CX675699

Overview
NameCX675699
Unique NameCX675699
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675699 vs. ExPASy Swiss-Prot
Match: WDR18_HUMAN (WD repeat-containing protein 18 OS=Homo sapiens GN=WDR18 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 55/154 (35.71%), Postives = 76/154 (49.35%), Query Frame = 3
Query:  207 SSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFL--LLEDHFIVGEDQHSVLKGHNGSITALAFS--ASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLSEVSNCQRKLKKDRMPSL 656
            +SSLD T K+W++ SG L+ + ++  ++ A+     E  +F G  +G IF   L       E  F   +D   V KGH   +T L+ S   S L+S S D+TV LWDV  +  IR     KG VTN  +     LL+ VS     L  D  PSL
Sbjct:  191 TSSLDQTVKLWEVSSGELLLSVLFDVSIMAVTMDLAEHHMFCGGSEGSIFQVDLFTWPGQRERSFHPEQDAGKVFKGHRNQVTCLSVSTDGSVLLSGSHDETVRLWDVQSKQCIRTV-ALKGPVTNAAI-----LLAPVS----MLSSDFRPSL 334          
BLAST of CX675699 vs. ExPASy Swiss-Prot
Match: WDR18_MOUSE (WD repeat-containing protein 18 OS=Mus musculus GN=Wdr18 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 45/130 (34.62%), Postives = 67/130 (51.54%), Query Frame = 3
Query:  207 SSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFL--LLEDHFIVGEDQHSVLKGHNGSITALAFS--ASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVI 584
            ++SLD T K+W + SG L+ + ++   +T++     E  +F G  DG IF   L     L E  F   ++   V KGH   +T L+ S   S L+S S D++V LWDV  +  +R     KG VTN  +I
Sbjct:  191 TASLDQTVKLWAISSGDLLLSVLFDMGITSVTMDLAEHHIFCGGSDGSIFQVDLCSWPGLREHSFQPEQNTGKVFKGHRNQVTCLSVSTDGSVLLSGSHDESVRLWDVKSKQCLRTVT-LKGPVTNAAII 319          
BLAST of CX675699 vs. ExPASy Swiss-Prot
Match: WDR18_BOVIN (WD repeat-containing protein 18 OS=Bos taurus GN=WDR18 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 43/137 (31.39%), Postives = 68/137 (49.64%), Query Frame = 3
Query:  207 SSSLDATCKVWDLGSGILIQTQVYPQAVTAIAFHPGEQLLFAGSIDGRIFVSPLKFL--LLEDHFIVGEDQHSVLKGHNGSITALAFS--ASHLISASEDKTVCLWDVTRRVSIRRFNHKKGVVTNLVVIRQSSLLS 605
            ++SLD T K+W++ SG L+ + ++   + A+     E  +F G  DG IF   L       E  F   ++   V +GH   +T L+ S   S L+S S D+TV LWDV  +  +R    K  V    +++   S+LS
Sbjct:  191 TASLDQTVKLWEVSSGELLLSVLFDVGILAVTMDLAEHYMFCGGSDGSIFQVDLCTWPGQREKSFQPEQEHGKVFRGHRNQVTCLSVSTDGSVLLSGSHDETVRLWDVQSQQCLRTVTLKGPVTNACIMLAPVSMLS 327          
The following BLAST results are available for this feature:
BLAST of CX675699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
WDR18_HUMAN1.730e-1135.71WD repeat-containing protein 18 OS=Homo sapiens GN... [more]
WDR18_MOUSE2.260e-1134.62WD repeat-containing protein 18 OS=Mus musculus GN... [more]
WDR18_BOVIN8.587e-1131.39WD repeat-containing protein 18 OS=Bos taurus GN=W... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_64B05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-64B05-C10-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675699 ID=CX675699; Name=CX675699; organism=Citrus sinensis; type=EST; length=708bp
GGATCAGATGATGGTATGATCTGTGTTTGGTCTATGACTAGATTATTGAA
GCAAACTTCTGAATGATGCATCATTCTGATCAGTTAGACCAAAGGTTGAT
AGAAATGGAGCTGCGAAGCTTACGTTCTCTGTTACATTACTCATTGGAGC
ATAAGTCCTCTGTGACTGGCTTGCTAACTATTTCAGGTGGCACAACATTT
TTTGTATCTAGCTCGCTGGATGCAACATGCAAGGTTTGGGACCTAGGCTC
AGGAATACTCATACAAACACAAGTCTATCCACAAGCAGTAACTGCAATTG
CTTTTCATCCAGGAGAGCAGCTTTTGTTTGCTGGAAGTATAGATGGAAGA
ATATTTGTTAGCCCACTTAAATTCTTGTTACTGGAGGATCATTTTATTGT
TGGGGAAGATCAACACAGCGTACTTAAAGGACACAATGGATCAATAACTG
CATTGGCCTTTAGCGCATCCCATCTGATATCTGCATCAGAAGATAAAACT
GTCTGCCTCTGGGATGTCACTAGAAGGGTGAGCATTCGAAGATTCAACCA
TAAGAAAGGAGTAGTAACCAATCTGGTAGTAATCCGGCAGTCTTCACTGC
TTTCTGAAGTGTCAAACTGTCAGAGGAAGTTGAAAAAGGACCGCATGCCT
TCACTTGAAAAGTATCCTCAACTAAATAGCTTGTCGATGGAAATGGTTAT
TCTCCTTC
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