CK939557
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939557 vs. ExPASy Swiss-Prot
Match: DHX36_HUMAN (Probable ATP-dependent RNA helicase DHX36 OS=Homo sapiens GN=DHX36 PE=1 SV=1) HSP 1 Score: 212.616 bits (540), Expect = 1.889e-54 Identity = 109/249 (43.78%), Postives = 163/249 (65.46%), Query Frame = 1 Query: 4 IGALDDMENLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRNPFVLPVNMQKEVDEAKRSFAGDSCSDHIALLKAFDGYKDAKRN--RRERDFCWENFLSPITLQMMEDMRSQFLDLLSDIGFVD--KSKGPSAYNRYSHDLEMVCAILCAGLYPNVVQCK----RKGKRAVFYTKEVGQVALHPSSVNANQNNFPLPYMVYSEMVKTNNINVYDSTNISEYALLLFGGNLIPSKTGE 726 + ALD E LTPLG HL LPV+P+IGKM+L GA+F CL+P LTIAA+L+ ++PFV+P+ +K D ++ A D+ SDH+ ++ AF+G+++A+R R E+D+CWE FLS TLQM+ +M+ QF + L GFV K P + N S + +++ A++CAGLYP V + + +K K YTK G VA+HP SVN Q +F +++Y ++T++I +YD T +S Y LL FGG++ K + Sbjct: 677 LNALDKQEELTPLGVHLARLPVEPHIGKMILFGALFCCLDPVLTIAASLSFKDPFVIPLGKEKIADARRKELAKDTRSDHLTVVNAFEGWEEARRRGFRYEKDYCWEYFLSSNTLQMLHNMKGQFAEHLLGAGFVSSRNPKDPES-NINSDNEKIIKAVICAGLYPKVAKIRLNLGKKRKMVKVYTKTDGLVAVHPKSVNVEQTDFHYNWLIYHLKMRTSSIYLYDCTEVSPYCLLFFGGDISIQKDND 924
BLAST of CK939557 vs. ExPASy Swiss-Prot
Match: DHX36_MOUSE (Probable ATP-dependent RNA helicase DHX36 OS=Mus musculus GN=Dhx36 PE=2 SV=1) HSP 1 Score: 210.69 bits (535), Expect = 7.177e-54 Identity = 107/242 (44.21%), Postives = 161/242 (66.53%), Query Frame = 1 Query: 4 IGALDDMENLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRNPFVLPVNMQKEVDEAKRSFAGDSCSDHIALLKAFDGYKDAKRN--RRERDFCWENFLSPITLQMMEDMRSQFLDLLSDIGFVD--KSKGPSAYNRYSHDLEMVCAILCAGLYPNVVQCK----RKGKRAVFYTKEVGQVALHPSSVNANQNNFPLPYMVYSEMVKTNNINVYDSTNISEYALLLFGGNL 705 + ALD E LTPLG HL LPV+P+IGKM+L GA+F CL+P LTIAA+L+ ++PFV+P+ +K D ++ A ++ SDH+ ++ AF+G+++AKR R E+D+CWE FLS TLQM+ +M+ QF + L GFV K P A N S + +++ A++CAGLYP V + + +K K +TK G V++HP SVN Q +F +++Y ++T++I +YD T +S Y LL FGG++ Sbjct: 670 LSALDKQEELTPLGVHLARLPVEPHIGKMILFGALFCCLDPVLTIAASLSFKDPFVIPLGKEKIADARRKELAKETRSDHLTVVNAFEGWEEAKRRGFRYEKDYCWEYFLSSNTLQMLHNMKGQFAEHLLGAGFVSSRSPKDPKA-NINSDNEKIIKAVICAGLYPKVAKIRLNLGKKRKMVKVHTKSDGLVSIHPKSVNVEQTDFHYNWLIYHLKMRTSSIYLYDCTEVSPYCLLFFGGDI 910
BLAST of CK939557 vs. ExPASy Swiss-Prot
Match: DHX57_MOUSE (Putative ATP-dependent RNA helicase DHX57 OS=Mus musculus GN=Dhx57 PE=2 SV=2) HSP 1 Score: 185.652 bits (470), Expect = 2.472e-46 Identity = 113/293 (38.57%), Postives = 168/293 (57.34%), Query Frame = 1 Query: 4 IGALDDMENLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRNPFVLPVNMQKEVDEAKRSFAGDSCSDHIALLKAFDGYKDAKRN--RRERDFCWENFLSPITLQMMEDMRSQFLDLLSDIGFVDK-------------------SKGPSAYNRYSHDLEMVCAILCAGLYPNVVQCKR-----------------KGKRAVFYTKEVGQVALHPSSVNANQNNFPLPYMVYSEMVKTNNINVYDSTNISEYALLLFGGNLIPSKTGEG---IEMLGGYLHF 759 +GAL E LTPLG HL +LPVD IGK++L+G+IF+CL+PALTIAA+LA ++PFV P + ++E ++ K FA + SD++ALL A+ G++ + + R ++C +NFLS TLQ M ++ QF +LLSDIGFV + + G A N + + +++ A+LCA LYPNVVQ K K F TK G V +HPSSVN +F PY++Y E +KT+ + + D + +S Y L+LFGG + + G + + G++ F Sbjct: 1045 LGALTPDEKLTPLGYHLASLPVDVRIGKLMLLGSIFRCLDPALTIAASLAFKSPFVSPWDKKEEANQKKLEFAFAN-SDYLALLCAYKGWQLSTKESARASYNYCRQNFLSGRTLQEMASLKRQFTELLSDIGFVKEGLRAKEIEKRAQGGDGVLDATGEEA-NTNAENPKLISAVLCAALYPNVVQVKTPEGKFQKTSSGVVRLQPKSAELKFVTKNDGYVHIHPSSVNYQVRHFDSPYLLYHEKIKTSRVFIRDCSMVSVYPLVLFGGGQVNVQLQRGAFVVSLDDGWIRF 1335
BLAST of CK939557 vs. ExPASy Swiss-Prot
Match: DHX57_HUMAN (Putative ATP-dependent RNA helicase DHX57 OS=Homo sapiens GN=DHX57 PE=1 SV=2) HSP 1 Score: 181.8 bits (460), Expect = 3.570e-45 Identity = 112/293 (38.23%), Postives = 166/293 (56.66%), Query Frame = 1 Query: 4 IGALDDMENLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRNPFVLPVNMQKEVDEAKRSFAGDSCSDHIALLKAFDGYKDAKRN--RRERDFCWENFLSPITLQMMEDMRSQFLDLLSDIGF-------------------VDKSKGPSAYNRYSHDLEMVCAILCAGLYPNVVQCKR-----------------KGKRAVFYTKEVGQVALHPSSVNANQNNFPLPYMVYSEMVKTNNINVYDSTNISEYALLLFGGNLIPSKTGEG---IEMLGGYLHF 759 +GAL E LTPLG HL +LPVD IGK++L G+IF+CL+PALTIAA+LA ++PFV P + ++E ++ K FA + SD++ALL+A+ G++ + + R ++C +NFLS LQ M ++ QF +LLSDIGF V + G A N + + +++ A+LCA LYPNVVQ K K F TK G V +HPSSVN +F PY++Y E +KT+ + + D + +S Y L+LFGG + + G + + G++ F Sbjct: 1043 LGALTPDERLTPLGYHLASLPVDVRIGKLMLFGSIFRCLDPALTIAASLAFKSPFVSPWDKKEEANQKKLEFAFAN-SDYLALLQAYKGWQLSTKEGVRASYNYCRQNFLSGRVLQEMASLKRQFTELLSDIGFAREGLRAREIEKRAQGGDGVLDATGEEA-NSNAENPKLISAMLCAALYPNVVQVKSPEGKFQKTSTGAVRMQPKSAELKFVTKNDGYVHIHPSSVNYQVRHFDSPYLLYHEKIKTSRVFIRDCSMVSVYPLVLFGGGQVNVQLQRGEFVVSLDDGWIRF 1333
BLAST of CK939557 vs. ExPASy Swiss-Prot
Match: DHX29_MOUSE (ATP-dependent RNA helicase Dhx29 OS=Mus musculus GN=Dhx29 PE=2 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 3.703e-34 Identity = 92/267 (34.46%), Postives = 150/267 (56.18%), Query Frame = 1 Query: 4 IGALDDME-NLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRNPFVLPVNMQKEVDEAKRSFAGDSCSDHIALLKAFDGYKDAKRN---RRERDFCWENFLSPITLQMMEDMRSQFLDLLSDIGFV-----DKSKGPSAYNRYSHDLEMVCAILCAGLYPNV--VQCKRK----GKRAVFYTKEVGQVALHPSSVNANQNNFPLPYMVYSEMVKTNNINVYDSTNISEYALLLFGGNLIPSKTGEGIEMLGGYLHF 759 IGA + E LTPLG+HL LPV+ IGKML+ GAIF CL P T+AA + ++PF+ P+ + E D AK S A + SDH+ + A+ G+K A++ R E +C NFL+ +L +ED++ + + L+ GF + KGP + D+ ++ A+L AGLY +V + C + K A G+ +HPSSVN + + +++Y E V+ + + ++T I+ + +LLFGG+ I + E + + G+++F Sbjct: 1055 IGACEPNEPKLTPLGQHLAALPVNVKIGKMLIFGAIFGCLEPVATLAAVMTEKSPFITPIGRKDEADLAKSSLA-VADSDHLTIYNAYLGWKKAQQEGGFRSEISYCQRNFLNRTSLLTLEDVKQELMKLVKAAGFSSSPSWEGRKGPQTLS--FQDIALLKAVLAAGLYDSVGKIMCTKSVDVTEKLACMVETAQGKAQVHPSSVNRDLQTY--GWLLYQEKVRYTRVYLRETTLITPFPVLLFGGD-IEVQHRERLLSVDGWIYF 1315
BLAST of CK939557 vs. ExPASy Swiss-Prot
Match: YTDC2_PONAB (YTH domain-containing protein 2 OS=Pongo abelii GN=YTHDC2 PE=2 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 9.121e-33 Identity = 89/252 (35.32%), Postives = 137/252 (54.37%), Query Frame = 1 Query: 4 IGALDDMENLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRNPFVLP--VNMQKEVDEAKRSFAGDSCSDHIALLKAFDGYKDAKRNRRERDFCWENFLSPITLQMMEDMRSQFLDLLSDIGFVDKSKGPSA--YNRYSHDLEMVCAILCAGLYPNVVQCKRKGKRAVFYTKEVGQVALHPSSV---------------NANQNNFPLPYMVYSEMVKTNNI-NVYDSTNISEYALLLFGG 699 I A+D E+LT LG HL LPV+P++GKM+L + +CL+P LTIA LA+R+PFVLP + ++ ++ F + SDH+ALL+AF ++ A+ + ER FC +NFLS T++++ MR+Q L L GFV G N S + +V A L AG+YPN+V R + V + +V HP+SV A P +++Y EM + + I N+ + ++ +L+F G Sbjct: 57 IDAMDTWEDLTELGYHLADLPVEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGAFSDHMALLRAFQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGGDIRDVNTNSENWAVVKAALVAGMYPNLVHVDR--ENLVLTGPKEKKVRFHPASVLSQPQYKKIPPANGQAAAIKALPTDWLIYDEMTRAHRIANIRCCSAVTPVTILVFCG 306
BLAST of CK939557 vs. ExPASy Swiss-Prot
Match: YTDC2_HUMAN (Probable ATP-dependent RNA helicase YTHDC2 OS=Homo sapiens GN=YTHDC2 PE=1 SV=2) HSP 1 Score: 140.584 bits (353), Expect = 9.121e-33 Identity = 89/252 (35.32%), Postives = 137/252 (54.37%), Query Frame = 1 Query: 4 IGALDDMENLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRNPFVLP--VNMQKEVDEAKRSFAGDSCSDHIALLKAFDGYKDAKRNRRERDFCWENFLSPITLQMMEDMRSQFLDLLSDIGFVDKSKGPSA--YNRYSHDLEMVCAILCAGLYPNVVQCKRKGKRAVFYTKEVGQVALHPSSV---------------NANQNNFPLPYMVYSEMVKTNNI-NVYDSTNISEYALLLFGG 699 I A+D E+LT LG HL LPV+P++GKM+L + +CL+P LTIA LA+R+PFVLP + ++ ++ F + SDH+ALL+AF ++ A+ + ER FC +NFLS T++++ MR+Q L L GFV G N S + +V A L AG+YPN+V R + V + +V HP+SV A P +++Y EM + + I N+ + ++ +L+F G Sbjct: 816 IDAMDTWEDLTELGYHLADLPVEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGAFSDHMALLRAFQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGGDIRDVNTNSENWAVVKAALVAGMYPNLVHVDR--ENLVLTGPKEKKVRFHPASVLSQPQYKKIPPANGQAAAIKALPTDWLIYDEMTRAHRIANIRCCSAVTPVTILVFCG 1065
BLAST of CK939557 vs. ExPASy Swiss-Prot
Match: YTDC2_MOUSE (Probable ATP-dependent RNA helicase YTHDC2 OS=Mus musculus GN=Ythdc2 PE=2 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.556e-32 Identity = 88/252 (34.92%), Postives = 137/252 (54.37%), Query Frame = 1 Query: 4 IGALDDMENLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRNPFVLP--VNMQKEVDEAKRSFAGDSCSDHIALLKAFDGYKDAKRNRRERDFCWENFLSPITLQMMEDMRSQFLDLLSDIGFVDKSKGPSA--YNRYSHDLEMVCAILCAGLYPNVVQCKRKGKRAVFYTKEVGQVALHPSSV---------------NANQNNFPLPYMVYSEMVKTNNI-NVYDSTNISEYALLLFGG 699 I A+D E+LT LG HL LPV+P++GKM+L + +CL+P LTIA LA+R+PFVLP + ++ ++ F + SDH+ALL+AF ++ A+ + ER FC +NFLS T++++ MR+Q L L GFV G N S + +V A L AG+YPN+V R + + + +V HP+SV A P +++Y EM + + I N+ + ++ +L+F G Sbjct: 831 IDAMDAWEDLTELGYHLADLPVEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGTFSDHMALLRAFQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGGDIRDVNTNSENWAVVKAALVAGMYPNLVHVDR--ENVILTGPKEKKVRFHPTSVLSQPQYKKIPPANGQAAAIQALPTDWLIYDEMTRAHRIANIRCCSAVTPVTVLVFCG 1080
BLAST of CK939557 vs. ExPASy Swiss-Prot
Match: DHX29_HUMAN (ATP-dependent RNA helicase DHX29 OS=Homo sapiens GN=DHX29 PE=1 SV=2) HSP 1 Score: 137.502 bits (345), Expect = 7.721e-32 Identity = 94/276 (34.06%), Postives = 151/276 (54.71%), Query Frame = 1 Query: 4 IGALDDME-NLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRNPFVLPVNMQKEVDEAKRSFAGDSCSDHIALLKAFDGYKDAKRN---RRERDFCWENFLSPITLQMMEDMRSQFLDLLSDIGFVDKSKGPS-AYNRYS-----HDLEMVCAILCAGLYPNVVQCKRKGKRAVFYTKEV--------------GQVALHPSSVNANQNNFPLPYMVYSEMVKTNNINVYDSTNISEYALLLFGGNLIPSKTGEGIEMLGGYLHF 759 IGA + E LTPLG+HL LPV+ IGKML+ GAIF CL+P T+AA + ++PF P+ + E D AK + A + SDH+ + A+ G+K A++ R E +C NFL+ +L +ED++ + + L+ GF + S NR S ++ ++ A+L AGLY NV GK + YTK V G+ +HPSSVN + +++Y E ++ + + ++T I+ + +LLFGG+ I + E + + G+++F Sbjct: 1056 IGACELNEPKLTPLGQHLAALPVNVKIGKMLIFGAIFGCLDPVATLAAVMTEKSPFTTPIGRKDEADLAKSALA-MADSDHLTIYNAYLGWKKARQEGGYRSEITYCRRNFLNRTSLLTLEDVKQELIKLVKAAGFSSSTTSTSWEGNRASQTLSFQEIALLKAVLVAGLYDNV------GK--IIYTKSVDVTEKLACIVETAQGKAQVHPSSVNRDLQTH--GWLLYQEKIRYARVYLRETTLITPFPVLLFGGD-IEVQHRERLLSIDGWIYF 1319
BLAST of CK939557 vs. ExPASy Swiss-Prot
Match: DHX9_XENLA (ATP-dependent RNA helicase A-like protein OS=Xenopus laevis GN=dhx9 PE=2 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 2.247e-31 Identity = 89/253 (35.18%), Postives = 137/253 (54.15%), Query Frame = 1 Query: 4 IGALDDMENLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRNPFVLPVNMQKEVDEAKRSFAGDSCSDHIALLKAFDGYKDAKRNRRERD--FCWENFLSPITLQMMEDMRSQFLDLLSDIGFVDKSKGPSAYNRYSHD--LEMVCAILCAGLYPNVVQCKRKGKRAVFYTKEVGQVALHPSSVN---ANQN-NFPLPYMVYSEMVKTNNINVYDSTNISEYALLLFGGNLIPSKTGEGIEM 738 + ALD + LTPLGR L LP++P +GKM+++G IF + TI+AA PF ++ + + R+FAG+ SDH+ALL F + DA+ + + FC L+ TL+M + + Q D+L + GF ++ +N D L++V ++L G+YPNV C K KR + T E +H SSVN +NQ+ +P P+ V+SE ++T I+ T +S LLLF + S GE I + Sbjct: 841 LDALDSNDELTPLGRILAKLPIEPRLGKMMIIGCIFYVGDALCTISAATCFPEPF---ISEGRRLGYVHRNFAGNRFSDHVALLSVFQAWDDARMGGEDAETRFCEHKRLNMATLRMTWEAKVQLKDILVNAGFPEECLMNQVFNNTGPDNNLDVVISLLAFGVYPNV--CYHKEKRKIL-TTEGRNALIHKSSVNCPFSNQDLKYPSPFFVFSEKIRTRAISAKGMTMVSPLQLLLFASKKVMS-DGEFIHL 1086 The following BLAST results are available for this feature:
BLAST of CK939557 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CK939557 ID=CK939557; Name=CK939557; organism=Citrus sinensis; type=EST; length=762bpback to top |