CK939708

Overview
NameCK939708
Unique NameCK939708
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK939708_ssr13 microsatellite CK939708_ssr13:13..27. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK939708 vs. ExPASy Swiss-Prot
Match: NFYC2_ARATH (Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana GN=NFYC2 PE=1 SV=2)

HSP 1 Score: 228.409 bits (581), Expect = 3.809e-59
Identity = 117/136 (86.03%), Postives = 123/136 (90.44%), Query Frame = 2
Query:  251 MFWSNQMQEIEQTADFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGVTKGALP-VVGSPGDMPLYYVPPQHPVGH 655
            MFW+NQMQEIE T DFKNH+LPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLR+WIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGVTKG +P VVGSP   P YY+  Q  + H
Sbjct:   57 MFWANQMQEIEHTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRAWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGVTKGTIPSVVGSP---PYYYLQQQGMMQH 189          
BLAST of CK939708 vs. ExPASy Swiss-Prot
Match: NFYC9_ARATH (Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana GN=NFYC9 PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.087e-53
Identity = 102/144 (70.83%), Postives = 122/144 (84.72%), Query Frame = 2
Query:  254 FWSNQMQEIEQTADFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLG-VTKGALPVVGSPGDMPLYYVPP-QHPVGHTGMIMGKP 679
            FW NQ +EIE+T DFKNHSLPLARIKKIMKADEDVRMISAEAPV+FA+ACEMFILELTLRSW HTEENKRRTLQKNDIAAA++RTD+FDFLVDI+PR++L++E LG + +G +P   + G  P  Y+P    P+G+ GM+MG P
Sbjct:   62 FWENQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRDEVLGSIPRGTVPEAAAAG-YPYGYLPAGTAPIGNPGMVMGNP 204          
BLAST of CK939708 vs. ExPASy Swiss-Prot
Match: NFYC1_ARATH (Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana GN=NFYC1 PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.024e-52
Identity = 99/143 (69.23%), Postives = 117/143 (81.82%), Query Frame = 2
Query:  251 MFWSNQMQEIEQTADFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGVTKGALPVVGSPGDMPLYYVPPQHPVGHTGMIMGKP 679
            +FW+ Q QEIEQ  DFKNH LPLARIKKIMKADEDVRMISAEAP++FAKACE+FILELT+RSW+H EENKRRTLQKNDIAAAI+RTD+FDFLVDI+PRDE+K+E   V  G + V  +   +P YY P   P G  GM++G+P
Sbjct:   46 LFWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEA-AVLGGGMVVAPTASGVPYYYPPMGQPAGPGGMMIGRP 187          
BLAST of CK939708 vs. ExPASy Swiss-Prot
Match: NFYC3_ARATH (Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana GN=NFYC3 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.238e-51
Identity = 100/143 (69.93%), Postives = 117/143 (81.82%), Query Frame = 2
Query:  254 FWSNQMQEIEQTADFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGVTKGALPVVGSPGDMPLYYVPP-QHPVGHTGMIMGKP 679
            FW  Q +EIE+T DFKNHSLPLARIKKIMKADEDVRMISAEAPV+FA+ACEMFILELTLRSW HTEENKRRTLQKNDIAAA++RTD+FDFLVDI+PR++L++E LG   G      +    P  Y+PP   P+G+ GM+MG P
Sbjct:   52 FWETQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRDEVLG---GVGAEAATAAGYPYGYLPPGTAPIGNPGMVMGNP 191          
BLAST of CK939708 vs. ExPASy Swiss-Prot
Match: NFYC4_ARATH (Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana GN=NFYC4 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.111e-50
Identity = 100/154 (64.94%), Postives = 120/154 (77.92%), Query Frame = 2
Query:  251 MFWSNQMQEIEQTADFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEE--GLGVTKGALPVVGSPGDMPLYYVPPQHPVGHTGMIMGKP-VDQAALYS 703
            MFW+ Q QEIEQ  DFKNH LPLARIKKIMKADEDVRMISAEAP++FAKACE+FILELT+RSW+H EENKRRTLQKNDIAAAI+RTD+FDFLVDI+PR+E+KEE        G   V  +   +P YY P   P    GM++G+P +D + +Y+
Sbjct:   59 MFWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREEIKEEEDAASALGGGGMVAPAASGVPYYYPPMGQPAVPGGMMIGRPAMDPSGVYA 212          
BLAST of CK939708 vs. ExPASy Swiss-Prot
Match: NFYC_DICDI (Nuclear transcription factor Y subunit gamma OS=Dictyostelium discoideum GN=nfyc-1 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.402e-37
Identity = 80/166 (48.19%), Postives = 107/166 (64.46%), Query Frame = 2
Query:   80 YPPYQTAPLVASGTPAVAVPSPTQP------PSTFASSPXXXXXXXXXXXXXXXXXXXXXXXXM-FWSNQMQEIEQTADFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELK 556
            YP    +    +GTPA++ PS T P      P+T  S+P                          FWS+Q+++I +T DFK H LPLARIKKIMK+D+DV  IS+EAP++FAKACE+ ILE+T RSW+HTE NKRRTLQ+ DI  ++SR + FDFL+D++PRDE+K
Sbjct:  187 YPSLNDSSSNGNGTPALSSPSSTTPHPTTPHPTTPTSTPNQRFQSNGSSSFQNQLQNHLENKLSSFWSSQLRDIHKTEDFKTHELPLARIKKIMKSDKDVNKISSEAPILFAKACEILILEMTHRSWVHTEMNKRRTLQRTDIINSLSRCETFDFLIDMLPRDEIK 352          
BLAST of CK939708 vs. ExPASy Swiss-Prot
Match: NFYC6_ARATH (Nuclear transcription factor Y subunit C-6 OS=Arabidopsis thaliana GN=NFYC6 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.318e-35
Identity = 77/161 (47.83%), Postives = 106/161 (65.84%), Query Frame = 2
Query:  254 FWSNQMQEIEQTADFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGVTKGALPVVGSP--GDMPLYYVPPQHPVGHTGMIMGKPVDQAALYSGQQPRPPVA 730
            +W  QM+ +   +DFKN  LPLARIKKIMKAD DV M+SAEAP+IFAKACEMFI++LT+RSW+  EENKR TLQK+DI+ A++ +  +DFL+D++P+D    E +         +  P  G +P YY PP       G++MG P+  + +Y+  Q  P  A
Sbjct:   39 YWIEQMETV---SDFKNRQLPLARIKKIMKADPDVHMVSAEAPIIFAKACEMFIVDLTMRSWLKAEENKRHTLQKSDISNAVASSFTYDFLLDVVPKD----ESIATADPGFVAMPHPDGGGVPQYYYPP-------GVVMGTPMVGSGMYAPSQAWPAAA 185          
BLAST of CK939708 vs. ExPASy Swiss-Prot
Match: NFYC_RAT (Nuclear transcription factor Y subunit gamma OS=Rattus norvegicus GN=Nfyc PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.457e-34
Identity = 72/103 (69.90%), Postives = 85/103 (82.52%), Query Frame = 2
Query:  254 FWSNQMQEIEQTA--DFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELK 556
            FW   M+EI      DF+   LPLARIKKIMK DEDV+MISAEAPV+FAKA ++FI ELTLR+WIHTE+NKRRTLQ+NDIA AI++ D FDFL+DI+PRDELK
Sbjct:   22 FWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELK 124          
BLAST of CK939708 vs. ExPASy Swiss-Prot
Match: NFYC_PONAB (Nuclear transcription factor Y subunit gamma OS=Pongo abelii GN=NFYC PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.457e-34
Identity = 72/103 (69.90%), Postives = 85/103 (82.52%), Query Frame = 2
Query:  254 FWSNQMQEIEQTA--DFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELK 556
            FW   M+EI      DF+   LPLARIKKIMK DEDV+MISAEAPV+FAKA ++FI ELTLR+WIHTE+NKRRTLQ+NDIA AI++ D FDFL+DI+PRDELK
Sbjct:   22 FWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELK 124          
BLAST of CK939708 vs. ExPASy Swiss-Prot
Match: NFYC_MOUSE (Nuclear transcription factor Y subunit gamma OS=Mus musculus GN=Nfyc PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.457e-34
Identity = 72/103 (69.90%), Postives = 85/103 (82.52%), Query Frame = 2
Query:  254 FWSNQMQEIEQTA--DFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELK 556
            FW   M+EI      DF+   LPLARIKKIMK DEDV+MISAEAPV+FAKA ++FI ELTLR+WIHTE+NKRRTLQ+NDIA AI++ D FDFL+DI+PRDELK
Sbjct:   22 FWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELK 124          
The following BLAST results are available for this feature:
BLAST of CK939708 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
NFYC2_ARATH3.809e-5986.03Nuclear transcription factor Y subunit C-2 OS=Arab... [more]
NFYC9_ARATH9.087e-5370.83Nuclear transcription factor Y subunit C-9 OS=Arab... [more]
NFYC1_ARATH2.024e-5269.23Nuclear transcription factor Y subunit C-1 OS=Arab... [more]
NFYC3_ARATH2.238e-5169.93Nuclear transcription factor Y subunit C-3 OS=Arab... [more]
NFYC4_ARATH1.111e-5064.94Nuclear transcription factor Y subunit C-4 OS=Arab... [more]
NFYC_DICDI2.402e-3748.19Nuclear transcription factor Y subunit gamma OS=Di... [more]
NFYC6_ARATH1.318e-3547.83Nuclear transcription factor Y subunit C-6 OS=Arab... [more]
NFYC_RAT1.457e-3469.90Nuclear transcription factor Y subunit gamma OS=Ra... [more]
NFYC_PONAB1.457e-3469.90Nuclear transcription factor Y subunit gamma OS=Po... [more]
NFYC_MOUSE1.457e-3469.90Nuclear transcription factor Y subunit gamma OS=Mu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004746_G11 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIF_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939708 ID=CK939708; Name=CK939708; organism=Citrus sinensis; type=EST; length=831bp
GGGAGATCAAACACAACAACAACAACAGCAACAGCAGCAGCCTGTGATGG
GGGTTGTAGCTGGTGCTGGTCAGATGTCATATCCTCCCTACCAAACGGCT
CCTTTGGTGGCTTCTGGTACTCCTGCTGTGGCTGTCCCCTCCCCAACCCA
GCCTCCATCTACTTTCGCCAGTTCTCCGCACCAGCTTGCCTACCAACAAG
CCCAGCACTTTCACCACCAACAGCAGCAGCAACAACAGCAGCAGCTTCAG
ATGTTCTGGTCCAATCAAATGCAAGAAATTGAGCAAACGGCCGACTTCAA
GAATCACAGCCTCCCACTTGCTAGGATCAAGAAAATTATGAAAGCTGATG
AAGATGTGAGAATGATTTCAGCAGAGGCCCCTGTCATATTTGCCAAGGCT
TGTGAGATGTTTATTTTGGAACTAACTCTGCGGTCTTGGATCCACACAGA
AGAGAATAAAAGGAGAACACTGCAAAAGAATGATATAGCGGCTGCCATTT
CAAGGACTGATGTTTTTGATTTCTTGGTGGATATTATTCCTAGAGATGAG
TTGAAAGAGGAGGGACTTGGGGTCACCAAGGGCGCTCTTCCAGTGGTAGG
TTCACCTGGTGATATGCCCTTATACTATGTCCCGCCACAGCACCCCGTGG
GGCATACAGGGATGATCATGGGAAAGCCAGTCGATCAAGCAGCACTTTAT
TCTGGCCAGCAGCCTCGACCTCCTGTGGCTTTTATGCCATGGCCTCAGAG
TCAGAGTCAAGCACAACAGCAGCAGCAACCTCAACAACAGCAAAATGACC
CTTGAATGACTTATCGAAGCTTTTGAACATT
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