CK939596

Overview
NameCK939596
Unique NameCK939596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length447
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7533 contig Csv1_Contig7533:513..958. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939596 vs. ExPASy Swiss-Prot
Match: ERD2_DROME (ER lumen protein retaining receptor OS=Drosophila melanogaster GN=KdelR PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.644e-15
Identity = 46/132 (34.85%), Postives = 76/132 (57.58%), Query Frame = 1
Query:    7 IYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLISEIVQTFILADFCYYYVKSVFGGQLVLRLPS 402
            I +++VPCA+L+L+I+   +   +  + W F +YLE+V++LPQL ++  T   E  T+HY+FALG  R L   +WV + +    + L+A+  G          +VQT +  DF Y Y+  V  G+  L+LP+
Sbjct:   95 IEFLLVPCALLSLVINHEFT---VMEVLWTFSIYLESVAILPQLFLVSRTGEAESITSHYLFALGSYRALYLLNWVYRYMVESHYDLIAIFAG----------VVQTVLYCDFFYLYITKVLKGK-KLQLPA 212          
BLAST of CK939596 vs. ExPASy Swiss-Prot
Match: ERD2_DICDI (ER lumen protein retaining receptor OS=Dictyostelium discoideum GN=kdelr PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.644e-15
Identity = 44/132 (33.33%), Postives = 75/132 (56.82%), Query Frame = 1
Query:    7 IYYVVVPCAVLALLIHPSTSHNILN---RIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLISEIVQTFILADFCYYYVKS-VFGGQLVL 390
            I Y++  CA+L+L+ +  T+  I +    I W F +YLE++++LPQL ++Q T  VE  T++Y+  LG  R     +W+ ++            Y     + ++S ++QT + ADF YYY KS ++G +LVL
Sbjct:   95 IVYLIASCAILSLITYDKTTIGIYSTFLEILWTFSIYLESIAILPQLILLQRTGEVEALTSNYIVLLGGYRAFYLFNWIYRI----------TFYNWSGKIEMLSGLLQTILYADFFYYYAKSRMYGKKLVL 216          
BLAST of CK939596 vs. ExPASy Swiss-Prot
Match: ERD22_CAEEL (Putative ER lumen protein retaining receptor C28H8.4 OS=Caenorhabditis elegans GN=C28H8.4 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 6.066e-15
Identity = 48/129 (37.21%), Postives = 72/129 (55.81%), Query Frame = 1
Query:   16 VVVPCAVLALLIHPSTSHNILN-RIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLISEIVQTFILADFCYYYVKSVFGGQLVLRLP 399
            ++VP A+LALLI+    H+     + W F +YLEAV++LPQL ++Q+T   E  TAHY+FALG  R L   +W+ +                +  +V+++ IVQT + ADF Y YV  V   +  + LP
Sbjct:   98 LIVPAAILALLIN----HDFAPFELLWTFSIYLEAVAILPQLFLLQSTGSAEVITAHYLFALGSYRALYIFNWIYRYYTE----------DYFDPIVVVAGIVQTVLYADFFYLYVTRVVQTRKGMELP 212          
BLAST of CK939596 vs. ExPASy Swiss-Prot
Match: ERD2_ENTHI (ER lumen protein retaining receptor OS=Entamoeba histolytica GN=ERD2 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 7.922e-15
Identity = 41/129 (31.78%), Postives = 71/129 (55.04%), Query Frame = 1
Query:    7 IYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLISEIVQTFILADFCYYYVKS-VFGGQLVL 390
            ++Y++VPC VLA +    T    +  I W F ++LEAV++LPQ+ ++++T  VE   + Y+F LG+ R L   +W+ +    + +         W  +  I   +QT +  ++ YYY+KS V G + VL
Sbjct:   97 VWYLIVPCIVLAFIF---TEDYSITEICWTFSIFLEAVAILPQILLLRSTGEVENLNSQYIFCLGLYRALYIINWIYRYATEQSY---------WSPLTWICGSIQTLLYVEYFYYYIKSRVEGTKFVL 213          
BLAST of CK939596 vs. ExPASy Swiss-Prot
Match: ERD2_CAEEL (ER lumen protein retaining receptor OS=Caenorhabditis elegans GN=erd-2 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.035e-14
Identity = 44/121 (36.36%), Postives = 66/121 (54.55%), Query Frame = 1
Query:    7 IYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLISEIVQTFILADFCYYYVKSV 369
            I ++V+P  +LALLI+      I   + W F +YLEAV+++PQL ++  T   E  TAHY+FALG  RFL   +WV +                +  + +++ IVQT + ADF Y Y+  V
Sbjct:   95 IEFLVIPSMILALLINHEF---IFMEVMWTFSIYLEAVAIMPQLFMLSRTGNAETITAHYLFALGSYRFLYILNWVYRYYTE----------SFFDPISVVAGIVQTVLYADFFYLYITRV 202          
BLAST of CK939596 vs. ExPASy Swiss-Prot
Match: ERD21_RAT (ER lumen protein retaining receptor 1 OS=Rattus norvegicus GN=Kdelr1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.765e-14
Identity = 50/133 (37.59%), Postives = 74/133 (55.64%), Query Frame = 1
Query:    7 IYYVVVPCAVLALLI-HPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLISEIVQTFILADFCYYYVKSVFGGQLVLRLPS 402
            + ++VVP AVLA L+ H  T   IL    W F +YLE+V++LPQL ++  T   E  T+HY+FALGV R L   +W+      R H       G +  + +++ +VQT +  DF Y Y+  V  G+  L LP+
Sbjct:   95 VEFLVVPTAVLAFLVNHDFTPLEIL----WTFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIW-----RYHF-----EGFFDLIAIVAGLVQTVLYCDFFYLYITKVLKGK-KLSLPA 212          
BLAST of CK939596 vs. ExPASy Swiss-Prot
Match: ERD21_MOUSE (ER lumen protein retaining receptor 1 OS=Mus musculus GN=Kdelr1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.305e-14
Identity = 49/133 (36.84%), Postives = 74/133 (55.64%), Query Frame = 1
Query:    7 IYYVVVPCAVLALLI-HPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLISEIVQTFILADFCYYYVKSVFGGQLVLRLPS 402
            + ++VVP A+LA L+ H  T   IL    W F +YLE+V++LPQL ++  T   E  T+HY+FALGV R L   +W+      R H       G +  + +++ +VQT +  DF Y Y+  V  G+  L LP+
Sbjct:   95 VEFLVVPTAILAFLVNHDFTPLEIL----WTFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIW-----RYHF-----EGFFDLIAIVAGLVQTVLYCDFFYLYITKVLKGK-KLSLPA 212          
BLAST of CK939596 vs. ExPASy Swiss-Prot
Match: ERD21_HUMAN (ER lumen protein retaining receptor 1 OS=Homo sapiens GN=KDELR1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.305e-14
Identity = 49/133 (36.84%), Postives = 74/133 (55.64%), Query Frame = 1
Query:    7 IYYVVVPCAVLALLI-HPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLISEIVQTFILADFCYYYVKSVFGGQLVLRLPS 402
            + ++VVP A+LA L+ H  T   IL    W F +YLE+V++LPQL ++  T   E  T+HY+FALGV R L   +W+      R H       G +  + +++ +VQT +  DF Y Y+  V  G+  L LP+
Sbjct:   95 VEFLVVPTAILAFLVNHDFTPLEIL----WTFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIW-----RYHF-----EGFFDLIAIVAGLVQTVLYCDFFYLYITKVLKGK-KLSLPA 212          
BLAST of CK939596 vs. ExPASy Swiss-Prot
Match: ER21A_XENLA (ER lumen protein retaining receptor 1-A OS=Xenopus laevis GN=kdelr1-A PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.305e-14
Identity = 45/133 (33.83%), Postives = 74/133 (55.64%), Query Frame = 1
Query:    7 IYYVVVPCAVLALLIHPSTSHNILN-RIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLISEIVQTFILADFCYYYVKSVFGGQLVLRLPS 402
            + +++VP A+LA L++    H+     IFW F +YLE+V++LPQL ++  T   E  T+HY+FALG+ R L   +W+ +              G +  + +++ +VQT +  DF Y YV  V  G+  L LP+
Sbjct:   95 VEFLIVPTAILAFLVN----HDFTPLEIFWTFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGIYRTLYLFNWIWRYQFE----------GFFDLIAIVAGLVQTVLYCDFFYLYVTKVLKGK-KLSLPA 212          
BLAST of CK939596 vs. ExPASy Swiss-Prot
Match: ERD2_CAEBR (ER lumen protein retaining receptor OS=Caenorhabditis briggsae GN=erd-2 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.010e-14
Identity = 42/121 (34.71%), Postives = 66/121 (54.55%), Query Frame = 1
Query:    7 IYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLISEIVQTFILADFCYYYVKSV 369
            I ++V+P  +LAL+I+      +   + W F +YLEAV+++PQL ++  T   E  TAHY+FALG  RFL   +WV +                +  + +++ IVQT + ADF Y Y+  V
Sbjct:   95 IEFLVIPSIILALIINHEF---MFMEVMWTFSIYLEAVAIMPQLFMLSRTGNAETITAHYLFALGSYRFLYIFNWVYRYYTE----------SFFDPIAVVAGIVQTVLYADFFYLYITRV 202          
The following BLAST results are available for this feature:
BLAST of CK939596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
ERD2_DROME4.644e-1534.85ER lumen protein retaining receptor OS=Drosophila ... [more]
ERD2_DICDI4.644e-1533.33ER lumen protein retaining receptor OS=Dictyosteli... [more]
ERD22_CAEEL6.066e-1537.21Putative ER lumen protein retaining receptor C28H8... [more]
ERD2_ENTHI7.922e-1531.78ER lumen protein retaining receptor OS=Entamoeba h... [more]
ERD2_CAEEL1.035e-1436.36ER lumen protein retaining receptor OS=Caenorhabdi... [more]
ERD21_RAT1.765e-1437.59ER lumen protein retaining receptor 1 OS=Rattus no... [more]
ERD21_MOUSE2.305e-1436.84ER lumen protein retaining receptor 1 OS=Mus muscu... [more]
ERD21_HUMAN2.305e-1436.84ER lumen protein retaining receptor 1 OS=Homo sapi... [more]
ER21A_XENLA2.305e-1433.83ER lumen protein retaining receptor 1-A OS=Xenopus... [more]
ERD2_CAEBR3.010e-1434.71ER lumen protein retaining receptor OS=Caenorhabdi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004748_D06 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IVF_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939596 ID=CK939596; Name=CK939596; organism=Citrus sinensis; type=EST; length=447bp
GGGGCAATATATTATGTGGTGGTACCCTGTGCAGTATTGGCTCTGTTAAT
TCATCCATCGACTTCGCATAATATATTGAATAGGATTTTCTGGGCTTTCT
GTGTTTATCTGGAAGCTGTTTCAGTACTGCCCCAGTTGCGGGTGATGCAG
AACACAAAGATTGTTGAACCATTCACAGCCCATTATGTATTTGCGCTTGG
TGTTGCGAGGTTTTTGAGCTGTGCCCACTGGGTTCTCCAGGTTCTGGATA
GTCGTGGACACTTGCTGGTAGCCCTGGGCTATGGATTATGGCCTTCGATG
GTGCTTATCTCAGAGATTGTCCAAACTTTCATCTTAGCGGACTTCTGTTA
CTACTATGTCAAAAGTGTCTTTGGTGGACAGCTAGTCCTCCGACTTCCCT
CCGGGGTGGTGTAATTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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