CK939570

Overview
NameCK939570
Unique NameCK939570
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK939570_ssr40 microsatellite CK939570_ssr40:40..51. BLAST: Citrus ESTs to Populus V2 proteins
CK939570_ssr71 microsatellite CK939570_ssr71:71..88. BLAST: Citrus ESTs to Populus V2 proteins
CK939570_ssr90 microsatellite CK939570_ssr90:90..101. BLAST: Citrus ESTs to Populus V2 proteins
CK939570_ssr381 microsatellite CK939570_ssr381:381..395. BLAST: Citrus ESTs to Populus V2 proteins
Csv1_Contig2197 contig Csv1_Contig2197:1..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK939570 vs. ExPASy Swiss-Prot
Match: PAO3_ARATH (Polyamine oxidase 3 OS=Arabidopsis thaliana GN=PAO3 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 35/71 (49.30%), Postives = 45/71 (63.38%), Query Frame = 2 
Query:  494 MDSASRSNRQLRRALCYSNNAGKGQVRSPSXXXXXXXXXXXXXXXXLHDASFKVVLLESRDRVGGRVHTDY 706
            M+S  ++NRQLR+A+C S +    + RSPS                L DASF+VV+LESRDR+GGRVHTDY
Sbjct:    1 MESGGKTNRQLRKAICVSTDEKMKKKRSPSVIVIGGGMAGISAARTLQDASFQVVVLESRDRIGGRVHTDY 71
The following BLAST results are available for this feature:
BLAST of CK939570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PAO3_ARATH1.325e-1149.30Polyamine oxidase 3 OS=Arabidopsis thaliana GN=PAO... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004748_F01 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IVF_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939570 ID=CK939570; Name=CK939570; organism=Citrus sinensis; type=EST; length=708bp
GGGGGATCACAATCGCCGTTCACCAACCTGAACCGGTCCCTCTCTCTCTC
TTTCTCTCTCTTCTCTCTCTTCTCTCTCTCTCTCTCTCTTCTCTCTCTCT
CTTGAAATTTCGTACTATTCGATAAGATTACCGTTATACCCTCAGATTTG
GTTCAAATTTTCATCCGGAGGCTGAGTGGTGTTCGATTGGGCGTTTGATT
TGGTGAAATTAGAGAAAATCGGAAAAAAGGATTCTGCATGAGCTGGTTGG
GAAAGCTGGGTTTTTATTTCCTGTATTCGAATTCCAACCATTTCATAACG
TGCCTTTTGATTTTTATCCTTCATTATTCCCCTCAATTGCCTCCCTCTTT
ATTTAAATTTGAAAAGAAAGCTACCGAGCCATTATTATTATTATTATCGT
TATTGTCGATATCATCAAATNNNATTAATAAGTTTAATTCAAATTCAAAT
AATAACTTTAGTAGTAATCGTCTCGTGTTATATTCATCAAGCCATGGATT
CTGCAAGCAGGAGTAATCGCCAGCTGCGTAGAGCTCTGTGCTACTCAAAT
AATGCGGGGAAAGGGCAGGTGAGGTCGCCATCGGTCATTGTGATCGGCGC
TGGGATGGCTGGAGTTGCGGCAGCGCGTGCTCTTCACGATGCCTCATTTA
AGGTGGTCCTTCTGGAATCTCGGGATAGAGTTGGTGGTCGAGTTCATACT
GATTATTC
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