CX675708

Overview
NameCX675708
Unique NameCX675708
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675708 vs. ExPASy Swiss-Prot
Match: CH62_CUCMA (Chaperonin CPN60-2, mitochondrial OS=Cucurbita maxima GN=CPN60-2 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.297e-38
Identity = 83/100 (83.00%), Postives = 86/100 (86.00%), Query Frame = -3
Query:  344 FDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAP 643
            FDQKIGVQIIQNALKTPVHTI            GKLLEQDN DLGYDAAKGEYVDM+K+GIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPK+EKE P
Sbjct:  465 FDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLEQDNPDLGYDAAKGEYVDMIKAGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKDEKEVP 564          
BLAST of CX675708 vs. ExPASy Swiss-Prot
Match: CH61_MAIZE (Chaperonin CPN60-1, mitochondrial OS=Zea mays GN=CPN60I PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 4.484e-37
Identity = 81/100 (81.00%), Postives = 86/100 (86.00%), Query Frame = -3
Query:  344 FDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAP 643
            FDQKIGVQIIQNALKTPVHTI            GKLLEQ+NTDLGYDAAKGEYVDMVK+GIIDPLKVIRTALVDAASVSSLMTTTE+I+VE+PKEE  AP
Sbjct:  467 FDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLEQENTDLGYDAAKGEYVDMVKTGIIDPLKVIRTALVDAASVSSLMTTTESIIVEIPKEEAPAP 566          
BLAST of CX675708 vs. ExPASy Swiss-Prot
Match: CH61_CUCMA (Chaperonin CPN60-1, mitochondrial OS=Cucurbita maxima GN=CPN60-1 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.226e-36
Identity = 80/100 (80.00%), Postives = 84/100 (84.00%), Query Frame = -3
Query:  344 FDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAP 643
            FDQKIGVQIIQNALKTPVHTI            GKLLEQD+ DLGYDAAKGEYVDMVK+GIIDPLKVIRTALVDAASVSSLMTTTE +VVELPK+E E P
Sbjct:  465 FDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLEQDDPDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAASVSSLMTTTEVVVVELPKDENEVP 564          
BLAST of CX675708 vs. ExPASy Swiss-Prot
Match: CH62_MAIZE (Chaperonin CPN60-2, mitochondrial OS=Zea mays GN=CPN60II PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.475e-36
Identity = 80/100 (80.00%), Postives = 84/100 (84.00%), Query Frame = -3
Query:  344 FDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAP 643
            FDQKIGVQIIQNALKTPVHTI            GKLLEQ NTDLGYDAAK EYVDMVK+GIIDPLKVIRTALVDAASVSSLMTTTE+I+VE+PKEE  AP
Sbjct:  467 FDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLEQGNTDLGYDAAKDEYVDMVKAGIIDPLKVIRTALVDAASVSSLMTTTESIIVEIPKEEAPAP 566          
BLAST of CX675708 vs. ExPASy Swiss-Prot
Match: CH60A_ARATH (Chaperonin CPN60, mitochondrial OS=Arabidopsis thaliana GN=CPN60 PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.461e-35
Identity = 78/99 (78.79%), Postives = 85/99 (85.86%), Query Frame = -3
Query:  347 FDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEA 643
            FDQKIGVQIIQNALKTPV+TI            GKLLEQDN DLGYDAAKGEYVDMVK+GIIDPLKVIRTALVDAASVSSL+TTTEA+VV+LPK+E E+
Sbjct:  464 FDQKIGVQIIQNALKTPVYTIASNAGVEGAVIVGKLLEQDNPDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAASVSSLLTTTEAVVVDLPKDESES 562          
BLAST of CX675708 vs. ExPASy Swiss-Prot
Match: CH60B_ARATH (Chaperonin CPN60-like 1, mitochondrial OS=Arabidopsis thaliana GN=At2g33210 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.061e-34
Identity = 75/100 (75.00%), Postives = 83/100 (83.00%), Query Frame = -3
Query:  344 FDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAP 643
            FDQKIGVQIIQNALKTPV+TI            GKLLEQDN DLGYDAAKGEYVDM+K+GIIDPLKVIRTALVDAASVSSL+TTTEA+V E+P +E  +P
Sbjct:  465 FDQKIGVQIIQNALKTPVYTIASNAGVEGAVVVGKLLEQDNPDLGYDAAKGEYVDMIKAGIIDPLKVIRTALVDAASVSSLLTTTEAVVTEIPTKEVASP 564          
BLAST of CX675708 vs. ExPASy Swiss-Prot
Match: CH60_BRANA (Chaperonin CPN60, mitochondrial OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.131e-33
Identity = 74/100 (74.00%), Postives = 81/100 (81.00%), Query Frame = -3
Query:  344 FDQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAP 643
            FD KIGVQIIQNALKTPV+TI            GKLLE DN DLGYDAAKGEYVDMVKSGIIDP+KVIRTALVDAASVSSL+TTTEA+V E+P +E  +P
Sbjct:  468 FDHKIGVQIIQNALKTPVYTIASNAGVEGAVIVGKLLESDNPDLGYDAAKGEYVDMVKSGIIDPVKVIRTALVDAASVSSLLTTTEAVVTEIPTKEDASP 567          
BLAST of CX675708 vs. ExPASy Swiss-Prot
Match: CH60C_ARATH (Chaperonin CPN60-like 2, mitochondrial OS=Arabidopsis thaliana GN=At3g13860 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.267e-23
Identity = 61/99 (61.62%), Postives = 72/99 (72.73%), Query Frame = -3
Query:  344 DQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAP 640
            DQ+ GVQI+QNALK P  TI            GKLLEQD+ + G+DAAKG+YVDMVK+GIIDP+KVIRTAL DAASVS L+TTTEA V  L K ++  P
Sbjct:  465 DQRRGVQIVQNALKAPAFTIAANAGYDGSLVVGKLLEQDDCNFGFDAAKGKYVDMVKAGIIDPVKVIRTALTDAASVSLLLTTTEASV--LVKADENTP 561          
BLAST of CX675708 vs. ExPASy Swiss-Prot
Match: CH60_CRIGR (60 kDa heat shock protein, mitochondrial OS=Cricetulus griseus GN=HSPD1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.078e-22
Identity = 52/97 (53.61%), Postives = 71/97 (73.20%), Query Frame = -3
Query:  350 DQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKE 640
            DQKIG++II+ ALK P  TI             K+L Q ++++GYDA  G++V+MV+ GIIDP KV+RTAL+DAA V+SL+TT EA+V E+PKEEK+
Sbjct:  460 DQKIGIEIIKRALKIPAMTIAKNAGVEGSLIVEKIL-QSSSEIGYDAMLGDFVNMVEKGIIDPTKVVRTALLDAAGVASLLTTAEAVVTEIPKEEKD 555          
BLAST of CX675708 vs. ExPASy Swiss-Prot
Match: CH60_RAT (60 kDa heat shock protein, mitochondrial OS=Rattus norvegicus GN=Hspd1 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.186e-21
Identity = 52/97 (53.61%), Postives = 71/97 (73.20%), Query Frame = -3
Query:  350 DQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKE 640
            DQKIG++II+ ALK P  TI             K+L Q ++++GYDA  G++V+MV+ GIIDP KV+RTAL+DAA V+SL+TT EA+V E+PKEEK+
Sbjct:  460 DQKIGIEIIKRALKIPAMTIAKNAGVEGSLIVEKIL-QSSSEVGYDAMLGDFVNMVEKGIIDPTKVVRTALLDAAGVASLLTTAEAVVTEIPKEEKD 555          
The following BLAST results are available for this feature:
BLAST of CX675708 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH62_CUCMA5.297e-3883.00Chaperonin CPN60-2, mitochondrial OS=Cucurbita max... [more]
CH61_MAIZE4.484e-3781.00Chaperonin CPN60-1, mitochondrial OS=Zea mays GN=C... [more]
CH61_CUCMA2.226e-3680.00Chaperonin CPN60-1, mitochondrial OS=Cucurbita max... [more]
CH62_MAIZE6.475e-3680.00Chaperonin CPN60-2, mitochondrial OS=Zea mays GN=C... [more]
CH60A_ARATH2.461e-3578.79Chaperonin CPN60, mitochondrial OS=Arabidopsis tha... [more]
CH60B_ARATH6.061e-3475.00Chaperonin CPN60-like 1, mitochondrial OS=Arabidop... [more]
CH60_BRANA5.131e-3374.00Chaperonin CPN60, mitochondrial OS=Brassica napus ... [more]
CH60C_ARATH1.267e-2361.62Chaperonin CPN60-like 2, mitochondrial OS=Arabidop... [more]
CH60_CRIGR9.078e-2253.6160 kDa heat shock protein, mitochondrial OS=Cricet... [more]
CH60_RAT1.186e-2153.6160 kDa heat shock protein, mitochondrial OS=Rattus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_64C01_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-64C01-E2-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675708 ID=CX675708; Name=CX675708; organism=Citrus sinensis; type=EST; length=645bp
TTTTTTTTTTTTTTTTTGCAAGGAAGATATATTTTATTTTGAAATAAAAT
ACAGTTCAATTAAAAACCAACCAATCATCCAAGTGGATTGCCAAACGACC
TAAATCAGCAATGTTTTATCCTAAATTGCCAAACGACCTAAATGCCTACC
TCTCACTATGATTACAAGGATGCCTTATGATTGACACAATTGAGACTCAT
TAAGCTGGCCACAAAATCCTAACATTCAGATTGTATGTTGATTATGGAAC
CCCAAAAAAAAAAAAAAGGGACAATCAGTTAAGCATTCTACTGGGATTTC
AATAGTCCATGCCGCCCATTCCGCCCATGCCACCCATGCCTCCCGGAGCT
TCCTTCTCCTCCTTAGGCAGCTCAACAACAATAGCTTCAGTTGTGGTCAT
TAAAGATGATACACTTGCAGCATCAACCAAAGCAGTTCTGATTACTTTCA
ATGGATCGATAATTCCAGATTTGACCATATCAACATACTCACCTTTGGCG
GCATCATACCCAAGGTCAGTGTTGTCCTGCTCCAATAGCTTACCAACCAC
AACAGCCCCCTCAACTCCTGCATTAACAGCAATTGTGTGCACTGGTGTCT
TTAGAGCATTCTGAATAATCTGAACACCAATCTTCTGGTCAAAGT
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