CX675714

Overview
NameCX675714
Unique NameCX675714
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX675714_ssr565 microsatellite CX675714_ssr565:565..576. BLAST: Citrus ESTs to Prunus persica proteins V1
CX675714_ssr114 microsatellite CX675714_ssr114:114..125. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4263 contig Csv1_Contig4263:1..769. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX675714 vs. ExPASy Swiss-Prot
Match: USPAL_ARATH (Universal stress protein A-like protein OS=Arabidopsis thaliana GN=At3g01520 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.421e-14
Identity = 36/97 (37.11%), Postives = 58/97 (59.79%), Query Frame = -1 
Query:  204 AFYATSSMVESVRKSQEENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHTVCPIIIVK 494
            + YA+      +R+S +     LL   +  C +  V  E+ +  GDPKD+ICQ  +++  D LVVGSRGLG+ ++ F+G+VS +C  H  CP++ +K
Sbjct:   66 SIYASPEDFRDMRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVMTIK 162
[Close]
BLAST of CX675714 vs. ExPASy Swiss-Prot
Match: YXIE_BACSU (Uncharacterized protein yxiE OS=Bacillus subtilis GN=yxiE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.299e-11
Identity = 46/158 (29.11%), Postives = 77/158 (48.73%), Query Frame = -1 
Query:  204 KVMVAIDESAESFNALKWALDNHYGIVGFTPEAGGGGGILTIVHVQEPFQRFVLPALSTSSAFYATSSMVESVRKSQEENSAALLSRALQMCKDKMVKAESLVLEGDPKDMICQSAEQMHIDLLVVGSRGLGKIKRAFLGSVSDYCAHHTVCPIIIVK 677
            K++VAID S  S  AL  A+            A      L+I+HV    +  V+   S +   Y     ++ +R   ++    +L  A +   +K V+AE++   G+P   I   A++  + L+VVGSRG+  +K   LGSVS   +  + CP++IV+
Sbjct:    4 KMLVAIDGSDMSAKALDAAVHL----------AKEQQAELSILHVG---REAVVTTSSLTGIVYVPEHFIDEIRNEVKKEGLKILENAKEKAAEKGVQAETIYANGEPAHEILNHAKEKGVSLIVVGSRGISGLKEMMLGSVSHKVSQLSTCPVLIVR 148
The following BLAST results are available for this feature:
BLAST of CX675714 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
USPAL_ARATH1.421e-1437.11Universal stress protein A-like protein OS=Arabido... [more]
YXIE_BACSU7.299e-1129.11Uncharacterized protein yxiE OS=Bacillus subtilis ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_64C04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-64C04-E8-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675714 ID=CX675714; Name=CX675714; organism=Citrus sinensis; type=EST; length=752bp
CCCCCCCCCCTTTTTTTGGTATCCAATGTTTTTATAACTTGAAAAGCATG
AAAAGTTTCCATGTAACCATTCGAAATTGCAGAAAATGAAACTTACACAT
TGTTATATACTGCACAAACAAACAAAACCACATTCTTCAGATCACAAACT
TTCACTATGCCACAGTCCTTGTAGTTCTGCTACTCATGCTGTTCCTTGGG
TGGCTTTACAATAATGATCGGGCATACAGTATGATGCGCACAGTAATCAC
TTACACTCCCCAAGAATGCCCTTTTAATCTTGCCGAGGCCGCGGCTTCCG
ACAACAAGGAGATCAATGTGCATTTGCTCAGCAGACTGACAAATCATGTC
CTTTGGATCCCCTTCAAGAACCAGACTCTCTGCTTTCACCATCTTATCTT
TACACATCTGCAATGCCCGGGAAAGTAACGCCGCTGAATTTTCTTCTTGG
GATTTCCTCACAGATTCTACCATCGAAGATGTTGCATAAAATGCTGAACT
GGTACTTAAGGCTGGCAAAACGAAGCGCTGAAATGGCTCCTGAACATGAA
CGATTGTTAGGATACCGCCGCCGCCGCCAGCTTCCGGCGTAAAGCCGACG
ATGCCATAATGATTGTCAAGAGCCCATTTGAGTGCATTGAAACTCTCTGC
ACTTTCATCAATAGCCACCATCACCTTCATCTTCTTCATGCCGTCTGTCA
TTTTTGGCTCCTCTTCTTCTTTTGATTGCAGCATTGCTGACCCTGAACCA
CC
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