CK939682

Overview
NameCK939682
Unique NameCK939682
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length836
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2260 contig Csv1_Contig2260:182..1017. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939682 vs. ExPASy Swiss-Prot
Match: WRK53_ARATH (Probable WRKY transcription factor 53 OS=Arabidopsis thaliana GN=WRKY53 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.842e-28
Identity = 73/183 (39.89%), Postives = 106/183 (57.92%), Query Frame = 2
Query:  371 RSTMDRDQNILITELAQGKELAKRLRNHLNPSSSP------------ETREFLVQEILSSYEKALSMLNYSHS----LQSNKLDITMVESPRSFPNTATS----PRSD-------ASDQDYCKDVV--SKKRKTMPQWTEQVKVTSGTALEGTLDDGYCWRKYGQKDILGRNFPRGYYRCTHR 832
            R  +  +Q  L++EL  G + AK+L+  L  + SP            ET E LV++I+SSYE++L +LN+S S    L    + +  V +P S P +  S    PRS+       +S+  + +D +  SKKRK +P+W+E+V+++    LEG  DD + WRKYGQKDILG  FPR YYRCTHR
Sbjct:    4 RDMLSWEQKTLLSELINGFDAAKKLQARLREAPSPSSSFSSPATAVAETNEILVKQIVSSYERSLLLLNWSSSPSVQLIPTPVTVVPVANPGSVPESPASINGSPRSEEFADGGGSSESHHRQDYIFNSKKRKMLPKWSEKVRISPERGLEGPQDDVFSWRKYGQKDILGAKFPRSYYRCTHR 186          
BLAST of CK939682 vs. ExPASy Swiss-Prot
Match: WRK30_ARATH (Probable WRKY transcription factor 30 OS=Arabidopsis thaliana GN=WRKY30 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.789e-25
Identity = 59/140 (42.14%), Postives = 85/140 (60.71%), Query Frame = 2
Query:  413 LAQGKELAKRLRNHLNPSSSPETREFLVQEILSSYEKALSMLNYSHSLQSNKLDITMVESPRSFPNTATSPRSDASDQDYCKDVVSKKRKTMPQWTEQVKVTSGTALEGTLDDGYCWRKYGQKDILGRNFPRGYYRCTHR 832
            + +G++ A    +    +SS ETRE L ++IL SY K+L+++NYS  L                     SP+SD SDQ+    V+   +K+MP+W+ +V++  G  ++ TLDDG+ WRKYGQKDILG  FPRGYYRCT+R
Sbjct:   21 MIEGRDYA----HQFGSASSQETREHLAKKILQSYHKSLTIMNYSGELDQ-------------VSQGGGSPKSDDSDQEPL--VIKSSKKSMPRWSSKVRIAPGAGVDRTLDDGFSWRKYGQKDILGAKFPRGYYRCTYR 141          
BLAST of CK939682 vs. ExPASy Swiss-Prot
Match: WRK41_ARATH (Probable WRKY transcription factor 41 OS=Arabidopsis thaliana GN=WRKY41 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.999e-23
Identity = 66/167 (39.52%), Postives = 97/167 (58.08%), Query Frame = 2
Query:  380 MDRDQNILITELAQGKELAKRLRNHLNPSSSP-------ETREFLVQEILSSYEKALSMLNYSHSLQSNKLDITM--VESPRSFPNTATS----PRSDASDQDYCKD--VVSKKRKTMPQWTEQVKVTSGTALEGTLDDGYCWRKYGQKDILGRNFPRGYYRCTHRH 835
            M+ ++  L+ EL  G + AK+L+   +PS S        E +E L+  I+SS++KA+ MLN S +  +  +++    +  P   P +  S    PRS+       K+  + SKKRK +P+WTEQV+++    LEG  DD + WRKYGQKDILG  FPR YYRCT R+
Sbjct:    4 MNWERRSLLNELIHGLKAAKQLQGSSSPSLSASSSYLTTEIKENLLHNIVSSFKKAILMLNGSTTQHNPTIELAPDPLAHPGKVPGSPASITGNPRSEEFFNVRSKEFNLSSKKRKMLPKWTEQVRISPERGLEGPHDDIFSWRKYGQKDILGAKFPRSYYRCTFRN 170          
BLAST of CK939682 vs. ExPASy Swiss-Prot
Match: WRK46_ARATH (Probable WRKY transcription factor 46 OS=Arabidopsis thaliana GN=WRKY46 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.444e-21
Identity = 60/154 (38.96%), Postives = 86/154 (55.84%), Query Frame = 2
Query:  380 MDRDQNILITELAQGKELAKRLRNHLNPSSSPETREFLVQEILSSYEKALSMLNYSH--SLQSNKLDITMVESPRSFPNTATSPRSDASDQDYCKDVVSKKRKTMPQWTEQVKVTSGTALE-GTLDDGYCWRKYGQKDILGRNFPRGYYRCTHR 832
            M  ++ ++I EL  GKELA RL N+L  +SS ++ + L+ +IL  Y+ A+ ML+++   ++    L+I   +S   F                      KKRK   + TE+VKV   T  E G++DDG+CWRKYGQK+I G   PR YYRCTHR
Sbjct:    1 MMMEEKLVINELELGKELANRLMNNLKHTSSVDSNKTLISDILRIYQNAIFMLSFNQDKNILKRSLEIDGKDSKNVF----------------------KKRKVSEKNTEKVKVFVATEQENGSIDDGHCWRKYGQKEIHGSKNPRAYYRCTHR 132          
The following BLAST results are available for this feature:
BLAST of CK939682 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
WRK53_ARATH7.842e-2839.89Probable WRKY transcription factor 53 OS=Arabidops... [more]
WRK30_ARATH2.789e-2542.14Probable WRKY transcription factor 30 OS=Arabidops... [more]
WRK41_ARATH1.999e-2339.52Probable WRKY transcription factor 41 OS=Arabidops... [more]
WRK46_ARATH5.444e-2138.96Probable WRKY transcription factor 46 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004746_H12 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIF_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939682 ID=CK939682; Name=CK939682; organism=Citrus sinensis; type=EST; length=836bp
GGGGATTTCAGGAAATCAAAAAACACGACTCAGTCAAAAGTTGATCTCTC
TTCCTTCTTATTTCTGTCCAATATCCTCTACTCTTTCGCCTCAGCTTCAA
CTCTCGTTCACTACGAAAGCACTTTTCTTCTTTTCTTAATCTTCTTCCTT
CAAGTAATCAATTCGCATGATCTTGATTACTAGAGCACTTGTGTAACCGA
ATAAAACAAAATTCAAGATTTAGAGTGGTTTTGGTCACATCCTAGCTCAC
ATTTTGGTTCCTTTGCTCGTATGAATTGGACTTGCTAGTGATCTCTCTGC
TCAGACTCGTACGGATTCCGGTACTTAGTGTTTCGTCAATTGGTTGCTAG
GGAATTGTTCAGATATGAAAAGGTCGACGATGGATAGGGATCAAAATATT
CTTATTACTGAGCTAGCACAAGGGAAAGAGCTAGCTAAGCGGCTTAGGAA
TCATCTGAATCCATCTTCCTCTCCAGAAACTCGCGAATTCTTAGTACAAG
AGATTCTTTCTTCTTATGAGAAAGCACTTTCAATGCTAAATTATAGTCAT
TCTCTCCAGTCCAATAAGCTCGACATCACCATGGTTGAATCACCACGTTC
TTTTCCCAACACTGCTACTAGCCCAAGAAGCGATGCTTCTGATCAAGACT
ATTGTAAAGATGTCGTATCCAAGAAGAGAAAGACAATGCCTCAATGGACT
GAACAAGTAAAGGTTACCTCGGGGACAGCATTGGAAGGGACTCTTGATGA
TGGTTATTGCTGGAGAAAATATGGCCAGAAAGATATTCTTGGTCGTAATT
TTCCAAGAGGGTATTACAGGTGCACCCATCGTCATG
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