CX675715

Overview
NameCX675715
Unique NameCX675715
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length419
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675715 vs. ExPASy Swiss-Prot
Match: SYK_ORYSJ (Lysyl-tRNA synthetase OS=Oryza sativa subsp. japonica GN=Os03g0586800 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.226e-14
Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = -3
Query:  304 ALEYGLPPTAGWGLGIDRLAMLLTDSQNIKEVLLFPAM 417
            ALEYGLPPT GWGLGIDRL MLLTDSQNIKEVLLFPAM
Sbjct:  561 ALEYGLPPTGGWGLGIDRLTMLLTDSQNIKEVLLFPAM 598          
BLAST of CX675715 vs. ExPASy Swiss-Prot
Match: SYK_HUMAN (Lysyl-tRNA synthetase OS=Homo sapiens GN=KARS PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 1.601e-13
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = -3
Query:  304 ALEYGLPPTAGWGLGIDRLAMLLTDSQNIKEVLLFPAM 417
            ALEYGLPPTAGWG+GIDR+AM LTDS NIKEVLLFPAM
Sbjct:  536 ALEYGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFPAM 573          
BLAST of CX675715 vs. ExPASy Swiss-Prot
Match: SYK_MOUSE (Lysyl-tRNA synthetase OS=Mus musculus GN=Kars PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.091e-13
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = -3
Query:  304 ALEYGLPPTAGWGLGIDRLAMLLTDSQNIKEVLLFPAM 417
            ALEYGLPPTAGWG+GIDRL M LTDS NIKEVLLFPAM
Sbjct:  534 ALEYGLPPTAGWGMGIDRLTMFLTDSNNIKEVLLFPAM 571          
BLAST of CX675715 vs. ExPASy Swiss-Prot
Match: SYK_CRIGR (Lysyl-tRNA synthetase OS=Cricetulus griseus GN=KARS PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.659e-13
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = -3
Query:  304 ALEYGLPPTAGWGLGIDRLAMLLTDSQNIKEVLLFPAM 417
            ALEYGLPPTAGWG+GIDR+ M LTDS NIKEVLLFPAM
Sbjct:  536 ALEYGLPPTAGWGMGIDRVTMFLTDSNNIKEVLLFPAM 573          
BLAST of CX675715 vs. ExPASy Swiss-Prot
Match: SYK_CAEEL (Lysyl-tRNA synthetase OS=Caenorhabditis elegans GN=krs-1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.084e-13
Identity = 32/38 (84.21%), Postives = 36/38 (94.74%), Query Frame = -3
Query:  304 ALEYGLPPTAGWGLGIDRLAMLLTDSQNIKEVLLFPAM 417
            ALEYGLPPT GWG+GIDRL+M+LTD+ NIKEVLLFPAM
Sbjct:  516 ALEYGLPPTGGWGMGIDRLSMILTDNNNIKEVLLFPAM 553          
BLAST of CX675715 vs. ExPASy Swiss-Prot
Match: SYK_SOLLC (Lysyl-tRNA synthetase OS=Solanum lycopersicum GN=LYSRS PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.944e-12
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = -3
Query:  304 ALEYGLPPTAGWGLGIDRLAMLLTDSQNIKEVLLFPAM 417
            ALEYGLPPT G G+GIDRL MLLTDSQN+KEV+LFPAM
Sbjct:  548 ALEYGLPPTGGLGMGIDRLTMLLTDSQNVKEVILFPAM 585          
BLAST of CX675715 vs. ExPASy Swiss-Prot
Match: SYK_ARATH (Lysyl-tRNA synthetase OS=Arabidopsis thaliana GN=At3g11710 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.944e-12
Identity = 33/38 (86.84%), Postives = 34/38 (89.47%), Query Frame = -3
Query:  304 ALEYGLPPTAGWGLGIDRLAMLLTDSQNIKEVLLFPAM 417
            ALEYGL PT GWGLGIDRL+MLLTDS NIKEVL FPAM
Sbjct:  570 ALEYGLAPTGGWGLGIDRLSMLLTDSLNIKEVLFFPAM 607          
BLAST of CX675715 vs. ExPASy Swiss-Prot
Match: SYKC_YEAST (Lysyl-tRNA synthetase, cytoplasmic OS=Saccharomyces cerevisiae GN=KRS1 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.339e-11
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = -3
Query:  304 ALEYGLPPTAGWGLGIDRLAMLLTDSQNIKEVLLFPAM 417
            ALEYGLPPT GWG GIDRLAM LTDS  I+EVLLFP +
Sbjct:  539 ALEYGLPPTGGWGCGIDRLAMFLTDSNTIREVLLFPTL 576          
BLAST of CX675715 vs. ExPASy Swiss-Prot
Match: SYKC_SCHPO (Lysyl-tRNA synthetase, cytoplasmic OS=Schizosaccharomyces pombe GN=krs1 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.360e-11
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = -3
Query:  304 ALEYGLPPTAGWGLGIDRLAMLLTDSQNIKEVLLFPAM 417
            ALEYGLPPT GWG+G+DRL M LTDS  I+EVLLFP M
Sbjct:  540 ALEYGLPPTGGWGMGVDRLVMFLTDSNTIREVLLFPHM 577          
BLAST of CX675715 vs. ExPASy Swiss-Prot
Match: GPA_LEIDO (Putative guanine nucleotide-binding protein subunit alpha OS=Leishmania donovani PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.714e-11
Identity = 30/38 (78.95%), Postives = 31/38 (81.58%), Query Frame = -3
Query:  304 ALEYGLPPTAGWGLGIDRLAMLLTDSQNIKEVLLFPAM 417
            ALE+ LPPT GWGLGIDRL M LT   NIKEVLLFPAM
Sbjct:  287 ALEHALPPTGGWGLGIDRLVMFLTSQSNIKEVLLFPAM 324          
The following BLAST results are available for this feature:
BLAST of CX675715 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
SYK_ORYSJ3.226e-1494.74Lysyl-tRNA synthetase OS=Oryza sativa subsp. japon... [more]
SYK_HUMAN1.601e-1389.47Lysyl-tRNA synthetase OS=Homo sapiens GN=KARS PE=1... [more]
SYK_MOUSE2.091e-1389.47Lysyl-tRNA synthetase OS=Mus musculus GN=Kars PE=1... [more]
SYK_CRIGR4.659e-1386.84Lysyl-tRNA synthetase OS=Cricetulus griseus GN=KAR... [more]
SYK_CAEEL6.084e-1384.21Lysyl-tRNA synthetase OS=Caenorhabditis elegans GN... [more]
SYK_SOLLC3.944e-1284.21Lysyl-tRNA synthetase OS=Solanum lycopersicum GN=L... [more]
SYK_ARATH3.944e-1286.84Lysyl-tRNA synthetase OS=Arabidopsis thaliana GN=A... [more]
SYKC_YEAST3.339e-1178.95Lysyl-tRNA synthetase, cytoplasmic OS=Saccharomyce... [more]
SYKC_SCHPO4.360e-1176.32Lysyl-tRNA synthetase, cytoplasmic OS=Schizosaccha... [more]
GPA_LEIDO9.714e-1178.95Putative guanine nucleotide-binding protein subuni... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_64C05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-64C05-E10-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675715 ID=CX675715; Name=CX675715; organism=Citrus sinensis; type=EST; length=419bp
TTTTTTTTTTTTTTTTTAACAAGCTGATTCAAATTGGTAAAATTTAAAAT
AATATATATGTCCACTATACTTAATAAATACCATGATATGGCACTTCACA
AAATACCCCACACTGAAAGGGTTCTATAATAAAACCCTAAACAATAACTA
ACCGGAGCAAAATTAATAACAAAAAGTTGACTGGCAGGACTTCCTCTTGG
AATGCCGATAGCGCATACAAGAAACAAATTAAACTTTCTCGAATTCAACA
GTTCAAACTCACTGAGTTGCTGCTTTAGCAGCAGCAGGTTCATCTTGAGG
CTTCATGGCTGGGAAGAGAAGAACCTCCTTGATATTTTGTGAGTCAGTAA
GCAACATAGCCAGCCGATCGATGCCTAGACCCCAGCCAGCAGTCGGAGGC
AACCCATACTCAAGAGCCT
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