CN188288

Overview
NameCN188288
Unique NameCN188288
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188288 vs. ExPASy Swiss-Prot
Match: Y4523_ARATH (Probable serine/threonine-protein kinase At4g35230 OS=Arabidopsis thaliana GN=At4g35230 PE=1 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 2.113e-81
Identity = 142/167 (85.03%), Postives = 157/167 (94.01%), Query Frame = -2
Query:  215 RHEEAPPTPQPPLSPMGDACSRMDLTAIHQILVMTHYKDDEGTNELSFQEWTQQMRDMLEARKRGDVAFREKEFKTAVDCYSQFIDVGTMVSPTVYARRSLCHLMCDQPDAALRDAMQAQCVYPDWSTAFYMQAVALAKLDMHKDAADMLKEAASLEEKRQRSGRGS 715
            + EEAP TPQ PLSP+G+ACSRMDLTAIHQILVMTHY+DDEGTNELSFQEWTQQM+DML+ARKRGD +FREK+FKTA+DCYSQFIDVGTMVSPTV+ RRSLC+L+CDQPDAALRDAMQAQCVYPDW TAFYMQ+VALAKL+M+ DAADML EAA LEEKRQR GRGS
Sbjct:  346 KQEEAPSTPQRPLSPLGEACSRMDLTAIHQILVMTHYRDDEGTNELSFQEWTQQMKDMLDARKRGDQSFREKDFKTAIDCYSQFIDVGTMVSPTVFGRRSLCYLLCDQPDAALRDAMQAQCVYPDWPTAFYMQSVALAKLNMNTDAADMLNEAAQLEEKRQRGGRGS 512          
BLAST of CN188288 vs. ExPASy Swiss-Prot
Match: SSP_ARATH (Probable inactive receptor-like kinase SSP OS=Arabidopsis thaliana GN=SSP PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.448e-47
Identity = 88/159 (55.35%), Postives = 121/159 (76.10%), Query Frame = -2
Query:  236 HEEAPPTPQPPLSPMGDACSRMDLTAIHQILVMTHYKDDEGTNELSFQEWTQQMRDMLEARKRGDVAFREKEFKTAVDCYSQFIDVGTMVSPTVYARRSLCHLMCDQPDAALRDAMQAQCVYPDWSTAFYMQAVALAKLDMHKDAADMLKEAASLEEKR 712
            ++E   +    LSP+G+AC RMDL +IH ILV+  Y DD+   ELSF+EW Q+++++ + R+ GD AF E++FKTA+ CYSQF++  ++V P+VYARRSL +L CD+P+ AL D M AQ V+PDW TAFY+Q+VALAKLDM+ D+AD LKEAA LE K+
Sbjct:  307 NQEKDASSSSNLSPLGEACLRMDLASIHSILVLAGYDDDKDIIELSFEEWIQEVKELQDVRRNGDRAFVEQDFKTAIACYSQFVEERSLVYPSVYARRSLSYLFCDEPEKALLDGMHAQGVFPDWPTAFYLQSVALAKLDMNTDSADTLKEAALLEVKK 465          
BLAST of CN188288 vs. ExPASy Swiss-Prot
Match: Y5126_ARATH (Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.339e-43
Identity = 89/149 (59.73%), Postives = 109/149 (73.15%), Query Frame = -2
Query:  236 LSPMGDACSRMDLTAIHQILVMTHYKDDEG-TNELSFQEWTQQMRDMLEARKRGDVAFREKEFKTAVDCYSQFIDVGTMVSPTVYARRSLCHLMCDQPDAALRDAMQAQCVYPDWSTAFYMQAVALAKLDMHKDAADMLKEAASLEEKR 679
            LSP+G+AC R DLTAIH+I+    YKDDEG T ELSFQ WT QM+D L  +K+GD AFR K+F  A++CYSQFI+VGTM SPTV+AR+SLC+LM D P  AL +AMQAQ + P W  A Y+QAVAL+ L    +A   LK+ A LE KR
Sbjct:  336 LSPLGEACLRSDLTAIHEIIEKLGYKDDEGATTELSFQMWTDQMQDTLVFKKKGDSAFRHKDFAKAIECYSQFIEVGTMGSPTVHARQSLCYLMNDMPREALNNAMQAQVISPAWHIASYLQAVALSALGQENEAHTALKDGAMLESKR 484          
The following BLAST results are available for this feature:
BLAST of CN188288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y4523_ARATH2.113e-8185.03Probable serine/threonine-protein kinase At4g35230... [more]
SSP_ARATH4.448e-4755.35Probable inactive receptor-like kinase SSP OS=Arab... [more]
Y5126_ARATH1.339e-4359.73Probable serine/threonine-protein kinase At5g41260... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005M16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005M16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188288 ID=CN188288; Name=CN188288; organism=Citrus sinensis; type=EST; length=719bp
TTTTTTTTTTTTTTTTTAATCATTTGAACGAAATTATTAAAAAGAAAAAA
ATAGCACAACAGACAAGTACAGAACAAGTCTGTCCTCCCTCTATGGTACA
TTTTGGAAGAAAACCATATTCCTAATTTCAAATTACATAAAGCCCAAATG
CTTTCTTACAACCACCACAACAATTGATTGAACACAGGCTACAAAAGAAT
ATTACAGCTTCTCAAGAACCTCTCCCACTCCGTTGCCTTTTTTCTTCTAA
TGAGGCAGCCTCCTTTAACATATCAGCTGCATCCTTGTGCATGTCCAACT
TCGCAAGGGCAACAGCCTGCATGTAAAATGCTGTGGACCAGTCGGGATAA
ACACATTGTGCTTGCATTGCATCTCTAAGTGCAGCATCTGGCTGGTCACA
CATTAAATGACAAAGACTTCTCCGTGCATAGACAGTTGGTGAAACCATGG
TTCCCACGTCTATAAACTGAGAATAGCAATCTACGGCAGTTTTAAATTCT
TTCTCTCGGAATGCCACATCCCCACGCTTTCTAGCCTCCAACATATCTCT
CATTTGTTGGGTCCACTCTTGAAAAGACAACTCATTGGTTCCTTCATCAT
CTTTGTAGTGTGTCATCACCAAGATCTGGTGGATGGCTGTGAGGTCCATC
CGTGAACAAGCATCACCCATTGGAGAAAGAGGGGGCTGTGGAGTAGGAGG
GGCTTCCTCATGCCTTGGA
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