CK939656

Overview
NameCK939656
Unique NameCK939656
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK939656 vs. ExPASy Swiss-Prot
Match: Y4966_ARATH (Uncharacterized protein At4g29660 OS=Arabidopsis thaliana GN=EMB2752 PE=4 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.073e-36
Identity = 63/91 (69.23%), Postives = 79/91 (86.81%), Query Frame = 3 
Query:  213 SYLWRKYADYVYTKWERTLIWDMIEPYRRPKSFTPLVSIYVAAFYTGVIAAAINEQLYKERYWEDHPGEAVPLMRPTFYGGPWKVYKGDTL 485
            S LWRKYADY Y K+ER  +W+MIEPYRRPK+FT L++IYVAAFYTGVI AA+ EQLYKE++WE+HPG+ VPLM+P FY GPW+VY+G+ +
Sbjct:    6 SQLWRKYADYKYNKFERFAVWEMIEPYRRPKTFTTLITIYVAAFYTGVIGAAVTEQLYKEKFWEEHPGKTVPLMKPVFYRGPWRVYRGEAI 96
The following BLAST results are available for this feature:
BLAST of CK939656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4966_ARATH1.073e-3669.23Uncharacterized protein At4g29660 OS=Arabidopsis t... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004747_D04 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIIF_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939656 ID=CK939656; Name=CK939656; organism=Citrus sinensis; type=EST; length=672bp
GGGGAGAGCAGCGAACTCCAAAGCGCTCCGAAGTCCAAACGAAATCCTGC
AGCGTGAATTGACACCCGCTGCTGAGTTGCGCCGCCGCTTCACGGCTGTC
ACCACTGACCTTCAAAAGGCAGCTTGGGTGGCGGGACATAGGGTTTATTG
AGGGGCCGTCCAAGGGCAGTGTGAGTGGCAGTGGAAGTCAAAGGGGGAGG
TTGGAAATGGCGAGTTACTTATGGAGAAAATACGCGGACTATGTGTACAC
AAAGTGGGAAAGAACACTAATTTGGGACATGATAGAGCCCTACAGAAGAC
CCAAATCTTTCACACCCCTTGTCAGTATCTATGTTGCTGCTTTCTACACT
GGTGTGATTGCCGCTGCTATTAACGAGCAACTCTACAAGGAGAGGTATTG
GGAAGATCACCCTGGTGAAGCTGTGCCGCTCATGCGGCCAACATTTTATG
GTGGTCCCTGGAAGGTTTACAAGGGGGATACCCTGCCGCAAAATATGTGA
ATTGGAGTCGTGTTGAAGCTACTTCCTTTCTACTTGTGTTTATTGTACAA
AGGTCACAGGTTTTGGTGGTACGTAGTGATCAAATATTATTCTTGGTAAA
AAATAACTTTCAGGTCAAAATGATGCATAGCCAGTGAGAGCGAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA
back to top