CK939702
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939702 vs. ExPASy Swiss-Prot
Match: PUS4_ARATH (RNA pseudourine synthase 4, mitochondrial OS=Arabidopsis thaliana GN=At3g19440 PE=2 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 3.230e-35 Identity = 80/152 (52.63%), Postives = 105/152 (69.08%), Query Frame = 3 Query: 324 ERRGKWFTLPPFTSTIDGSALGRQL-----ACASKSPISETTALKWVLQCCPGLPRNLVQKPFRLRQVRRESPSLDSSANEGHEQEIKLKRVAAKDSLKLGDRIFLPISI-----QESPSRKEKCPCTEEEVGFIXXLELYKDSAIIVINKP 749 + RGKW TLPPF+ TIDG+A+G+ L + S + S+TTAL+W+L+C P LPR LVQK FRLRQVRRE + S + Q +LKRVAAK+SL +GDRI+LP+S+ Q P++KE C++EE F+ L LYKD AIIV+NKP Sbjct: 50 DSRGKWLTLPPFSPTIDGTAVGKDLLSDGDSVKSSTDNSKTTALRWILRCRPDLPRTLVQKLFRLRQVRRE---MSMSVDGDELQRSQLKRVAAKESLNVGDRIYLPLSVDNDTPQTPPAKKESFQCSDEERKFVCSLVLYKDPAIIVLNKP 198
BLAST of CK939702 vs. ExPASy Swiss-Prot
Match: PUS4_ORYSJ (RNA pseudourine synthase 4, mitochondrial OS=Oryza sativa subsp. japonica GN=Os09g0103500 PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.836e-23 Identity = 61/146 (41.78%), Postives = 91/146 (62.33%), Query Frame = 3 Query: 330 RGK--WFTLPPFTSTIDGSALGRQLACASKSP---ISETTALKWVLQCCPGLPRNLVQKPFRLRQVRRESPSLDSSANEGHEQEIKLKRVAAKDSLKLGDRIFLPISIQESP-SRKEKCPCTEEEVGFIXXLELYKDSAIIVINKP 749 RGK W LPPF + +D +A R ++ TA+KWV +CCP LP +LVQK FRLR+V++ + + S+ + ++ +L+RV+AKD L GD +FLP++++ES + K K E+ F+ LE+YKD AIIV+NKP Sbjct: 47 RGKSPWLQLPPF-APLDAAAAARAISRGGGEGGDGEQGATAIKWVRRCCPDLPTSLVQKLFRLRKVKKNVVTAEISSADASAEQHRLRRVSAKDQLMPGDILFLPVNLKESSVAEKTKKFDNRNEINFLRGLEIYKDEAIIVVNKP 191
BLAST of CK939702 vs. ExPASy Swiss-Prot
Match: PUS3_ORYSJ (RNA pseudourine synthase 3, mitochondrial OS=Oryza sativa subsp. japonica GN=Os08g0520100 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.247e-11 Identity = 46/142 (32.39%), Postives = 71/142 (50.00%), Query Frame = 3 Query: 345 TLPPFTSTIDGSALGRQLACASKSPISETTALKWVLQCCPGLPRNLVQKPFRLRQVRRESPSLDSSANEGHEQEIKLKRVAAKDSLKLGDRIFLPISIQESPSRK--EKCPCT-----EEEVGFIXXLELYKDSAIIVINKP 749 +LPPF DG L + A A + TA+ WV +P+ +VQ F R V E + S Q+ LK++ D ++ G RI LP+S+ E +K E P ++E+ ++ L ++KDSAI+V+NKP Sbjct: 55 SLPPFPGGGDGDPLPGRKAAAPR----RVTAVSWVKHYLADVPQEVVQAHFNKRLVYSECSDHEVSVETIKSQKHHLKKIKHNDVMEPGMRIHLPVSVAEGEIKKRYETIPTATLHPNKDEIEYLRRLVIHKDSAILVLNKP 192 The following BLAST results are available for this feature:
BLAST of CK939702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 3
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CK939702 ID=CK939702; Name=CK939702; organism=Citrus sinensis; type=EST; length=749bpback to top |