CK939605

Overview
NameCK939605
Unique NameCK939605
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2199 contig Csv1_Contig2199:1..674. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939605 vs. ExPASy Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.192e-21
Identity = 55/113 (48.67%), Postives = 67/113 (59.29%), Query Frame = 2
Query:  113 KDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAY 451
            K K E  +     A  K+ A  KA + + K       A KDPNKPKRPPSAFFVF+EEFRKV+ +EHP  KAVSAVGKA G KWK+++D              ++YEK M AY
Sbjct:    5 KSKTESKRADPKLAVNKKGAATKARKPAGKG-----KAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAY 112          
BLAST of CK939605 vs. ExPASy Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.738e-21
Identity = 51/107 (47.66%), Postives = 66/107 (61.68%), Query Frame = 2
Query:  131 VKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAY 451
            +K  + +A    K  +K   +  K+TK    A KDPNKPKRPPSAFFVF+E+FRK YK++HPN K+V+ VGKAGG+KWK LT                +YEK + AY
Sbjct:    1 MKGGKSKAKSDNKLAVKKQAADTKKTKK---AVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAY 104          
BLAST of CK939605 vs. ExPASy Swiss-Prot
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.736e-18
Identity = 53/125 (42.40%), Postives = 69/125 (55.20%), Query Frame = 2
Query:   80 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKS-AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAY 451
            MK  + KGA K D    VK                S+ + K  K  K  A KDPNKPKR PSAFFVF+EEFRK +K+++P  K+V+AVGKA G++WKSL++              L+Y K + AY
Sbjct:    1 MKGAKSKGAAKADAKLAVK----------------SKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAY 109          
BLAST of CK939605 vs. ExPASy Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.618e-18
Identity = 48/105 (45.71%), Postives = 64/105 (60.95%), Query Frame = 2
Query:  143 EDRAAGKRKAVLKASRSSNKRTKNVKSAK--KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAY 451
            E + A  + AV K   ++ K  K     K  KDPNKPKRPPSAFFVF+ +FR+ YK++HPN K+V+AVGKA GE+WKSL++               +YE  + AY
Sbjct:    9 ESKKAETKLAVNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAY 113          
BLAST of CK939605 vs. ExPASy Swiss-Prot
Match: HMGL_WHEAT (HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.277e-17
Identity = 51/124 (41.13%), Postives = 66/124 (53.23%), Query Frame = 2
Query:   80 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXXLDYEKLMTAY 451
            MK  + KGA K D    VK     + G  K   K  +           A KDPNKPKR PSAFFVF+ EFR+ +KQ++P  K+V+AVGKA GE+WKSL++               +Y K + AY
Sbjct:    1 MKGAKSKGAAKADAKLAVK-----SKGAEKPAAKGKKGK---------AGKDPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAY 110          
The following BLAST results are available for this feature:
BLAST of CK939605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
HMGL_SOYBN2.192e-2148.67HMG1/2-like protein OS=Glycine max PE=2 SV=1[more]
HMGL_IPONI3.738e-2147.66HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1[more]
MNB1B_MAIZE1.736e-1842.40DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=... [more]
HMGL_VICFA8.618e-1845.71HMG1/2-like protein OS=Vicia faba PE=2 SV=1[more]
HMGL_WHEAT4.277e-1741.13HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionCGF1004748_B12 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IVF_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939605 ID=CK939605; Name=CK939605; organism=Citrus sinensis; type=EST; length=674bp
GGGGAAGCGCCCTGTTTTTCGGCTCTGCTGTTGTGTTCTTCGCTTCTCTT
CTATCCGTCCAGGCATATCGCTTCTGAAAATGAAGGTTACCAGGGGCAAA
GGAGCAGTCAAGAAGGACAAAAATGAAGTAGTGAAGCCTGTTGAGGACAG
AGCTGCAGGAAAGCGAAAGGCTGTGCTTAAAGCTAGTAGGAGTAGCAACA
AGCGCACCAAGAATGTCAAGTCAGCAAAGAAAGACCCTAACAAGCCGAAG
AGGCCTCCTAGTGCTTTTTTTGTTTTCCTAGAAGAGTTCAGAAAGGTTTA
CAAACAAGAGCATCCCAATGTTAAAGCTGTCTCAGCTGTGGGGAAAGCTG
GGGGAGAGAAATGGAAGTCGCTGACTGATGCAGAAAAAGCCCCATTTGAA
GCAAAAGCAGCAAAAAGGAAATTGGATTATGAAAAGCTGATGACAGCATA
CGACAAGAAACAGGAAAGTACTGAAGATGAAGATGAAGAGGAGTCTGAGA
AGTCAAAATCCGAGGTGCATGACGACGATGATGATGAAGAACTTGAAGAG
GAGGATGAAGAGGAGGACGACGACTAGATTCAGGAGCGCCACTGGGTATA
GTTCCTTTGCTTTATCCAGAAAAAATCCTGGACGTTGTATGACCATGCAG
TTGGGTTATTTTGTGTTTTNNNNT
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