CK939702

Overview
NameCK939702
Unique NameCK939702
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939702 vs. ExPASy Swiss-Prot
Match: PUS4_ARATH (RNA pseudourine synthase 4, mitochondrial OS=Arabidopsis thaliana GN=At3g19440 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.230e-35
Identity = 80/152 (52.63%), Postives = 105/152 (69.08%), Query Frame = 3
Query:  324 ERRGKWFTLPPFTSTIDGSALGRQL-----ACASKSPISETTALKWVLQCCPGLPRNLVQKPFRLRQVRRESPSLDSSANEGHEQEIKLKRVAAKDSLKLGDRIFLPISI-----QESPSRKEKCPCTEEEVGFIXXLELYKDSAIIVINKP 749
            + RGKW TLPPF+ TIDG+A+G+ L     +  S +  S+TTAL+W+L+C P LPR LVQK FRLRQVRRE   +  S +    Q  +LKRVAAK+SL +GDRI+LP+S+     Q  P++KE   C++EE  F+  L LYKD AIIV+NKP
Sbjct:   50 DSRGKWLTLPPFSPTIDGTAVGKDLLSDGDSVKSSTDNSKTTALRWILRCRPDLPRTLVQKLFRLRQVRRE---MSMSVDGDELQRSQLKRVAAKESLNVGDRIYLPLSVDNDTPQTPPAKKESFQCSDEERKFVCSLVLYKDPAIIVLNKP 198          
BLAST of CK939702 vs. ExPASy Swiss-Prot
Match: PUS4_ORYSJ (RNA pseudourine synthase 4, mitochondrial OS=Oryza sativa subsp. japonica GN=Os09g0103500 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.836e-23
Identity = 61/146 (41.78%), Postives = 91/146 (62.33%), Query Frame = 3
Query:  330 RGK--WFTLPPFTSTIDGSALGRQLACASKSP---ISETTALKWVLQCCPGLPRNLVQKPFRLRQVRRESPSLDSSANEGHEQEIKLKRVAAKDSLKLGDRIFLPISIQESP-SRKEKCPCTEEEVGFIXXLELYKDSAIIVINKP 749
            RGK  W  LPPF + +D +A  R ++             TA+KWV +CCP LP +LVQK FRLR+V++   + + S+ +   ++ +L+RV+AKD L  GD +FLP++++ES  + K K      E+ F+  LE+YKD AIIV+NKP
Sbjct:   47 RGKSPWLQLPPF-APLDAAAAARAISRGGGEGGDGEQGATAIKWVRRCCPDLPTSLVQKLFRLRKVKKNVVTAEISSADASAEQHRLRRVSAKDQLMPGDILFLPVNLKESSVAEKTKKFDNRNEINFLRGLEIYKDEAIIVVNKP 191          
BLAST of CK939702 vs. ExPASy Swiss-Prot
Match: PUS3_ORYSJ (RNA pseudourine synthase 3, mitochondrial OS=Oryza sativa subsp. japonica GN=Os08g0520100 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.247e-11
Identity = 46/142 (32.39%), Postives = 71/142 (50.00%), Query Frame = 3
Query:  345 TLPPFTSTIDGSALGRQLACASKSPISETTALKWVLQCCPGLPRNLVQKPFRLRQVRRESPSLDSSANEGHEQEIKLKRVAAKDSLKLGDRIFLPISIQESPSRK--EKCPCT-----EEEVGFIXXLELYKDSAIIVINKP 749
            +LPPF    DG  L  + A A +      TA+ WV      +P+ +VQ  F  R V  E    + S      Q+  LK++   D ++ G RI LP+S+ E   +K  E  P       ++E+ ++  L ++KDSAI+V+NKP
Sbjct:   55 SLPPFPGGGDGDPLPGRKAAAPR----RVTAVSWVKHYLADVPQEVVQAHFNKRLVYSECSDHEVSVETIKSQKHHLKKIKHNDVMEPGMRIHLPVSVAEGEIKKRYETIPTATLHPNKDEIEYLRRLVIHKDSAILVLNKP 192          
The following BLAST results are available for this feature:
BLAST of CK939702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PUS4_ARATH3.230e-3552.63RNA pseudourine synthase 4, mitochondrial OS=Arabi... [more]
PUS4_ORYSJ2.836e-2341.78RNA pseudourine synthase 4, mitochondrial OS=Oryza... [more]
PUS3_ORYSJ4.247e-1132.39RNA pseudourine synthase 3, mitochondrial OS=Oryza... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004746_G05 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIF_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939702 ID=CK939702; Name=CK939702; organism=Citrus sinensis; type=EST; length=749bp
GGGGGAAACCCATAAGTTTTTGCCGGGTACCAAAACCCCGCTGATCCCTC
CCGCACTTGCCTGATGCAGTGGGGCCTACTAATACTATCACACACTAAAT
GGTCAAAATTCGAAACCAAAATCTGACGGCGATGCTCTTCTGCCGCAAGC
TTTCCCTCCTCCGATCGCCACCGTACTCCGCCCTCCACGGCGGCGTTAGA
CAGGCTATACTCTCCCTATCGTCATCCTTCCACCTTCACCAATCATGTTA
CGCAACTAAAACCTTAACACGCAACAATAAAACACACATTAATAATTGTG
ATGATAATAATAATGGTGATGATGAAAGGAGAGGCAAGTGGTTCACTTTA
CCTCCGTTTACTTCCACAATCGACGGCTCAGCCTTGGGAAGACAGCTCGC
TTGCGCCTCGAAATCCCCCATTTCCGAAACGACAGCGCTTAAGTGGGTTC
TTCAGTGCTGTCCTGGCTTGCCCAGAAATCTTGTTCAGAAGCCCTTTCGC
TTGAGACAGGTTCGAAGAGAATCCCCTAGTTTGGATAGCTCTGCTAATGA
AGGGCACGAACAGGAAATTAAACTAAAAAGAGTGGCAGCTAAGGATTCCT
TGAAGTTGGGAGATCGAATCTTTCTCCCGATTAGCATTCAGGAGTCACCT
TCTAGGAAAGAAAAGTGCCCTTGCACTGAGGAAGAAGTGGGGTTTATTNN
NNGCCTAGAGTTGTATAAGGATTCAGCCATTATCGTTATCAATAAACCT
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