CK939695

Overview
NameCK939695
Unique NameCK939695
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length833
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2211 contig Csv1_Contig2211:1..833. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of CK939695 vs. ExPASy Swiss-Prot
Match: PSAI_CITSI (Photosystem I reaction center subunit VIII OS=Citrus sinensis GN=psaI PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.250e-13
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1 
Query:  148 MTILNSFPSIFVPLVGLVFPAMAMASLFLYLEKNKIL 258
            MTILNSFPSIFVPLVGLVFPAMAMASLFLYLEKNKIL
Sbjct:    1 MTILNSFPSIFVPLVGLVFPAMAMASLFLYLEKNKIL 37
[Close]
BLAST of CK939695 vs. ExPASy Swiss-Prot
Match: YCF4_CITSI (Photosystem I assembly protein ycf4 OS=Citrus sinensis GN=ycf4 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.976e-11
Identity = 33/50 (66.00%), Postives = 33/50 (66.00%), Query Frame = 3 
Query:  684 MSWRSEYIWVEFIAGSRKPGNFFWAXXXXXXXXXXXXXXXXXYLDRNLLS 833
            MSWRSEYIWVEFIAGSRKPGNFFWA                 YLDRNLLS
Sbjct:    1 MSWRSEYIWVEFIAGSRKPGNFFWAFILFLGSLGFLVVGISSYLDRNLLS 50
The following BLAST results are available for this feature:
BLAST of CK939695 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PSAI_CITSI9.250e-13100.00Photosystem I reaction center subunit VIII OS=Citr... [more]
YCF4_CITSI2.976e-1166.00Photosystem I assembly protein ycf4 OS=Citrus sine... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004746_H05 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIF_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939695 ID=CK939695; Name=CK939695; organism=Citrus sinensis; type=EST; length=833bp
GGGACTTATATACAATTATATAAGTATACTTAATATACATTTATATACGA
ATTAGAATATGATAATAATTAGAATATGAATTCTAATTATTATAGGATAT
CCTTATACCAATAACAGGTACAAATATTAAATCGAGGTACCCTTTCTATG
ACAATTCTCAACAGCTTTCCCTCTATTTTTGTGCCTTTAGTGGGCCTAGT
ATTTCCGGCAATGGCAATGGCTTCGTTATTTCTTTATCTTGAAAAAAATA
AGATTTTGTAAATCCGATCGGATCAAGGTCAAATCTCGTCTAGTTTTTTT
CAAGACTTAGCGATGACGGATATCCATTTAGTAGAATAGTGTATAAGACT
AAGAGGCGGCTTTCCCCGAACATAAACGAAGAGCTCTTATGCATGTGTAA
ACATGATATATAGGTACATAAATTCTATCTATTTTGAACAAGAGGCTGTG
ATCCGAACTCATGTCTGCAATGAAAGTCAATGGTACCAATCTACAGGGAC
TTATATGAAGGGGATACTCTTATTTTATTCTACCTCACCAATTCGATGAA
TTATTGCTAAGAGCTCACGTCCAAATAGTACTAGTTGATGAGAGTTACTT
CGGAAATACAAAAAGTAAACTAAAATGGATTTGGTTTTGGTTATTTCCCC
AATTCCAATAAAATGCAACTGGAGCTAGTATGTATGAGTTGGCGATCAGA
ATATATATGGGTAGAATTTATAGCGGGCTCTCGCAAACCAGGCAATTTCT
TCTGGGCCTTTATCCTTTTTTTAGGCTCATTAGGATTCTTAGTGGTTGGA
ATTTCTAGTTATCTTGATAGGAATTTGCTATCT
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