CK939722

Overview
NameCK939722
Unique NameCK939722
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5915 contig Csv1_Contig5915:1076..1768. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: RH56_ORYSJ (DEAD-box ATP-dependent RNA helicase 56 OS=Oryza sativa subsp. japonica GN=Os01g0549700 PE=2 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 1.342e-53
Identity = 104/110 (94.55%), Postives = 108/110 (98.18%), Query Frame = 3 
Query:    6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYMPS 335
            IHSGM+QEERLTRYK FKEG+KRILVATDLVGRGIDIERVNIVINYDMPDSAD+YLHRVGRAGRFGTKGLAITFVSSASDSD+LNQVQ RFEVDIKELPEQIDTSTYMPS
Sbjct:  323 IHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADSYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQIDTSTYMPS 432
[Close]
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: RH56_ARATH (DEAD-box ATP-dependent RNA helicase 56 OS=Arabidopsis thaliana GN=RH56 PE=2 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 1.342e-53
Identity = 104/110 (94.55%), Postives = 108/110 (98.18%), Query Frame = 3 
Query:    6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYMPS 335
            IHSGMSQEERLTRYK FKEG+KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFV+SASDS++LNQVQ RFEVDIKELPEQIDTSTYMPS
Sbjct:  318 IHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFEVDIKELPEQIDTSTYMPS 427
[Close]
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: RH15_ORYSJ (DEAD-box ATP-dependent RNA helicase 15 OS=Oryza sativa subsp. japonica GN=Os01g0550000 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.342e-53
Identity = 104/110 (94.55%), Postives = 108/110 (98.18%), Query Frame = 3 
Query:    6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYMPS 335
            IHSGM+QEERLTRYK FKEG+KRILVATDLVGRGIDIERVNIVINYDMPDSAD+YLHRVGRAGRFGTKGLAITFVSSASDSD+LNQVQ RFEVDIKELPEQIDTSTYMPS
Sbjct:  323 IHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADSYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQIDTSTYMPS 432
[Close]
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: RH15_ARATH (DEAD-box ATP-dependent RNA helicase 15 OS=Arabidopsis thaliana GN=RH15 PE=2 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 1.342e-53
Identity = 104/110 (94.55%), Postives = 108/110 (98.18%), Query Frame = 3 
Query:    6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYMPS 335
            IHSGMSQEERLTRYK FKEG+KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFV+SASDS++LNQVQ RFEVDIKELPEQIDTSTYMPS
Sbjct:  318 IHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFEVDIKELPEQIDTSTYMPS 427
[Close]
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: UAP56_DROME (ATP-dependent RNA helicase WM6 OS=Drosophila melanogaster GN=Hel25E PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.902e-40
Identity = 80/109 (73.39%), Postives = 94/109 (86.24%), Query Frame = 3 
Query:    3 GIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 329
            GIH GM+QEERL RY+ FK+  KRILVAT+L GRG+DIERVNIV NYDMP+ +DTYLHRV RAGRFGTKGLAITFVS  +D+ ILN+VQ RF+V+I ELPE+ID STY+
Sbjct:  313 GIHRGMTQEERLNRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNEVQDRFDVNISELPEEIDLSTYI 421
[Close]
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: SUB2_SCHPO (ATP-dependent RNA helicase uap56 OS=Schizosaccharomyces pombe GN=uap56 PE=1 SV=3)

HSP 1 Score: 164.081 bits (414), Expect = 6.465e-40
Identity = 79/108 (73.15%), Postives = 92/108 (85.19%), Query Frame = 3 
Query:    6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 329
            IH G+ QEER+ RYK FK+ +KRI VATD+ GRGIDIERVNIVINYDMPDS D+YLHRVGRAGRFGTKGLAITF SS  DS IL+++Q RFEV+I ELP++ID  +YM
Sbjct:  325 IHGGLPQEERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSEEDSQILDKIQERFEVNITELPDEIDVGSYM 432
[Close]
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: DDX39_HUMAN (ATP-dependent RNA helicase DDX39 OS=Homo sapiens GN=DDX39 PE=1 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 3.208e-39
Identity = 78/108 (72.22%), Postives = 93/108 (86.11%), Query Frame = 3 
Query:    6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 329
            IH GM+QEERL+RY+ FK+  +RILVAT+L GRG+DIERVNIV NYDMP+ +DTYLHRV RAGRFGTKGLAITFVS  +D+ ILN VQ RFEV++ ELPE+ID STY+
Sbjct:  316 IHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYI 423
[Close]
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: DDX39_RAT (ATP-dependent RNA helicase DDX39 OS=Rattus norvegicus GN=Ddx39 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.190e-39
Identity = 77/108 (71.30%), Postives = 93/108 (86.11%), Query Frame = 3 
Query:    6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 329
            IH GM+QEERL+RY+ FK+  +RILVAT+L GRG+DIERVNIV NYDMP+ +DTYLHRV RAGRFGTKGLA+TFVS  +D+ ILN VQ RFEV++ ELPE+ID STY+
Sbjct:  316 IHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYI 423
[Close]
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: DDX39_MOUSE (ATP-dependent RNA helicase DDX39 OS=Mus musculus GN=Ddx39 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.190e-39
Identity = 77/108 (71.30%), Postives = 93/108 (86.11%), Query Frame = 3 
Query:    6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 329
            IH GM+QEERL+RY+ FK+  +RILVAT+L GRG+DIERVNIV NYDMP+ +DTYLHRV RAGRFGTKGLA+TFVS  +D+ ILN VQ RFEV++ ELPE+ID STY+
Sbjct:  316 IHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYI 423
[Close]
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: UAP56_RAT (Spliceosome RNA helicase Bat1 OS=Rattus norvegicus GN=Bat1 PE=2 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 6.051e-38
Identity = 76/108 (70.37%), Postives = 91/108 (84.26%), Query Frame = 3 
Query:    6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 329
            IH GM QEERL+RY+ FK+  +RILVAT+L GRG+DIERVNI  NYDMP+ +DTYLHRV RAGRFGTKGLAITFVS  +D+ ILN VQ RFEV+I ELP++ID S+Y+
Sbjct:  317 IHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYI 424
The following BLAST results are available for this feature:
BLAST of CK939722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH56_ORYSJ1.342e-5394.55DEAD-box ATP-dependent RNA helicase 56 OS=Oryza sa... [more]
RH56_ARATH1.342e-5394.55DEAD-box ATP-dependent RNA helicase 56 OS=Arabidop... [more]
RH15_ORYSJ1.342e-5394.55DEAD-box ATP-dependent RNA helicase 15 OS=Oryza sa... [more]
RH15_ARATH1.342e-5394.55DEAD-box ATP-dependent RNA helicase 15 OS=Arabidop... [more]
UAP56_DROME2.902e-4073.39ATP-dependent RNA helicase WM6 OS=Drosophila melan... [more]
SUB2_SCHPO6.465e-4073.15ATP-dependent RNA helicase uap56 OS=Schizosaccharo... [more]
DDX39_HUMAN3.208e-3972.22ATP-dependent RNA helicase DDX39 OS=Homo sapiens G... [more]
DDX39_RAT4.190e-3971.30ATP-dependent RNA helicase DDX39 OS=Rattus norvegi... [more]
DDX39_MOUSE4.190e-3971.30ATP-dependent RNA helicase DDX39 OS=Mus musculus G... [more]
UAP56_RAT6.051e-3870.37Spliceosome RNA helicase Bat1 OS=Rattus norvegicus... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004746_F01 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIF_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939722 ID=CK939722; Name=CK939722; organism=Citrus sinensis; type=EST; length=693bp
GGGGCATCCATTCTGGCATGTCCCAAGAAGAAAGGTTGACGCGTTACAAA
GGTTTCAAGGAGGGGAACAAGAGGATTCTTGTGGCCACAGATTTGGTTGG
TAGGGGAATTGACATTGAGCGTGTCAACATTGTCATCAATTATGACATGC
CAGATTCTGCTGATACTTATCTGCACAGGGTTGGTAGAGCTGGTAGGTTT
GGCACCAAGGGCCTTGCAATTACCTTTGTATCATCTGCTTCAGACTCCGA
TATTCTCAATCAGGTTCAGGCAAGGTTTGAAGTAGATATAAAGGAGCTTC
CTGAGCAGATTGATACATCTACATACATGCCATCATAGTGGAGATCTGTT
CTCTGATGTGGAAAATTTGAGGCGCATGTGGAAGCAGGGTGCTGAAGGCC
CTTTATGTATTTGTTTCTTTAGATGAAGTCCAATGGCTTTCATATATGTT
GCCTTGGAGATTTGTCAGATGGATCCCTCTATTTTGTGGTTTTACGCTGC
CTTTTCTTGTTTTTGGGATTTGTAGCCTTTTAATACCTTCTGGGTACTGC
TGCTATTGGGAATGTTATTCAACTGGTACCTTGGCTTGTATTAGAGTTCC
TTGTGAGATAATTTTTATTGCACTGTTAATCGATTAGATTCTTAGACACC
AACTCTGGTCGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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