTTGGTGTTAGACCNNAT
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