CX675716

Overview
NameCX675716
Unique NameCX675716
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length415
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig371 contig Csv1_Contig371:543..957. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675716 vs. ExPASy Swiss-Prot
Match: SYK_ORYSJ (Lysyl-tRNA synthetase OS=Oryza sativa subsp. japonica GN=Os03g0586800 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.463e-14
Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 3
Query:    3 LEYGLPPTAGWGLGIDRLAMLLTDSQNIKEVLLFPAM 113
            LEYGLPPT GWGLGIDRL MLLTDSQNIKEVLLFPAM
Sbjct:  562 LEYGLPPTGGWGLGIDRLTMLLTDSQNIKEVLLFPAM 598          
BLAST of CX675716 vs. ExPASy Swiss-Prot
Match: SYK_HUMAN (Lysyl-tRNA synthetase OS=Homo sapiens GN=KARS PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 4.696e-13
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 3
Query:    3 LEYGLPPTAGWGLGIDRLAMLLTDSQNIKEVLLFPAM 113
            LEYGLPPTAGWG+GIDR+AM LTDS NIKEVLLFPAM
Sbjct:  537 LEYGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFPAM 573          
BLAST of CX675716 vs. ExPASy Swiss-Prot
Match: SYK_MOUSE (Lysyl-tRNA synthetase OS=Mus musculus GN=Kars PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.134e-13
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 3
Query:    3 LEYGLPPTAGWGLGIDRLAMLLTDSQNIKEVLLFPAM 113
            LEYGLPPTAGWG+GIDRL M LTDS NIKEVLLFPAM
Sbjct:  535 LEYGLPPTAGWGMGIDRLTMFLTDSNNIKEVLLFPAM 571          
BLAST of CX675716 vs. ExPASy Swiss-Prot
Match: SYK_CRIGR (Lysyl-tRNA synthetase OS=Cricetulus griseus GN=KARS PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.366e-12
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 3
Query:    3 LEYGLPPTAGWGLGIDRLAMLLTDSQNIKEVLLFPAM 113
            LEYGLPPTAGWG+GIDR+ M LTDS NIKEVLLFPAM
Sbjct:  537 LEYGLPPTAGWGMGIDRVTMFLTDSNNIKEVLLFPAM 573          
BLAST of CX675716 vs. ExPASy Swiss-Prot
Match: SYK_CAEEL (Lysyl-tRNA synthetase OS=Caenorhabditis elegans GN=krs-1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.785e-12
Identity = 31/37 (83.78%), Postives = 35/37 (94.59%), Query Frame = 3
Query:    3 LEYGLPPTAGWGLGIDRLAMLLTDSQNIKEVLLFPAM 113
            LEYGLPPT GWG+GIDRL+M+LTD+ NIKEVLLFPAM
Sbjct:  517 LEYGLPPTGGWGMGIDRLSMILTDNNNIKEVLLFPAM 553          
BLAST of CX675716 vs. ExPASy Swiss-Prot
Match: SYK_SOLLC (Lysyl-tRNA synthetase OS=Solanum lycopersicum GN=LYSRS PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.157e-11
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 3
Query:    3 LEYGLPPTAGWGLGIDRLAMLLTDSQNIKEVLLFPAM 113
            LEYGLPPT G G+GIDRL MLLTDSQN+KEV+LFPAM
Sbjct:  549 LEYGLPPTGGLGMGIDRLTMLLTDSQNVKEVILFPAM 585          
BLAST of CX675716 vs. ExPASy Swiss-Prot
Match: SYK_ARATH (Lysyl-tRNA synthetase OS=Arabidopsis thaliana GN=At3g11710 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.157e-11
Identity = 32/37 (86.49%), Postives = 33/37 (89.19%), Query Frame = 3
Query:    3 LEYGLPPTAGWGLGIDRLAMLLTDSQNIKEVLLFPAM 113
            LEYGL PT GWGLGIDRL+MLLTDS NIKEVL FPAM
Sbjct:  571 LEYGLAPTGGWGLGIDRLSMLLTDSLNIKEVLFFPAM 607          
BLAST of CX675716 vs. ExPASy Swiss-Prot
Match: SYKC_YEAST (Lysyl-tRNA synthetase, cytoplasmic OS=Saccharomyces cerevisiae GN=KRS1 PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.792e-11
Identity = 29/37 (78.38%), Postives = 31/37 (83.78%), Query Frame = 3
Query:    3 LEYGLPPTAGWGLGIDRLAMLLTDSQNIKEVLLFPAM 113
            LEYGLPPT GWG GIDRLAM LTDS  I+EVLLFP +
Sbjct:  540 LEYGLPPTGGWGCGIDRLAMFLTDSNTIREVLLFPTL 576          
The following BLAST results are available for this feature:
BLAST of CX675716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SYK_ORYSJ9.463e-1494.59Lysyl-tRNA synthetase OS=Oryza sativa subsp. japon... [more]
SYK_HUMAN4.696e-1389.19Lysyl-tRNA synthetase OS=Homo sapiens GN=KARS PE=1... [more]
SYK_MOUSE6.134e-1389.19Lysyl-tRNA synthetase OS=Mus musculus GN=Kars PE=1... [more]
SYK_CRIGR1.366e-1286.49Lysyl-tRNA synthetase OS=Cricetulus griseus GN=KAR... [more]
SYK_CAEEL1.785e-1283.78Lysyl-tRNA synthetase OS=Caenorhabditis elegans GN... [more]
SYK_SOLLC1.157e-1183.78Lysyl-tRNA synthetase OS=Solanum lycopersicum GN=L... [more]
SYK_ARATH1.157e-1186.49Lysyl-tRNA synthetase OS=Arabidopsis thaliana GN=A... [more]
SYKC_YEAST9.792e-1178.38Lysyl-tRNA synthetase, cytoplasmic OS=Saccharomyce... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_64C05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-64C05-E10-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675716 ID=CX675716; Name=CX675716; organism=Citrus sinensis; type=EST; length=415bp
CTCTTGAGTATGGGTTGCCTCCGACTGCTGGCTGGGGTCTAGGCATCGAT
CGGCTGGCTATGTTGCTTACTGACTCACAAAATATCAAGGAGGTTCTTCT
CTTCCCAGCCATGAAGCCTCAAGATGAACCTGCTGCTGCTAAAGCAGCAA
CTCAGTGAGTTTGAACTGTTGAATTCGAGAAAGTTTAATTTGTTTCTTGT
ATGCGCTATCGGCATTCCAAGAGGAAGTCCTGCCAGTCAACTTTTTGTTA
TTAATTTTGCTCCGGTTAGTTATTGTTTAGGGTTTTATTATAGAACCCTT
TCAGTGTGGGGTATTTTGTGAAGTGCCATATCATGGTATTTATTAAGTAT
AGTGGACATATATATTATTTTAAATTTTACCAATTTGAATCAGCTTGTTA
AAAAAAAAAAAAAAA
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