CX675720

Overview
NameCX675720
Unique NameCX675720
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX675720_ssr20 microsatellite CX675720_ssr20:20..37. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5521 contig Csv1_Contig5521:1..812. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675720 vs. ExPASy Swiss-Prot
Match: E133_ARATH (Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=2)

HSP 1 Score: 321.242 bits (822), Expect = 4.157e-87
Identity = 160/201 (79.60%), Postives = 182/201 (90.55%), Query Frame = 3
Query:  210 KDAFIGVNIGTDLSDMPSPTQVVALLKAQNIRHIRLYDADRAMLLALANTGIQVTISVPNDQLLGIGQSNATAANWVARNVAAHVPTTNITAIAVGSEVLTVLPNAGPVLVSALKFIHSALVAANLDDQIKVSTPHSSSIILDSFPPSQAFFNRSWDPVMVPLLKFLQSTGSYLMLNVYPYYDYMQSNEVIPLDYALFRPL 812
            +D+ IGVNIGT++++MPSPTQVVALLK+QNI  +RLYDADR+MLLA A+TG+QV ISVPNDQLLGI QSNATAANWV RNVAA+ P TNIT IAVGSEVLT L NA  VLVSALK+I +ALV ANLD QIKVSTPHSS+IILDSFPPSQAFFN++WDPV+VPLLKFLQSTGS L+LNVYPY+DY+QSN VIPLDYALF+PL
Sbjct:   19 QDSLIGVNIGTEVTNMPSPTQVVALLKSQNINRVRLYDADRSMLLAFAHTGVQVIISVPNDQLLGISQSNATAANWVTRNVAAYYPATNITTIAVGSEVLTSLTNAASVLVSALKYIQAALVTANLDRQIKVSTPHSSTIILDSFPPSQAFFNKTWDPVIVPLLKFLQSTGSPLLLNVYPYFDYVQSNGVIPLDYALFQPL 219          
BLAST of CX675720 vs. ExPASy Swiss-Prot
Match: E132_ARATH (Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana GN=At1g66250 PE=1 SV=2)

HSP 1 Score: 307.375 bits (786), Expect = 6.211e-83
Identity = 154/202 (76.24%), Postives = 177/202 (87.62%), Query Frame = 3
Query:  207 DKDAFIGVNIGTDLSDMPSPTQVVALLKAQNIRHIRLYDADRAMLLALANTGIQVTISVPNDQLLGIGQSNATAANWVARNVAAHVPTTNITAIAVGSEVLTVLPNAGPVLVSALKFIHSALVAANLDDQIKVSTPHSSSIILDSFPPSQAFFNRSWDPVMVPLLKFLQSTGSYLMLNVYPYYDYMQSNEVIPLDYALFRPL 812
            D+ ++IGVNIGTDLSDMP PTQVVALLKAQ IRHIRLY+AD  +L+ALANTGI+V IS+PNDQLLGIGQSN+TAANWV RNV AH P T ITA++VGSEVLT L NA PVLVSA+K +H+AL++ANLD  IKVSTP S+S+ILD FPPSQAFFNRS + V+VPLL FLQST SYLM+NVYPY DYMQSN VIPLDYALF+P+
Sbjct:   27 DEGSYIGVNIGTDLSDMPHPTQVVALLKAQEIRHIRLYNADPGLLIALANTGIKVIISIPNDQLLGIGQSNSTAANWVKRNVIAHYPATMITAVSVGSEVLTSLSNAAPVLVSAIKNVHAALLSANLDKLIKVSTPLSTSLILDPFPPSQAFFNRSLNAVIVPLLSFLQSTNSYLMVNVYPYIDYMQSNGVIPLDYALFKPI 228          
BLAST of CX675720 vs. ExPASy Swiss-Prot
Match: E134_ARATH (Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana GN=At3g13560 PE=1 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.489e-60
Identity = 113/199 (56.78%), Postives = 151/199 (75.88%), Query Frame = 3
Query:  216 AFIGVNIGTDLSDMPSPTQVVALLKAQNIRHIRLYDADRAMLLALANTGIQVTISVPNDQLLGIGQSNATAANWVARNVAAHVPTTNITAIAVGSEVLTVLPNAGPVLVSALKFIHSALVAANLDDQIKVSTPHSSSIILDSFPPSQAFFNRSWDPVMVPLLKFLQSTGSYLMLNVYPYYDYMQSNEVIPLDYALFRPL 812
            AFIGVNIGTDL++MP P+ +V LLK+Q I H+RLYDA+  ML A ANT I+V + V N+++L IG+  + AA WV +NVAA++P+TNITAIAVGSEVLT +P+  P+L SAL  IH ALVA+NL+ ++KVS+P S  I+   FPPS + F+ SW+  +  LL+FL++TGS+ MLN YPYY Y  +N + PLDYALF+ L
Sbjct:   24 AFIGVNIGTDLTNMPPPSDIVTLLKSQQITHVRLYDANSHMLKAFANTSIEVMVGVTNEEILKIGRFPSAAAAWVNKNVAAYIPSTNITAIAVGSEVLTTIPHVAPILASALNNIHKALVASNLNFKVKVSSPMSMDIMPKPFPPSTSTFSPSWNTTVYQLLQFLKNTGSFFMLNAYPYYGYTTANGIFPLDYALFKQL 222          
BLAST of CX675720 vs. ExPASy Swiss-Prot
Match: E1312_ARATH (Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana GN=At4g29360 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.227e-39
Identity = 80/194 (41.24%), Postives = 124/194 (63.92%), Query Frame = 3
Query:  222 IGVNIGTDLSDMPSPTQVVALLKAQNIRHIRLYDADRAMLLALANTGIQVTISVPNDQLLGIGQSNATAANWVARNVAAHVPTTNITAIAVGSEVLTVLPNAGPVLVSALKFIHSALVAANLDDQIKVSTPHSSSIILDSFPPSQAFFNRSWDPVMVPLLKFLQSTGSYLMLNVYPYYDYMQSNEVIPLDYALF 803
            IG+  G +  ++PSP +V  L++  NI+ +R+YDA+  +L A ANTGI++ I VPN  LL   Q  +    W++ N+  + P+T IT+I+VG EV     NA  +++ A++ IH+AL  + LD +IK+S+ HS +I+  SFPPS A F++     + P+L+FL    S  M+++YPYY Y  S E +PL+YALF
Sbjct:   27 IGICYGRNADNLPSPNRVSELIQHLNIKFVRIYDANIDVLKAFANTGIELMIGVPNADLLAFAQFQSNVDTWLSNNILPYYPSTKITSISVGLEVTEAPDNATGLVLPAMRNIHTALKKSGLDKKIKISSSHSLAILSRSFPPSSASFSKKHSAFLKPMLEFLVENESPFMIDLYPYYAYRDSTEKVPLEYALF 220          
BLAST of CX675720 vs. ExPASy Swiss-Prot
Match: E1311_ARATH (Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis thaliana GN=At1g32860 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.126e-34
Identity = 76/197 (38.58%), Postives = 121/197 (61.42%), Query Frame = 3
Query:  222 IGVNIGTDLSDMPSPTQVVALLKAQNIRHIRLYDADRAMLLALANTGIQVTISVPNDQLLGIGQSNATAANWVARNVAAHVPTTNITAIAVGSEVLTVLPNAGPV-LVSALKFIHSALVAANLDDQIKVSTPHSSSIILDSFPPSQAFFNRSWDPVMVPLLKFLQSTGSYLMLNVYPYYDYMQSNEVIPLDYALFRP 809
            IGVN G    ++PSPT V+ L+K+     ++LYDA+  +L A +NTGI+  I + N+ L  + +  + A  W+ +NV   +P TNIT I +G+E+L +  ++    L+ A++ +HSAL+ A L DQI V+T HS SI+  SFPPS   F       + P+L+F + T S  ++N YP++ Y  + + +PLD+ LF+P
Sbjct:   29 IGVNYGQIGDNLPSPTDVIPLIKSIGATKVKLYDANPQILKAFSNTGIEFIIGLGNEYLSKM-KDPSKALTWIKQNVTPFLPATNITCITIGNEILALNDSSLTTNLLPAMQGVHSALITAGLSDQISVTTAHSLSILKSSFPPSAGEFQPDLLDSLTPILEFHRKTDSPFLINAYPFFAYKGNPKEVPLDFVLFQP 224          
BLAST of CX675720 vs. ExPASy Swiss-Prot
Match: E1313_ARATH (Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.821e-32
Identity = 78/196 (39.80%), Postives = 113/196 (57.65%), Query Frame = 3
Query:  222 IGVNIGTDLSDMPSPTQVVALLKAQNIRHIRLYDADRAMLLALANTGIQVTISVPNDQLLGIGQSNATAANWVARNVAAHVPTTNITAIAVGSEVLTVLP--NAGPVLVSALKFIHSALVAANLDDQIKVSTPHSSSIILDSFPPSQAFFNRSWDPVMVPLLKFLQSTGSYLMLNVYPYYDYMQSNEVIPLDYALF 803
            +GV  G    D+P+P++VV L++  NI+++R+YD +  +L A  NT I++ I VPN  L    QS +    W+  +V  + PTT IT I VG+E  T  P  NA   +V A++ + +AL    L  +IKVST  S  I+  SFPPS   FN S+   + P+L+FL    S  M+++YPYY Y  S   + LDY LF
Sbjct:   26 VGVCYGRSADDLPTPSKVVQLIQQHNIKYVRIYDYNSQVLKAFGNTSIELMIGVPNSDLNAFSQSQSNVDTWLKNSVLPYYPTTKITYITVGAE-STDDPHINASSFVVPAMQNVLTALRKVGLSRRIKVSTTLSLGILSRSFPPSAGAFNSSYAYFLRPMLEFLAENKSPFMIDLYPYYAYRDSPNNVSLDYVLF 220          
BLAST of CX675720 vs. ExPASy Swiss-Prot
Match: E1310_ARATH (Glucan endo-1,3-beta-glucosidase 10 OS=Arabidopsis thaliana GN=At5g42100 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.513e-32
Identity = 76/197 (38.58%), Postives = 116/197 (58.88%), Query Frame = 3
Query:  222 IGVNIGTDLSDMPSPTQVVALLKAQNIRHIRLYDADRAMLLALANTGIQVTISVPNDQLLGIGQSNATAANWVARNVAAHVPTTNITAIAVGSEVLTVLPNA-GPVLVSALKFIHSALVAANLDDQIKVSTPHSSSIILDSFPPSQAFFNRSWDPVMVPLLKFLQSTGSYLMLNVYPYYDYMQSNEVIPLDYALFRP 809
            IG+N G   +++P P  V+ LLK+     ++LYDAD   L A A +G ++T+++ N+ L  +      A  WV  NV A++P T I AI VG+EVLT   +A    L  A++ IH ALV   L+ QI V+T HS +I+  S+PPS   F R     + P+L F   TGS +++N YP++ Y ++ + + LD+ LF+P
Sbjct:   27 IGINYGQVANNLPPPKNVIPLLKSVGATKVKLYDADPQALRAFAGSGFELTVALGNEYLAQMSDP-IKAQGWVKENVQAYLPNTKIVAIVVGNEVLTSNQSALTAALFPAMQSIHGALVDCGLNKQIFVTTAHSLAILDVSYPPSATSFRRDLLGSLTPILDFHVKTGSPILINAYPFFAYEENPKHVSLDFVLFQP 222          
BLAST of CX675720 vs. ExPASy Swiss-Prot
Match: EA6_ARATH (Probable glucan endo-1,3-beta-glucosidase A6 OS=Arabidopsis thaliana GN=A6 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.605e-30
Identity = 77/199 (38.69%), Postives = 115/199 (57.79%), Query Frame = 3
Query:  222 IGVNIGTDLSDMPSPTQVVALLKAQNIRHIRLYDADRAMLLALANTGIQVTISVPNDQLLGIGQSNATAANWVARNVAAHVPTTNITAIAVGSEVLTVLPNAGPV---LVSALKFIHSALVAANLDDQIKVSTPHSSSIILDSFPPSQAFFNRS-WDPVMVPLLKFLQSTGSYLMLNVYPYYDYMQSNEVIPLDYALFR 806
            IG+N G   +++PSP Q +  +K+    H++LYDAD   L  L+ T + VTI+VPN Q+  +  +   A  WV  N+  + P T I  + VG+E+L+   N+G V   LV A++ I ++L    + + IKV TP +   +  SFPPS   F      PVM+PLLKFL  T SY  LNV+PY+ + ++     LD+ALF+
Sbjct:   42 IGINYGRRGNNLPSPYQSINFIKSIKAGHVKLYDADPESLTLLSQTNLYVTITVPNHQITALSSNQTIADEWVRTNILPYYPQTQIRFVLVGNEILSY--NSGNVSVNLVPAMRKIVNSLRLHGIHN-IKVGTPLAMDSLRSSFPPSNGTFREEITGPVMLPLLKFLNGTNSYFFLNVHPYFRWSRNPMNTSLDFALFQ 237          
BLAST of CX675720 vs. ExPASy Swiss-Prot
Match: E131_ARATH (Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.738e-30
Identity = 59/99 (59.60%), Postives = 83/99 (83.84%), Query Frame = 3
Query:  516 LPNAGPVLVSALKFIHSALVAANLDDQIKVSTPHSSSIILDSFPPSQAFFNRSWDPVMVPLLKFLQSTGSYLMLNVYPYYDYMQSNEVIPLDYALFRPL 812
            +P++ P+L+ A++ +++ALVA+NL  QIKVSTPH++SI+LD+FPPSQA+FN++W  +MVPLL+FL  TGS LM+N+YPYY YMQ+  V+PLD  LF PL
Sbjct:   33 VPSSAPLLLPAIESLYNALVASNLHTQIKVSTPHAASIMLDTFPPSQAYFNQTWHSIMVPLLQFLSKTGSPLMMNLYPYYVYMQNKGVVPLDNCLFEPL 131          
BLAST of CX675720 vs. ExPASy Swiss-Prot
Match: E13B_PHAVU (Glucan endo-1,3-beta-glucosidase, basic isoform OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.359e-29
Identity = 76/196 (38.78%), Postives = 115/196 (58.67%), Query Frame = 3
Query:  222 IGVNIGTDLSDMPSPTQVVALLKAQNIRHIRLYDADRAMLLALANTGIQVTISVPNDQLLGIGQSNATAANWVARNVAAHVPTTNITAIAVGSEVLTVLPNA--GPVLVSALKFIHSALVAANLDDQIKVSTPHSSSIILDSFPPSQAFFNRSWDPVMVPLLKFLQSTGSYLMLNVYPYYDYMQSNEVIPLDYALF 803
            IGV  G   +++PS  +V+ L ++ NIR +RLYD ++A L AL N+GI++ + VPN  L G+  +  TA  WV RNV    P+  I  IAVG+EV  V  ++     ++ A++ ++ A+ A  L DQIKVST    ++I +S+PPSQ  F       + P++ +L    + L +NVYPY+ Y  +   I L YALF
Sbjct:    2 IGVCYGMMGNNLPSANEVINLYRSNNIRRMRLYDPNQAALQALRNSGIELILGVPNSDLQGLATNADTARQWVQRNVLNFWPSVKIKYIAVGNEVSPVGGSSWYAQYVLPAVQNVYQAVRAQGLHDQIKVSTAIDMTLIGNSYPPSQGSFRGDVRSYLDPIIGYLLYASAPLHVNVYPYFSYSGNPRDISLPYALF 197          
The following BLAST results are available for this feature:
BLAST of CX675720 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
E133_ARATH4.157e-8779.60Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis ... [more]
E132_ARATH6.211e-8376.24Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis ... [more]
E134_ARATH1.489e-6056.78Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis ... [more]
E1312_ARATH3.227e-3941.24Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis... [more]
E1311_ARATH3.126e-3438.58Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis... [more]
E1313_ARATH3.821e-3239.80Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis... [more]
E1310_ARATH8.513e-3238.58Glucan endo-1,3-beta-glucosidase 10 OS=Arabidopsis... [more]
EA6_ARATH1.605e-3038.69Probable glucan endo-1,3-beta-glucosidase A6 OS=Ar... [more]
E131_ARATH2.738e-3059.60Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis ... [more]
E13B_PHAVU1.359e-2938.78Glucan endo-1,3-beta-glucosidase, basic isoform OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_64C10_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-64C10-E20-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675720 ID=CX675720; Name=CX675720; organism=Citrus sinensis; type=EST; length=812bp
CTCAAAAGAAGCTAACTTTTCTCTCTCTCTCTCTCTCAAGTCTTTTTCAT
TGTTGGGGTTTTTGGATTACTCTTGGTTTCTCTTTATTTGAGTCATTTTT
CTTGGAGGTAGACTTGTTTCTGTTGTTAGTTTTTTGAAATATTGAAGTTT
CAATGGCAGTAACGGTTCTTCTTCTTTTTCTCTTGGCTGTCTCTGCTGCT
TCTGCTGATAAAGATGCCTTCATTGGTGTGAACATTGGCACAGACCTCTC
AGACATGCCAAGCCCAACTCAGGTGGTTGCCCTTCTCAAGGCTCAAAATA
TCAGGCATATCAGGCTCTATGATGCCGATCGAGCCATGCTCCTTGCACTT
GCCAACACTGGGATCCAAGTGACCATTTCTGTTCCCAATGATCAGCTCCT
TGGCATTGGTCAGTCCAATGCCACAGCAGCCAACTGGGTTGCTCGGAATG
TTGCTGCTCATGTCCCCACCACCAACATCACTGCCATTGCTGTTGGATCT
GAAGTCCTAACTGTTCTCCCAAATGCTGGTCCAGTCCTAGTCTCTGCCCT
CAAGTTTATCCATTCTGCTCTCGTTGCTGCTAATCTTGATGATCAGATAA
AAGTCTCTACCCCACATTCTTCTTCCATCATCCTTGACTCATTTCCTCCT
TCTCAAGCTTTCTTTAACCGTTCCTGGGATCCAGTCATGGTTCCTTTGCT
GAAATTTCTGCAGTCCACGGGTTCCTATCTTATGCTGAACGTTTATCCAT
ATTATGATTACATGCAATCCAATGAGGTGATTCCATTGGACTATGCACTT
TTCCGTCCTCTC
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