CK939683

Overview
NameCK939683
Unique NameCK939683
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9565 contig Csv1_Contig9565:167..1093. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_PEA (Imidazoleglycerol-phosphate dehydratase OS=Pisum sativum GN=HIS3 PE=2 SV=1)

HSP 1 Score: 375.941 bits (964), Expect = 1.747e-103
Identity = 194/241 (80.50%), Postives = 210/241 (87.14%), Query Frame = 1
Query:   46 STQYCSSTRRMNSLTTPRASLNPDGDSKHNNGSASTSSAVD-SGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVLLRS 765
            S  + + T  MN  TT   SL+     +HNNGS STS       R+GEVKRVTKETNVSVKIN+DGSGVADSST IPFLDHMLDQLASHGLFDVHV+ATGD+ IDDHHTNEDV LAIGTALLQALGDRKGINRFGDF+APLDEALIHVSLDLSGRPHL+Y+L IPTQRVGTYDTQ+VEHF QS+VNTSGMTLHIRQLAG+NSHHIIEATFKAFARALRQATEYDPRR G++PSSKGVL RS
Sbjct:   44 SPNHLTLTTPMNPPTT---SLSSAAFVEHNNGSTSTSLPFHPETRVGEVKRVTKETNVSVKINLDGSGVADSSTGIPFLDHMLDQLASHGLFDVHVKATGDVHIDDHHTNEDVALAIGTALLQALGDRKGINRFGDFSAPLDEALIHVSLDLSGRPHLSYNLDIPTQRVGTYDTQVVEHFLQSIVNTSGMTLHIRQLAGRNSHHIIEATFKAFARALRQATEYDPRRRGSVPSSKGVLSRS 281          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7B_ARATH (Imidazoleglycerol-phosphate dehydratase 2 OS=Arabidopsis thaliana GN=At4g14910 PE=2 SV=2)

HSP 1 Score: 375.941 bits (964), Expect = 1.747e-103
Identity = 199/255 (78.04%), Postives = 215/255 (84.31%), Query Frame = 1
Query:   25 SRKLLPISTQYCSSTRR------MNSLTTPRASLNPDGDSKHNNG--SASTSSAVDSGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVLLRS 765
            SR LLP  T   SS         MNS +  R S++       +NG  + +T+S ++S RIGEVKR TKETNVSVKIN+DG GV+DSST IPFLDHMLDQLASHGLFDVHVRATGD  IDDHHTNEDV LAIGTALL+ALG+RKGINRFGDFTAPLDEALIHVSLDLSGRP+L Y+L+IPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATE DPRRGGTIPSSKGVL RS
Sbjct:   18 SRALLPPRTSIASSHPPPPRFLVMNSQSQHRPSISCASPPPGDNGFPAITTASPIESARIGEVKRETKETNVSVKINLDGHGVSDSSTGIPFLDHMLDQLASHGLFDVHVRATGDTHIDDHHTNEDVALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATESDPRRGGTIPSSKGVLSRS 272          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7A_ARATH (Imidazoleglycerol-phosphate dehydratase 1 OS=Arabidopsis thaliana GN=At3g22425 PE=1 SV=1)

HSP 1 Score: 373.629 bits (958), Expect = 8.668e-103
Identity = 196/250 (78.40%), Postives = 217/250 (86.80%), Query Frame = 1
Query:   22 LSRKLLPISTQYCSSTR--RMNSLTTPRASLNPDGDSKHNNGSASTSSAVDSGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVLLRS 765
            L R+ + +S+   S  R  RM S +  R S++          SAS+SS++  GRIGEVKRVTKETNVSVKIN+DG+GVADSS+ IPFLDHMLDQLASHGLFDVHVRATGD+ IDDHHTNED+ LAIGTALL+ALG+RKGINRFGDFTAPLDEALIHVSLDLSGRP+L Y+L+IPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAG+NSHHIIEATFKAFARALRQATE DPRRGGTIPSSKGVL RS
Sbjct:   30 LPRRAMIVSSPSSSLPRFLRMESQSQLRQSISC---------SASSSSSMALGRIGEVKRVTKETNVSVKINLDGTGVADSSSGIPFLDHMLDQLASHGLFDVHVRATGDVHIDDHHTNEDIALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGENSHHIIEATFKAFARALRQATETDPRRGGTIPSSKGVLSRS 270          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_WHEAT (Imidazoleglycerol-phosphate dehydratase (Fragment) OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 335.109 bits (858), Expect = 3.417e-91
Identity = 168/195 (86.15%), Postives = 179/195 (91.79%), Query Frame = 1
Query:  181 GEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVLLRS 765
            GEVKRVTKETNV VKIN+DG+GVA+SST IPFLDHMLDQLASHGLFDV+V+ATGD  IDDHH+NED+ LAIGTALLQALGDRKGINRFG FTAPLDEA + V LDLSGRPHL+  L IPT+RVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAG NSHHIIEATFKAFARALRQATEYD RR GT+PSSKGVL RS
Sbjct:    1 GEVKRVTKETNVHVKINLDGTGVANSSTGIPFLDHMLDQLASHGLFDVYVKATGDTHIDDHHSNEDIALAIGTALLQALGDRKGINRFGHFTAPLDEAAVEVILDLSGRPHLSCGLSIPTERVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGNNSHHIIEATFKAFARALRQATEYDLRRQGTMPSSKGVLSRS 195          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_ANASP (Imidazoleglycerol-phosphate dehydratase OS=Anabaena sp. (strain PCC 7120) GN=hisB PE=3 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 3.433e-75
Identity = 139/194 (71.65%), Postives = 159/194 (81.96%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            RI  V R+T ETNV V +N+DG+G+  ++T IPFLDHML Q++SHGL D+ V+A GD  IDDHHTNEDVG+ +G AL +ALGDRKGI RFG+F APLDEAL+ V+LD SGRPHL+Y LQIPT+RVGTYDTQLV  FF +LVN S MTLHIRQL G NSHHIIEATFKAFARA R A E DPRR GTIPSSKGVL
Sbjct:   16 RIASVHRITGETNVQVTVNLDGTGICKAATGIPFLDHMLHQISSHGLIDLDVQAKGDWEIDDHHTNEDVGITLGQALAKALGDRKGIVRFGNFLAPLDEALVQVALDFSGRPHLSYGLQIPTERVGTYDTQLVREFFVALVNHSQMTLHIRQLDGINSHHIIEATFKAFARAARMAIEVDPRRAGTIPSSKGVL 209          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_SYNY3 (Imidazoleglycerol-phosphate dehydratase OS=Synechocystis sp. (strain PCC 6803) GN=hisB PE=3 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 5.855e-75
Identity = 139/194 (71.65%), Postives = 158/194 (81.44%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R   V RVTKET+V V +N+ GSG+   +T +PFLDHML Q+ASHGL D+ V ATGDI IDDHHTNEDVG+ +G AL +ALGDR+GINRFG F APLDEAL+ V+LD SGRPHL+Y LQIPT+RVGTYDTQLV  FF ++VN S MTLHIRQL G NSHHIIEATFKAFARA+R A E DPRR  TIPSSKGVL
Sbjct:   17 RAAAVHRVTKETDVRVSLNLMGSGLCHVATGVPFLDHMLHQIASHGLIDLEVNATGDIEIDDHHTNEDVGITLGQALAEALGDRRGINRFGHFIAPLDEALVQVTLDFSGRPHLSYGLQIPTERVGTYDTQLVREFFVAVVNHSQMTLHIRQLDGINSHHIIEATFKAFARAMRMAIEVDPRRADTIPSSKGVL 210          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_SYNSC (Imidazoleglycerol-phosphate dehydratase OS=Synechococcus sp. (strain CC9605) GN=hisB PE=3 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 9.987e-75
Identity = 133/194 (68.56%), Postives = 160/194 (82.47%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R G + RVT ET+V V++++DGSG   +ST +PFLDHML Q++SHGL D+ + A GD  IDDHHTNEDVG+A+G AL QALGDR+GI+RFG F APLDEAL+ V+LD SGRPHL+Y L IP+QR+GTYDT+LV+ FF ++VN SG+TLHIRQL G NSHHI+EA FKAFARALR ATE DPRR G IPSSKGVL
Sbjct:    3 RQGTIHRVTGETDVKVRLDLDGSGQCQASTGVPFLDHMLHQISSHGLIDLEINAVGDTHIDDHHTNEDVGIAVGQALAQALGDRRGIHRFGHFVAPLDEALVQVALDCSGRPHLSYSLAIPSQRIGTYDTELVKEFFVAVVNNSGLTLHIRQLDGVNSHHIVEACFKAFARALRMATEVDPRRAGAIPSSKGVL 196          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_SYNS9 (Imidazoleglycerol-phosphate dehydratase OS=Synechococcus sp. (strain CC9902) GN=hisB PE=3 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 1.304e-74
Identity = 133/194 (68.56%), Postives = 161/194 (82.99%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R GEV R T ET+V VK+++DGSG  ++ST +PFLDHML+Q++SHGL D+ + A GD  IDDHHTNEDVG+A+G AL QALGDRKGI+RFG F APLDEAL+ V+LD SGRPH++Y L IPTQ++G+YDT+LV+ FF ++ N SG+TLHIRQL G NSHHI+EA FKAFARALR ATE DPRR G IPSSKGVL
Sbjct:    2 RTGEVHRHTGETDVKVKLDLDGSGCCEASTGVPFLDHMLNQISSHGLIDLTITAVGDTHIDDHHTNEDVGIAVGQALSQALGDRKGIHRFGHFVAPLDEALVQVALDCSGRPHISYGLTIPTQKIGSYDTELVKEFFVAVANNSGLTLHIRQLDGVNSHHIVEACFKAFARALRMATEIDPRRAGAIPSSKGVL 195          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_SYNPW (Imidazoleglycerol-phosphate dehydratase OS=Synechococcus sp. (strain WH7803) GN=hisB PE=3 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 1.304e-74
Identity = 132/194 (68.04%), Postives = 160/194 (82.47%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R GE+ RVT ET+V V++N+DGSG   +ST + FLDHML Q++SHGL D+ + A GD  IDDHHTNEDVG+A+G AL QALGDR+GI+RFG F APLDEAL+ V+LD SGRPHL+Y L IP+Q++GTYDT+LV+ FF ++VN SG+TLHIRQL G NSHHI+EA FKAFARALRQATE DPRR   +PSSKGVL
Sbjct:    3 RTGEIHRVTGETDVQVRLNLDGSGQCQASTGVAFLDHMLQQISSHGLIDLEISARGDTHIDDHHTNEDVGIAVGQALAQALGDRRGIHRFGHFLAPLDEALVQVALDCSGRPHLSYSLSIPSQKIGTYDTELVKEFFVAVVNNSGLTLHIRQLDGANSHHIVEACFKAFARALRQATEIDPRRADAVPSSKGVL 196          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_SYNPX (Imidazoleglycerol-phosphate dehydratase OS=Synechococcus sp. (strain WH8102) GN=hisB PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 4.957e-74
Identity = 130/194 (67.01%), Postives = 161/194 (82.99%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R G++ RVT ET+V V++++DGSG   +ST +PFLDHML Q++SHGL D+ + A GD  IDDHHTNEDVG+A+G AL QALGDR+GI+RFG F APLDEAL+ V+LD SGRPHL+Y L IP+Q++G+YDT+LV+ FF ++VN SG+TLHIRQL G NSHHI+EA FKAF+RALR ATE DPRR G IPSSKGVL
Sbjct:    3 RQGDIHRVTGETDVKVRLDLDGSGQCQASTGVPFLDHMLHQISSHGLIDLEINAVGDTHIDDHHTNEDVGIAVGQALAQALGDRRGIHRFGHFAAPLDEALVQVALDCSGRPHLSYSLSIPSQKIGSYDTELVKEFFVAVVNNSGLTLHIRQLDGVNSHHIVEACFKAFSRALRMATEIDPRRAGAIPSSKGVL 196          
The following BLAST results are available for this feature:
BLAST of CK939683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HIS7_PEA1.747e-10380.50Imidazoleglycerol-phosphate dehydratase OS=Pisum s... [more]
HIS7B_ARATH1.747e-10378.04Imidazoleglycerol-phosphate dehydratase 2 OS=Arabi... [more]
HIS7A_ARATH8.668e-10378.40Imidazoleglycerol-phosphate dehydratase 1 OS=Arabi... [more]
HIS7_WHEAT3.417e-9186.15Imidazoleglycerol-phosphate dehydratase (Fragment)... [more]
HIS7_ANASP3.433e-7571.65Imidazoleglycerol-phosphate dehydratase OS=Anabaen... [more]
HIS7_SYNY35.855e-7571.65Imidazoleglycerol-phosphate dehydratase OS=Synecho... [more]
HIS7_SYNSC9.987e-7568.56Imidazoleglycerol-phosphate dehydratase OS=Synecho... [more]
HIS7_SYNS91.304e-7468.56Imidazoleglycerol-phosphate dehydratase OS=Synecho... [more]
HIS7_SYNPW1.304e-7468.04Imidazoleglycerol-phosphate dehydratase OS=Synecho... [more]
HIS7_SYNPX4.957e-7467.01Imidazoleglycerol-phosphate dehydratase OS=Synecho... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004747_A02 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIIF_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939683 ID=CK939683; Name=CK939683; organism=Citrus sinensis; type=EST; length=927bp
GGGGTTAAACCAAAAACCAATCTCTCTCGTAAACTTCTCCCCATCTCCAC
ACAATACTGCTCCTCAACGCGCCGCATGAACTCCCTCACAACACCACGCG
CCTCTCTAAACCCAGACGGCGACAGCAAACACAACAACGGGTCCGCCTCA
ACTTCCTCTGCCGTCGATTCTGGTCGAATTGGGGAAGTGAAAAGAGTCAC
GAAAGAGACCAACGTTTCTGTGAAGATTAACGTCGATGGCTCTGGCGTTG
CTGATTCATCCACTTGCATTCCCTTCCTAGATCACATGCTTGATCAACTG
GCTTCGCACGGGCTATTTGATGTGCACGTGAGGGCAACCGGAGACATTCG
CATTGATGATCATCATACCAATGAAGACGTTGGGCTTGCCATTGGCACGG
CATTGCTGCAGGCTCTTGGTGATAGGAAAGGAATTAATCGGTTTGGTGAT
TTTACAGCTCCTCTTGATGAAGCTTTGATTCATGTTTCATTGGATTTATC
TGGACGGCCACATTTAAATTATGATTTGCAAATTCCCACACAGAGAGTTG
GAACTTACGACACTCAATTGGTGGAGCACTTTTTCCAGTCTTTGGTGAAC
ACTTCTGGAATGACTCTTCATATTCGACAGCTTGCTGGAAAAAATTCTCA
TCACATTATTGAGGCAACCTTCAAAGCTTTTGCTAGGGCTCTCCGACAAG
CAACAGAGTATGATCCACGTCGCGGTGGAACTATACCAAGCTCAAAAGGG
GTTCTACTACGATCTTGATACTTCACGGGATTCATGGACTGGGGATGGGG
TTCTTCATGTAGCCTTAAGATTATTGTTAAGAGGGTTATAACTTCATCAC
CGGCTCCTACCATATGCATTAAAAGGTGTTCTTTTGATTTCTGGTGGTTC
ACTCTCATATCATTNNNGGNANNTGTG
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