CK939563

Overview
NameCK939563
Unique NameCK939563
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK939563 vs. ExPASy Swiss-Prot
Match: MENA_SYNY3 (Probable 1,4-dihydroxy-2-naphthoate octaprenyltransferase OS=Synechocystis sp. (strain PCC 6803) GN=menA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.175e-17
Identity = 47/98 (47.96%), Postives = 66/98 (67.35%), Query Frame = 1 
Query:  292 AIKLPTYSVALVPLTVGSATAYLQTGMFSTRCYFVLLISSVLIITWLNLSNDVYDFNTGADKNKTQSFVNLVGSRTGT-LVTAYLLL--VLGFIGLTW 576
            AIK P Y+VA+VP+TVGSA AY  TG +    + + L+S++ II W+NLSNDV+D +TG D  K  S VNL G+R    L++ + LL  VLG + ++W
Sbjct:   22 AIKPPMYTVAVVPITVGSAVAYGLTGQWHGDVFTIFLLSAIAIIAWINLSNDVFDSDTGIDVRKAHSVVNLTGNRNLVFLISNFFLLAGVLGLMSMSW 119
The following BLAST results are available for this feature:
BLAST of CK939563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
MENA_SYNY31.175e-1747.96Probable 1,4-dihydroxy-2-naphthoate octaprenyltran... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004748_G12 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IVF_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939563 ID=CK939563; Name=CK939563; organism=Citrus sinensis; type=EST; length=598bp
GGGGACTTCAACGGACACATGCACACTCTATCACTCCTTTTTTATCTCTT
CTGAGACACAGCACACAAAGACGATTCTTTTGCGGGAGCAAAAACAACTA
GCACTGAAACATGTTGATGCCAATGGCCATTTCCTTCACTAAGCAAAGTT
ATGTGACAAGAAAAGAATTATAATTCAAGCAACAGTGCCATCATGCACTG
TTTCGTTCCACAAGATAAAGCAGATTTCTCTAGTAGTATGCATCATCAGG
CAAACGAAGAGGATGTCTCCAGAGCAACCTTAATATGGAGGGCCATCAAA
TTACCTACTTACTCCGTGGCTCTGGTTCCTCTCACTGTTGGTAGTGCAAC
TGCTTATTTGCAGACAGGCATGTTTTCCACCCGGTGTTATTTTGTTCTCT
TGATTTCTTCTGTCCTCATTATTACTTGGCTGAATTTAAGCAATGATGTT
TACGATTTCAACACAGGAGCCGATAAAAACAAAACACAATCATTTGTGAA
CTTGGTTGGCAGCCGTACAGGGACCCTTGTTACTGCCTACTTGCTTCTTG
TCCTTGGCTTCATTGGGCTGACATGGGCATCTGTGGAGGCAGGAAATC
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