CK939619

Overview
NameCK939619
Unique NameCK939619
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK939619_ssr15 microsatellite CK939619_ssr15:15..26. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2572 contig Csv1_Contig2572:12..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939619 vs. ExPASy Swiss-Prot
Match: RL142_ARATH (60S ribosomal protein L14-2 OS=Arabidopsis thaliana GN=RPL14B PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.264e-59
Identity = 117/134 (87.31%), Postives = 124/134 (92.54%), Query Frame = 3
Query:   66 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAPDMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVNNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKKENAA 467
            M FKRYVEIGRVALVNYG+D+GKLVVIVDV+DQNRALVDAPDM R QMNFKRLSLTDI IDINRVP+KK+LIEAMEKADV NKWE SSWGRKLIVQKRRA LNDFDRFK+MLAKIKK G+VRQELAKLKKE  A
Sbjct:    1 MGFKRYVEIGRVALVNYGEDHGKLVVIVDVVDQNRALVDAPDMERIQMNFKRLSLTDIVIDINRVPKKKALIEAMEKADVKNKWEKSSWGRKLIVQKRRANLNDFDRFKIMLAKIKKAGVVRQELAKLKKEITA 134          
BLAST of CK939619 vs. ExPASy Swiss-Prot
Match: RL141_ARATH (60S ribosomal protein L14-1 OS=Arabidopsis thaliana GN=RPL14A PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.815e-59
Identity = 116/134 (86.57%), Postives = 124/134 (92.54%), Query Frame = 3
Query:   66 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAPDMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVNNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKKENAA 467
            M FKR+VEIGRVALVNYG+DYGKLVVIVDV+DQNRALVDAPDM R QMN KRLSLTDI IDINRVP+KK LIEAMEKADV NKWE SSWGRKLIVQKRRAALNDFDRFK+MLAKIK+ G+VRQELAKLK+E AA
Sbjct:    1 MGFKRFVEIGRVALVNYGEDYGKLVVIVDVVDQNRALVDAPDMERIQMNLKRLSLTDIVIDINRVPKKKVLIEAMEKADVKNKWEKSSWGRKLIVQKRRAALNDFDRFKIMLAKIKRAGIVRQELAKLKREIAA 134          
BLAST of CK939619 vs. ExPASy Swiss-Prot
Match: RL14_PEA (Probable 60S ribosomal protein L14 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.224e-54
Identity = 106/133 (79.70%), Postives = 118/133 (88.72%), Query Frame = 3
Query:   66 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAPDMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVNNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKKENA 464
            MPFKR+VEIGRVAL+NYGKDYG+LVVIVDV+DQ RALVDAPDM RS +NFKRLSLTD+KIDI RVP+KK LI+A+E ADV NKW  SSWGRKLIV+K RAALNDFDRFK+MLAKIK+   VRQELAKLKK  A
Sbjct:    1 MPFKRFVEIGRVALINYGKDYGRLVVIVDVIDQTRALVDAPDMERSPINFKRLSLTDLKIDIKRVPKKKDLIKALEAADVKNKWAKSSWGRKLIVKKTRAALNDFDRFKIMLAKIKRAAGVRQELAKLKKTAA 133          
BLAST of CK939619 vs. ExPASy Swiss-Prot
Match: RL14_MOUSE (60S ribosomal protein L14 OS=Mus musculus GN=Rpl14 PE=2 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 2.176e-27
Identity = 61/132 (46.21%), Postives = 89/132 (67.42%), Query Frame = 3
Query:   66 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVNNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKK 455
            M F+RYVE+GRVA +++G   GKLV IVDV+DQNRALVD P   + R  M FK + LTD  +      R+K + +A EKAD+N KW  + W +K+  ++R+A + DFDRFK+M AK  +  +++ E+ KL++
Sbjct:    1 MVFRRYVEVGRVAYISFGPHAGKLVAIVDVIDQNRALVDGPCTRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIDARERKAKMTDFDRFKVMKAKKMRNRIIKTEVKKLQR 132          
BLAST of CK939619 vs. ExPASy Swiss-Prot
Match: RL14_RAT (60S ribosomal protein L14 OS=Rattus norvegicus GN=Rpl14 PE=1 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 6.330e-27
Identity = 60/132 (45.45%), Postives = 89/132 (67.42%), Query Frame = 3
Query:   66 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVNNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKK 455
            M F+R+VE+GRVA +++G   GKLV IVDV+DQNRALVD P   + R  M FK + LTD  +      R+K + +A EKAD+N KW  + W +K+  ++R+A + DFDRFK+M AK  +  +++ E+ KL++
Sbjct:    1 MVFRRFVEVGRVAYISFGPHAGKLVAIVDVIDQNRALVDGPCTRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIDARERKAKMTDFDRFKVMKAKKMRNRIIKTEVKKLQR 132          
BLAST of CK939619 vs. ExPASy Swiss-Prot
Match: RL14_LUMRU (60S ribosomal protein L14 OS=Lumbricus rubellus GN=RPL14 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.330e-27
Identity = 63/132 (47.73%), Postives = 85/132 (64.39%), Query Frame = 3
Query:   66 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVNNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKK 455
            M F+R+VEIGRVA   YG D GKLV IVDV+DQNRALVD P   + R  MNFK L LT++K       +   + +A EK +++ KWE S   +K+  +++R  L DF+RFKLM AK  +  L++ E  KL+K
Sbjct:    1 MSFRRFVEIGRVARAVYGPDQGKLVAIVDVIDQNRALVDGPCTHVARKSMNFKELELTNLKAKFPHSAKTGVVKKAWEKDEISKKWEESHLAKKIAAKEKRKTLTDFERFKLMKAKQARNRLIKIEFGKLRK 132          
BLAST of CK939619 vs. ExPASy Swiss-Prot
Match: RL14_HUMAN (60S ribosomal protein L14 OS=Homo sapiens GN=RPL14 PE=1 SV=4)

HSP 1 Score: 120.939 bits (302), Expect = 6.330e-27
Identity = 60/132 (45.45%), Postives = 88/132 (66.67%), Query Frame = 3
Query:   66 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVNNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKK 455
            M F+R+VE+GRVA V++G   GKLV IVDV+DQNRALVD P   + R  M FK + LTD  +       +K + +A +KAD+N KW  + W +K+  ++R+A + DFDRFK+M AK  +  +++ E+ KL+K
Sbjct:    1 MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSAHQKYVRQAWQKADINTKWAATRWAKKIEARERKAKMTDFDRFKVMKAKKMRNRIIKNEVKKLQK 132          
BLAST of CK939619 vs. ExPASy Swiss-Prot
Match: RL14_PIG (60S ribosomal protein L14 OS=Sus scrofa GN=RPL14 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.842e-26
Identity = 60/132 (45.45%), Postives = 89/132 (67.42%), Query Frame = 3
Query:   66 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVNNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKK 455
            M F+R+VE+GRVA V++G   GKLV IVDV+DQNRALVD P   + R  M FK + LTD  +      R+K + +A EKAD+N KW  + W +K+  ++++A + DFDR+K+M A+  +  L++ E+ KL+K
Sbjct:    1 MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINAKWAATRWAKKIEAREKKAKMTDFDRYKVMKARKMRNRLIKLEVKKLQK 132          
BLAST of CK939619 vs. ExPASy Swiss-Prot
Match: RL14_GRIJA (60S ribosomal protein L14 OS=Griffithsia japonica GN=RPL14 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.842e-26
Identity = 67/134 (50.00%), Postives = 91/134 (67.91%), Query Frame = 3
Query:   66 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAPD--MVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEK---ADVNNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLK 452
            M F R+VE GRVALV+YG+   KLVVIVD+LDQNR LVD+P   + R  +N KR++LT IK+D   + R   + E   K   A V+  +  S WG+KL  +++RAAL+DF RFK+M+A++KK   +  ELAKLK
Sbjct:    1 MTFTRFVEAGRVALVSYGEHLNKLVVIVDILDQNRILVDSPSHGLKRKVINVKRIALTSIKVD--DIARGAPVAEVKSKYTAAKVDETFAASGWGKKLAKREKRAALDDFGRFKVMVARMKKSKAINAELAKLK 132          
BLAST of CK939619 vs. ExPASy Swiss-Prot
Match: RL14_BOVIN (60S ribosomal protein L14 OS=Bos taurus GN=RPL14 PE=2 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 2.405e-26
Identity = 60/132 (45.45%), Postives = 89/132 (67.42%), Query Frame = 3
Query:   66 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVNNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKK 455
            M F+R+VE+GRVA V++G   GKLV IVDV+DQNRALVD P   + R  M FK + LTD  +      R+K + +A EKAD+N KW  + W +K+  ++++A + DFDR+K+M A+  +  L++ E+ KL+K
Sbjct:    1 MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINAKWAATRWAKKIEAREKKAKMTDFDRYKVMKARKMRNRLIKIEVKKLQK 132          
The following BLAST results are available for this feature:
BLAST of CK939619 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RL142_ARATH1.264e-5987.3160S ribosomal protein L14-2 OS=Arabidopsis thalian... [more]
RL141_ARATH2.815e-5986.5760S ribosomal protein L14-1 OS=Arabidopsis thalian... [more]
RL14_PEA1.224e-5479.70Probable 60S ribosomal protein L14 OS=Pisum sativu... [more]
RL14_MOUSE2.176e-2746.2160S ribosomal protein L14 OS=Mus musculus GN=Rpl14... [more]
RL14_RAT6.330e-2745.4560S ribosomal protein L14 OS=Rattus norvegicus GN=... [more]
RL14_LUMRU6.330e-2747.7360S ribosomal protein L14 OS=Lumbricus rubellus GN... [more]
RL14_HUMAN6.330e-2745.4560S ribosomal protein L14 OS=Homo sapiens GN=RPL14... [more]
RL14_PIG1.842e-2645.4560S ribosomal protein L14 OS=Sus scrofa GN=RPL14 P... [more]
RL14_GRIJA1.842e-2650.0060S ribosomal protein L14 OS=Griffithsia japonica ... [more]
RL14_BOVIN2.405e-2645.4560S ribosomal protein L14 OS=Bos taurus GN=RPL14 P... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004747_H06 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIIF_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939619 ID=CK939619; Name=CK939619; organism=Citrus sinensis; type=EST; length=696bp
GGGGGCCTCTTGCCTCATTCATTCATCTCCTCGCTCCTCCGGCAGAGCCT
TGAATATCTTCGAAAATGCCGTTCAAGAGGTACGTGGAGATAGGAAGAGT
TGCTCTCGTTAATTACGGCAAGGACTATGGGAAGCTTGTGGTCATCGTCG
ATGTCCTTGATCAAAACAGGGCTCTTGTTGATGCCCCTGATATGGTGAGG
AGCCAAATGAACTTCAAGAGGCTTTCTCTCACGGATATTAAGATTGACAT
CAATCGAGTTCCCAGGAAGAAGTCTTTGATTGAAGCCATGGAGAAGGCTG
ATGTGAATAACAAATGGGAAAACAGCTCCTGGGGCAGGAAGCTGATTGTC
CAGAAAAGGAGAGCGGCACTGAATGATTTTGATAGGTTCAAGCTCATGTT
GGCAAAGATCAAGAAGGGTGGACTTGTTCGACAGGAGCTTGCAAAACTCA
AGAAGGAGAATGCAGCATAGAATTTCTCTCTTGTGTTCCCCTTTCTGGTT
TTTAGTTCTTACAGCTTCAATTTGATTCTATTAATGTATTGATTAATATG
AGAAAACATCAGCTTGGCGTTTTTGGGTTATTTGTTATTTGGACAGAATT
TTTAGATATTTTCGTAATGTCCTTTCTGTTATAATCTGATCTCAAGCTTT
GTTGTTCGGTAACCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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