CX675710

Overview
NameCX675710
Unique NameCX675710
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length934
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX675710_ssr897 microsatellite CX675710_ssr897:897..908. BLAST: Citrus ESTs to Prunus persica proteins V1
CX675710_ssr785 microsatellite CX675710_ssr785:785..796. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX675710 vs. ExPASy Swiss-Prot
Match: RTF23_SCHPO (Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11 PE=4 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 3.775e-13
Identity = 34/110 (30.91%), Postives = 56/110 (50.91%), Query Frame = 1 
Query:    1 LRACVLDLGGN-WEEHLPLIEFAYNNSFHSSIGMAPFEALYG-RKCRSPIYWDEVGERKLLGPELVQITTEKIKLIRERLRTAQSRQKNYADRRRRDL-EFQVGDYVFLK 321
            L  CV     N W +H+ L++ +YNN+ HS+  M PFE ++      SP+      ++     E  Q T +  + ++E L T   + K Y D + +++ EFQ GD V +K
Sbjct: 1095 LLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKT---DENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK 1201

HSP 2 Score: 42.3578 bits (98), Expect = 3.775e-13
Identity = 22/48 (45.83%), Postives = 28/48 (58.33%), Query Frame = 2 
Query:  356 KRGKLNPRFIGPFEVLERIGPVAYRVALPPSLSRL-HNVFHVLVLRKY 496
            K  KL P F GPF VL++ GP  Y + LP S+  +  + FHV  L KY
Sbjct: 1210 KSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257
[Close]
BLAST of CX675710 vs. ExPASy Swiss-Prot
Match: RTF22_SCHPO (Retrotransposable element Tf2 155 kDa protein type 2 OS=Schizosaccharomyces pombe GN=Tf2-7 PE=2 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 3.775e-13
Identity = 34/110 (30.91%), Postives = 56/110 (50.91%), Query Frame = 1 
Query:    1 LRACVLDLGGN-WEEHLPLIEFAYNNSFHSSIGMAPFEALYG-RKCRSPIYWDEVGERKLLGPELVQITTEKIKLIRERLRTAQSRQKNYADRRRRDL-EFQVGDYVFLK 321
            L  CV     N W +H+ L++ +YNN+ HS+  M PFE ++      SP+      ++     E  Q T +  + ++E L T   + K Y D + +++ EFQ GD V +K
Sbjct: 1095 LLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKT---DENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK 1201

HSP 2 Score: 42.3578 bits (98), Expect = 3.775e-13
Identity = 22/48 (45.83%), Postives = 28/48 (58.33%), Query Frame = 2 
Query:  356 KRGKLNPRFIGPFEVLERIGPVAYRVALPPSLSRL-HNVFHVLVLRKY 496
            K  KL P F GPF VL++ GP  Y + LP S+  +  + FHV  L KY
Sbjct: 1210 KSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257
[Close]
BLAST of CX675710 vs. ExPASy Swiss-Prot
Match: RTF21_SCHPO (Retrotransposable element Tf2 155 kDa protein type 1 OS=Schizosaccharomyces pombe GN=Tf2-1 PE=2 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 3.775e-13
Identity = 34/110 (30.91%), Postives = 56/110 (50.91%), Query Frame = 1 
Query:    1 LRACVLDLGGN-WEEHLPLIEFAYNNSFHSSIGMAPFEALYG-RKCRSPIYWDEVGERKLLGPELVQITTEKIKLIRERLRTAQSRQKNYADRRRRDL-EFQVGDYVFLK 321
            L  CV     N W +H+ L++ +YNN+ HS+  M PFE ++      SP+      ++     E  Q T +  + ++E L T   + K Y D + +++ EFQ GD V +K
Sbjct: 1095 LLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKT---DENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK 1201

HSP 2 Score: 42.3578 bits (98), Expect = 3.775e-13
Identity = 22/48 (45.83%), Postives = 28/48 (58.33%), Query Frame = 2 
Query:  356 KRGKLNPRFIGPFEVLERIGPVAYRVALPPSLSRL-HNVFHVLVLRKY 496
            K  KL P F GPF VL++ GP  Y + LP S+  +  + FHV  L KY
Sbjct: 1210 KSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257
The following BLAST results are available for this feature:
BLAST of CX675710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RTF23_SCHPO3.775e-1330.91Retrotransposable element Tf2 155 kDa protein type... [more]
RTF22_SCHPO3.775e-1330.91Retrotransposable element Tf2 155 kDa protein type... [more]
RTF21_SCHPO3.775e-1330.91Retrotransposable element Tf2 155 kDa protein type... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_64C02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-64C02-E4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675710 ID=CX675710; Name=CX675710; organism=Citrus sinensis; type=EST; length=934bp
TTGCGAGCTTGTGTGTTAGATTTGGGAGGTAATTGGGAAGAACATCTACC
ACTAATAGAGTTTGCCTACAATAACAGTTTCCATTCTAGTATTGGCATGG
CACCTTTTGAAGCTCTATATGGGAGGAAGTGTAGGTCGCCGATATATTGG
GATGAGGTTGGTGAAAGGAAACTCTTGGGACCGGAATTAGTACAGATTAC
AACTGAGAAGATCAAGCTGATACGAGAGCGTCTTCGTACGGCTCAGAGTA
GGCAGAAGAACTATGCAGACCGACGTAGACGTGATTTGGAGTTCCAAGTT
GGGGACTATGTGTTCCTAAAAGTCTCACCTTGGAAGGGAGTTTTTCGTTT
TTGGGAAGAGGGGCAAGCTCAACCCTAGGTTTATTGGTCCTTTTGAGGTT
CTGGAGAGAATCGGCCCAGTGGCATATCGAGTGGCGTTACCACCAAGCCT
TTCGAGGCTTCATAATGTATTTCATGTGTTAGTATTGAGGAAGTACATGG
CTGATCCTTCTCATGTATTGGATTACCAACCTATCCAAATTGCCAATGAT
ATGTCATATGAGGAGCAACCAATGGAGATAATAGATAGGAAAGAACAAGT
TCTGAGGAGAAGGGTTATTTCTTTCGTAAAGGTTCGTTGGGCGAATCATA
CTACAGAGGAAGCCACTTGGGAGCGAGAGGATGAAATAAAGGAGAAATAT
CCTCAGCTATTTGAGTATTAGGGTAAGGCTCTAATTTCGAGGACGAAATT
TTTTTAAGGGAGGGAGAAGTTGTAACGCCCAATTTTTATTTATTTATTTT
TCCTCTTTTGCCCTTATTAAATTGAGTAGGATAGTTATTATTGAGTGTTT
GTGTGTGAGTAAAATTTATCGGATAATTTTAAATAAGTTACGTAAGTTAT
TATTATTATTTTTAAATATTTATTAATTACCAAG
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