CK939685

Overview
NameCK939685
Unique NameCK939685
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939685 vs. ExPASy Swiss-Prot
Match: MEM11_ARATH (Membrin-11 OS=Arabidopsis thaliana GN=MEMB11 PE=1 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 1.305e-87
Identity = 160/224 (71.43%), Postives = 194/224 (86.61%), Query Frame = 2
Query:   65 VEGGGTLSEIYQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIRSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELLGRANGESSHILRIFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILYFFWRWTR 736
            VEGGG+LS++Y SAK++LL+ARDG+E+LER ESS+     DSP+L+ +VK+DI+++RSLC  MD LWRSI  KSQRDLW+RK EQV EEAE L  SL+KY  RNQR++ EA+ERA+LLGRA+GE +HIL+IFDEEAQAM SV+NS RML+ESF++G AIL+KYAEQR+ LK AQRKALDVLNTVGLSNSVLRLIERRNRVDTWIKY GM++T+VILY F RWTR
Sbjct:    6 VEGGGSLSDVYSSAKRILLKARDGIERLERFESSSM----DSPDLASSVKRDITEVRSLCSNMDTLWRSIPVKSQRDLWRRKTEQVGEEAEYLNLSLEKYMSRNQRKMLEAKERADLLGRASGEGAHILQIFDEEAQAMSSVKNSKRMLEESFSSGVAILSKYAEQRDRLKSAQRKALDVLNTVGLSNSVLRLIERRNRVDTWIKYAGMIATLVILYLFIRWTR 225          
BLAST of CK939685 vs. ExPASy Swiss-Prot
Match: MEM12_ARATH (Membrin-12 OS=Arabidopsis thaliana GN=MEMB12 PE=2 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 5.311e-81
Identity = 153/228 (67.11%), Postives = 186/228 (81.58%), Query Frame = 2
Query:   53 MAMAVEGGGTLSEIYQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIRSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELLGRANGESSHILRIFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILYFFWRWTR 736
            MA    GG  LSE+Y SAK++LLRAR+G+EKLER +S       D  +L+ +VK+DI++++SLC  MD LWRSI  KSQRDLW+RK EQV EEAE L +SL+KY  RNQR++ EA+ERA+LLGR +GE +HIL+IFDEEAQ M SV+NS RML++SF +G AIL+KYAEQR+ LK AQRKALDVLNTVGLSNSVLRLIERRNRVDTWIKY GM++T+VILY F RWTR
Sbjct:    1 MASGTVGG--LSEVYSSAKRILLRARNGIEKLERFDS-------DPTDLASSVKRDITEVQSLCSNMDGLWRSIPVKSQRDLWRRKSEQVGEEAEYLNQSLEKYMWRNQRKMLEAKERADLLGRGSGEGAHILQIFDEEAQGMNSVKNSKRMLEDSFQSGVAILSKYAEQRDRLKSAQRKALDVLNTVGLSNSVLRLIERRNRVDTWIKYAGMIATLVILYLFIRWTR 219          
BLAST of CK939685 vs. ExPASy Swiss-Prot
Match: GOSR2_CAEBR (Probable Golgi SNAP receptor complex member 2 OS=Caenorhabditis briggsae GN=gosr-2.1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.282e-14
Identity = 58/214 (27.10%), Postives = 102/214 (47.66%), Query Frame = 2
Query:   95 YQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIRSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELLGRANGESSHILRIFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILYFFWRWTR 736
            YQS   LL + +  + +LE  ++       D+  +  ++  DIS ++     +D  + S    ++R   + +V+Q+  + + +  ++     R  +R   A ER ELL      +   L I D E Q    + +S   L E  + G+A+L     Q   L+   RK  D+   +GLSNS L++I+RR R D WI  +G +   + +Y F+R+ R
Sbjct:    5 YQSTNFLLQKVQHDLGRLEGTQNEQ-----DAQVVVQSIYGDISTLKDNLQALDN-YVSREQPARRQAARMRVDQLRMDVQRVDMAVSAVHTRMTQRWRSASEREELLSARYRPNDTALSIGDHELQLNDRLHSSHNRLDELISQGSAVLDNLKSQHFSLRGVSRKMHDIGQALGLSNSTLQVIDRRVRED-WIFVIGCIVCCIFMYAFYRFWR 211          
BLAST of CK939685 vs. ExPASy Swiss-Prot
Match: GOSR2_MOUSE (Golgi SNAP receptor complex member 2 OS=Mus musculus GN=Gosr2 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.056e-12
Identity = 57/212 (26.89%), Postives = 100/212 (47.17%), Query Frame = 2
Query:   83 LSEIYQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIRSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELLGRANGESSHILRI-FDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILY 715
            +  +YQ   K +   +  + +LER +  +        E+  ++++  S +  L      +  S    ++R   K +V+Q+  + + L+ +L  +  R Q R  + R+R ELL R    +     I  DE  Q   S+ N    + +    G +IL     QR  LK  Q+K LD+ N +GLSN+V+RLIE+R   D +    GM+ T  +++
Sbjct:    1 MEPLYQQTNKQVQEIQSHMGRLERADKQSVH--LVENEIQASIEQIFSHLERL-----EILSSKEPLNRRQNAKLRVDQLKYDVQHLQTALRNFQHRRQVREQQERQRDELLSRTFTTNDSDTTIPMDESLQFNSSLHNIHHGMDDLIGGGHSILEGLRAQRLTLKGTQKKILDIANMLGLSNTVMRLIEKRAFQDKYFMIGGMLLTCAVMF 205          
BLAST of CK939685 vs. ExPASy Swiss-Prot
Match: GOSR2_RAT (Golgi SNAP receptor complex member 2 OS=Rattus norvegicus GN=Gosr2 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.012e-12
Identity = 52/170 (30.59%), Postives = 86/170 (50.59%), Query Frame = 2
Query:  209 VKKDISQIRSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELLGRANGESSHILRI-FDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILY 715
            ++  I QI S    ++ L  S    ++R   K +V+Q+  + + L+ +L  +  R Q +  + R+R ELL R    +     I  DE  Q   S++N    + +    G +IL     QR  LK  Q+K LD+ N +GLSN+V+RLIE+R   D +    GM+ T  +++
Sbjct:   37 IQASIDQIFSHLERLEIL-SSKEPPNRRQNAKLRVDQLKYDVQHLQTALRNFQHRRQAKEQQERQRDELLSRTFTTNDSDTTIPMDESLQFNSSLQNIHHGMDDLIGGGHSILEGLRAQRLTLKGTQKKILDIANMLGLSNTVMRLIEKRAFQDKYFMIGGMLLTCAVMF 205          
BLAST of CK939685 vs. ExPASy Swiss-Prot
Match: GOSR2_DROME (Probable Golgi SNAP receptor complex member 2 OS=Drosophila melanogaster GN=membrin PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.012e-12
Identity = 59/197 (29.95%), Postives = 97/197 (49.24%), Query Frame = 2
Query:  137 VEKLER-LESSTSTGGYDSPELSFAVKKDISQIRSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELLGR---ANGESSHILRI-FDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVIL 712
            V+ +ER  +  +     +S ++   ++  I+Q  + C  +D L   +   SQR   K +V+Q+  +   L+ SL     R QRR+ E  ER +LL     AN       R+  D E Q    + N+ R + +  A+G+ IL     QR  L  A ++   + +T+GLSN  ++LIERR   D  I   G+V T++I+
Sbjct:   12 VKDIERDFQRLSQLSAQESLDVENGIQLKITQANANCDRLDVLLYKVPP-SQRQSSKLRVDQLKYDLRHLQTSLQTARERRQRRMQEISEREQLLNHRFTANSAQPEETRLQLDYELQHHTQLGNAHRGVDDMIASGSGILESLISQRMTLGGAHKRIQAIGSTLGLSNHTMKLIERRLVEDRRIFIGGVVVTLLII 207          
BLAST of CK939685 vs. ExPASy Swiss-Prot
Match: GOSR2_CAEEL (Probable Golgi SNAP receptor complex member 2 OS=Caenorhabditis elegans GN=gosr-2.1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.844e-12
Identity = 52/218 (23.85%), Postives = 102/218 (46.79%), Query Frame = 2
Query:   83 LSEIYQSAKKLLLRARDGVEKLERLESSTSTGGYDSPELSFAVKKDISQIRSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELLGRANGESSHILRIFDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILYFFWRWTR 736
            +  +YQS   LL + +  + +LE  ++       D+  +   +  D+  ++  C  +D  + S    ++R   + +V+Q+  +   +  ++     R  +R   A ER ELL      +   L I D E      +++S   L +  + G+A+L     Q  +L+   RK  ++   +GLSNS L++I+RR R D  +  +G +   + +Y F+R+ R
Sbjct:    1 MEALYQSTNFLLQKVQHDLGRLEGTQNEQ-----DAQVVVQCIYGDVITLKENCQTLDN-YVSREPPARRQAARMRVDQLRADVHRVDMAVSAVHTRMTQRWRAATERDELLRTRYRPNDTALSIGDHELLLNDRLQSSHTHLDDLISQGSAVLENLKSQHLNLRGVGRKMHEIGQALGLSNSTLQVIDRRVREDWILFVIGCIVCCIFMYAFYRFWR 212          
BLAST of CK939685 vs. ExPASy Swiss-Prot
Match: GOSR2_HUMAN (Golgi SNAP receptor complex member 2 OS=Homo sapiens GN=GOSR2 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.436e-11
Identity = 51/170 (30.00%), Postives = 84/170 (49.41%), Query Frame = 2
Query:  209 VKKDISQIRSLCVEMDRLWRSIAAKSQRDLWKRKVEQVAEEAESLKESLDKYFLRNQRRINEARERAELLGRANGESSHILRI-FDEEAQAMQSVRNSSRMLQESFATGTAILAKYAEQREHLKKAQRKALDVLNTVGLSNSVLRLIERRNRVDTWIKYVGMVSTVVILY 715
            ++  I QI S    ++ L  S    ++R   + +V+Q+  + + L+ +L  +  R   R  + R+R ELL R    +     I  DE  Q   S++     + +    G  IL     QR  LK  Q+K LD+ N +GLSN+V+RLIE+R   D +    GM+ T V+++
Sbjct:   37 IQASIDQIFSRLERLEIL-SSKEPPNKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPMDESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMRLIEKRAFQDKYFMIGGMLLTCVVMF 205          
The following BLAST results are available for this feature:
BLAST of CK939685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
MEM11_ARATH1.305e-8771.43Membrin-11 OS=Arabidopsis thaliana GN=MEMB11 PE=1 ... [more]
MEM12_ARATH5.311e-8167.11Membrin-12 OS=Arabidopsis thaliana GN=MEMB12 PE=2 ... [more]
GOSR2_CAEBR3.282e-1427.10Probable Golgi SNAP receptor complex member 2 OS=C... [more]
GOSR2_MOUSE1.056e-1226.89Golgi SNAP receptor complex member 2 OS=Mus muscul... [more]
GOSR2_RAT4.012e-1230.59Golgi SNAP receptor complex member 2 OS=Rattus nor... [more]
GOSR2_DROME4.012e-1229.95Probable Golgi SNAP receptor complex member 2 OS=D... [more]
GOSR2_CAEEL6.844e-1223.85Probable Golgi SNAP receptor complex member 2 OS=C... [more]
GOSR2_HUMAN4.436e-1130.00Golgi SNAP receptor complex member 2 OS=Homo sapie... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004747_A05 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIIF_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939685 ID=CK939685; Name=CK939685; organism=Citrus sinensis; type=EST; length=768bp
GGGGGTCTGTTCATTCAGTCTGAAAAAATCAAAAGAAGTAAAAGGATTGG
CGATGGCGATGGCGGTTGAAGGAGGAGGGACATTATCGGAGATATATCAA
AGTGCGAAGAAGTTGCTGTTGAGAGCGAGAGACGGAGTTGAGAAACTGGA
GAGACTGGAGAGCTCGACGTCGACTGGGGGATACGATTCGCCGGAGCTCT
CCTTCGCCGTCAAGAAAGATATTTCTCAGATCCGGTCACTCTGCGTCGAG
ATGGACCGCCTATGGCGCTCCATCGCCGCCAAGTCTCAGCGCGATCTCTG
GAAGAGAAAAGTTGAACAAGTAGCAGAAGAGGCTGAATCATTGAAAGAGA
GCCTCGATAAGTACTTTTTAAGAAATCAGAGACGGATAAATGAAGCTAGA
GAGAGGGCGGAATTGCTTGGAAGAGCTAATGGAGAGTCGTCTCATATTTT
GAGAATTTTTGACGAGGAGGCGCAAGCAATGCAGTCAGTACGCAATTCAT
CGAGGATGTTGCAAGAATCGTTTGCAACTGGGACAGCCATTCTTGCCAAA
TATGCAGAACAAAGGGAGCATCTAAAGAAAGCACAAAGGAAAGCTCTGGA
TGTTCTCAACACAGTGGGTCTGTCCAATTCAGTATTGAGGCTCATTGAGA
GGAGGAACCGTGTCGATACATGGATCAAATACGTAGGAATGGTTTCTACA
GTGGTCATCTTATATTTCTTCTGGAGGTGGACTAGGTGATCCGATCTTCA
TACTTAGCCACGCATAGA
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