CX675712

Overview
NameCX675712
Unique NameCX675712
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length926
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX675712 vs. ExPASy Swiss-Prot
Match: BRE1B_ARATH (E3 ubiquitin-protein ligase BRE1-like 2 OS=Arabidopsis thaliana GN=HUB2 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 2.106e-16
Identity = 46/64 (71.88%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    1 LKMEEAIQDSGRKDIKAEFRVMASALSKEMGMMEAQLNRWKETADEALSLREKAVSLKVSLSAK 192
            L+ EEAIQDS R+DIK+EF  MAS LSKEM MMEAQL RWK+TA +AL LRE+A SL+VSLS K
Sbjct:  458 LETEEAIQDSERQDIKSEFIAMASTLSKEMEMMEAQLKRWKDTAQDALYLREQAQSLRVSLSNK 521
[Close]
BLAST of CX675712 vs. ExPASy Swiss-Prot
Match: BRE1B_ORYSJ (E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa subsp. japonica GN=BRE1B PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.009e-12
Identity = 35/65 (53.85%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:    1 LKMEEAIQDSGRKDIKAEFRVMASALSKEMGMMEAQLNRWKETADEALSLREKAVSLKVSLSAKV 195
            +K EEA+QDSG+KD K E  VMA++LSKEM +++ Q+NR K+ A EAL+LRE+A  L+  L+ K+
Sbjct:  402 IKAEEALQDSGKKDFKDEIHVMAASLSKEMELLDNQMNRSKDAASEALALREEADYLRTLLAKKI 466
[Close]
BLAST of CX675712 vs. ExPASy Swiss-Prot
Match: BRE1B_ORYSI (E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa subsp. indica GN=BRE1B PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 7.009e-12
Identity = 35/65 (53.85%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:    1 LKMEEAIQDSGRKDIKAEFRVMASALSKEMGMMEAQLNRWKETADEALSLREKAVSLKVSLSAKV 195
            +K EEA+QDSG+KD K E  VMA++LSKEM +++ Q+NR K+ A EAL+LRE+A  L+  L+ K+
Sbjct:  402 IKAEEALQDSGKKDFKDEIHVMAASLSKEMELLDNQMNRSKDAASEALALREEADYLRTLLAKKI 466
The following BLAST results are available for this feature:
BLAST of CX675712 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
BRE1B_ARATH2.106e-1671.88E3 ubiquitin-protein ligase BRE1-like 2 OS=Arabido... [more]
BRE1B_ORYSJ7.009e-1253.85E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza s... [more]
BRE1B_ORYSI7.009e-1253.85E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza s... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_64C03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-64C03-E6-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675712 ID=CX675712; Name=CX675712; organism=Citrus sinensis; type=EST; length=926bp
CTCAAAATGGAAGAAGCCATTCAGGATTCAGGAAGAAAGGATATTAAAGC
AGAGTTTCGGGTGATGGCTTCTGCTTTGTCCAAGGAAATGGGAATGATGG
AAGCTCAGTTGAATCGGTGGAAGGAAACTGCGGATGAGGCCCTTTCTTTG
CGTGAAAAAGCAGTCTCTCTAAAAGTGTCCTTAAGTGCAAAGGTTTATCT
TTTCATTATGCTTGTCTTTTCTATTATCTGTTATTTATTTGAGTAAATCC
TACTGACACTCATGAGGTGTTATTATTGTAATGTTTTTCAGTCACTCATT
CCATTATTTAGCATTGACCTGGACAAATTATCCATAGTGATAGCATTTGT
AAGTAGTGTGAAATCATAGCTTACCCGTTAACTTGCTGTTGGGGAGGGTC
TACCAATTTTTATTTAAGCTCTAATAATGGCATGTGGACAACCTCAACCA
CACAATAAAACTTATTATACTATAATTTTATCAATATGGAGGGATTCAAA
TGCAAGATCAGTTTATCAAACTTGGCTTTGATACCATGTTAAGTCTGCAT
GACCTGGAAGCTAATGCTAAAGAGCCCAATAATAACATGTAATCTCTCTT
ACTTCCAAAATATTAGTCTAATTTTTTTTTTATTAAAATACGTCTGAGGA
CGTAGACAAGTCTCATCTCTCCCCTAATGCTTTGTCATCTGTGTGCACCT
AGGTACATCCATATTCCATACGATGCAATTGTTAGAATTTTTGTCGCANA
ATTTAAATTTCAAACAGTTGATGGATTGCCAAAATCACTGTCCAGAACAT
TCAAAAGATTATGAGCATTAACATCAGAGTCATGAACTTGGCTTTAGCAA
GATTCTAGCTAACACATCTTTGCATTACCTAGTTGATGATGTTCTGAATT
CAGAAAACAATATGATAAGCATTTGG
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