CK939557

Overview
NameCK939557
Unique NameCK939557
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939557 vs. ExPASy Swiss-Prot
Match: DHX36_HUMAN (Probable ATP-dependent RNA helicase DHX36 OS=Homo sapiens GN=DHX36 PE=1 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.889e-54
Identity = 109/249 (43.78%), Postives = 163/249 (65.46%), Query Frame = 1
Query:    4 IGALDDMENLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRNPFVLPVNMQKEVDEAKRSFAGDSCSDHIALLKAFDGYKDAKRN--RRERDFCWENFLSPITLQMMEDMRSQFLDLLSDIGFVD--KSKGPSAYNRYSHDLEMVCAILCAGLYPNVVQCK----RKGKRAVFYTKEVGQVALHPSSVNANQNNFPLPYMVYSEMVKTNNINVYDSTNISEYALLLFGGNLIPSKTGE 726
            + ALD  E LTPLG HL  LPV+P+IGKM+L GA+F CL+P LTIAA+L+ ++PFV+P+  +K  D  ++  A D+ SDH+ ++ AF+G+++A+R   R E+D+CWE FLS  TLQM+ +M+ QF + L   GFV     K P + N  S + +++ A++CAGLYP V + +    +K K    YTK  G VA+HP SVN  Q +F   +++Y   ++T++I +YD T +S Y LL FGG++   K  +
Sbjct:  677 LNALDKQEELTPLGVHLARLPVEPHIGKMILFGALFCCLDPVLTIAASLSFKDPFVIPLGKEKIADARRKELAKDTRSDHLTVVNAFEGWEEARRRGFRYEKDYCWEYFLSSNTLQMLHNMKGQFAEHLLGAGFVSSRNPKDPES-NINSDNEKIIKAVICAGLYPKVAKIRLNLGKKRKMVKVYTKTDGLVAVHPKSVNVEQTDFHYNWLIYHLKMRTSSIYLYDCTEVSPYCLLFFGGDISIQKDND 924          
BLAST of CK939557 vs. ExPASy Swiss-Prot
Match: DHX36_MOUSE (Probable ATP-dependent RNA helicase DHX36 OS=Mus musculus GN=Dhx36 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 7.177e-54
Identity = 107/242 (44.21%), Postives = 161/242 (66.53%), Query Frame = 1
Query:    4 IGALDDMENLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRNPFVLPVNMQKEVDEAKRSFAGDSCSDHIALLKAFDGYKDAKRN--RRERDFCWENFLSPITLQMMEDMRSQFLDLLSDIGFVD--KSKGPSAYNRYSHDLEMVCAILCAGLYPNVVQCK----RKGKRAVFYTKEVGQVALHPSSVNANQNNFPLPYMVYSEMVKTNNINVYDSTNISEYALLLFGGNL 705
            + ALD  E LTPLG HL  LPV+P+IGKM+L GA+F CL+P LTIAA+L+ ++PFV+P+  +K  D  ++  A ++ SDH+ ++ AF+G+++AKR   R E+D+CWE FLS  TLQM+ +M+ QF + L   GFV     K P A N  S + +++ A++CAGLYP V + +    +K K    +TK  G V++HP SVN  Q +F   +++Y   ++T++I +YD T +S Y LL FGG++
Sbjct:  670 LSALDKQEELTPLGVHLARLPVEPHIGKMILFGALFCCLDPVLTIAASLSFKDPFVIPLGKEKIADARRKELAKETRSDHLTVVNAFEGWEEAKRRGFRYEKDYCWEYFLSSNTLQMLHNMKGQFAEHLLGAGFVSSRSPKDPKA-NINSDNEKIIKAVICAGLYPKVAKIRLNLGKKRKMVKVHTKSDGLVSIHPKSVNVEQTDFHYNWLIYHLKMRTSSIYLYDCTEVSPYCLLFFGGDI 910          
BLAST of CK939557 vs. ExPASy Swiss-Prot
Match: DHX57_MOUSE (Putative ATP-dependent RNA helicase DHX57 OS=Mus musculus GN=Dhx57 PE=2 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 2.472e-46
Identity = 113/293 (38.57%), Postives = 168/293 (57.34%), Query Frame = 1
Query:    4 IGALDDMENLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRNPFVLPVNMQKEVDEAKRSFAGDSCSDHIALLKAFDGYKDAKRN--RRERDFCWENFLSPITLQMMEDMRSQFLDLLSDIGFVDK-------------------SKGPSAYNRYSHDLEMVCAILCAGLYPNVVQCKR-----------------KGKRAVFYTKEVGQVALHPSSVNANQNNFPLPYMVYSEMVKTNNINVYDSTNISEYALLLFGGNLIPSKTGEG---IEMLGGYLHF 759
            +GAL   E LTPLG HL +LPVD  IGK++L+G+IF+CL+PALTIAA+LA ++PFV P + ++E ++ K  FA  + SD++ALL A+ G++ + +   R   ++C +NFLS  TLQ M  ++ QF +LLSDIGFV +                   + G  A N  + + +++ A+LCA LYPNVVQ K                  K     F TK  G V +HPSSVN    +F  PY++Y E +KT+ + + D + +S Y L+LFGG  +  +   G   + +  G++ F
Sbjct: 1045 LGALTPDEKLTPLGYHLASLPVDVRIGKLMLLGSIFRCLDPALTIAASLAFKSPFVSPWDKKEEANQKKLEFAFAN-SDYLALLCAYKGWQLSTKESARASYNYCRQNFLSGRTLQEMASLKRQFTELLSDIGFVKEGLRAKEIEKRAQGGDGVLDATGEEA-NTNAENPKLISAVLCAALYPNVVQVKTPEGKFQKTSSGVVRLQPKSAELKFVTKNDGYVHIHPSSVNYQVRHFDSPYLLYHEKIKTSRVFIRDCSMVSVYPLVLFGGGQVNVQLQRGAFVVSLDDGWIRF 1335          
BLAST of CK939557 vs. ExPASy Swiss-Prot
Match: DHX57_HUMAN (Putative ATP-dependent RNA helicase DHX57 OS=Homo sapiens GN=DHX57 PE=1 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 3.570e-45
Identity = 112/293 (38.23%), Postives = 166/293 (56.66%), Query Frame = 1
Query:    4 IGALDDMENLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRNPFVLPVNMQKEVDEAKRSFAGDSCSDHIALLKAFDGYKDAKRN--RRERDFCWENFLSPITLQMMEDMRSQFLDLLSDIGF-------------------VDKSKGPSAYNRYSHDLEMVCAILCAGLYPNVVQCKR-----------------KGKRAVFYTKEVGQVALHPSSVNANQNNFPLPYMVYSEMVKTNNINVYDSTNISEYALLLFGGNLIPSKTGEG---IEMLGGYLHF 759
            +GAL   E LTPLG HL +LPVD  IGK++L G+IF+CL+PALTIAA+LA ++PFV P + ++E ++ K  FA  + SD++ALL+A+ G++ + +   R   ++C +NFLS   LQ M  ++ QF +LLSDIGF                   V  + G  A N  + + +++ A+LCA LYPNVVQ K                  K     F TK  G V +HPSSVN    +F  PY++Y E +KT+ + + D + +S Y L+LFGG  +  +   G   + +  G++ F
Sbjct: 1043 LGALTPDERLTPLGYHLASLPVDVRIGKLMLFGSIFRCLDPALTIAASLAFKSPFVSPWDKKEEANQKKLEFAFAN-SDYLALLQAYKGWQLSTKEGVRASYNYCRQNFLSGRVLQEMASLKRQFTELLSDIGFAREGLRAREIEKRAQGGDGVLDATGEEA-NSNAENPKLISAMLCAALYPNVVQVKSPEGKFQKTSTGAVRMQPKSAELKFVTKNDGYVHIHPSSVNYQVRHFDSPYLLYHEKIKTSRVFIRDCSMVSVYPLVLFGGGQVNVQLQRGEFVVSLDDGWIRF 1333          
BLAST of CK939557 vs. ExPASy Swiss-Prot
Match: DHX29_MOUSE (ATP-dependent RNA helicase Dhx29 OS=Mus musculus GN=Dhx29 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.703e-34
Identity = 92/267 (34.46%), Postives = 150/267 (56.18%), Query Frame = 1
Query:    4 IGALDDME-NLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRNPFVLPVNMQKEVDEAKRSFAGDSCSDHIALLKAFDGYKDAKRN---RRERDFCWENFLSPITLQMMEDMRSQFLDLLSDIGFV-----DKSKGPSAYNRYSHDLEMVCAILCAGLYPNV--VQCKRK----GKRAVFYTKEVGQVALHPSSVNANQNNFPLPYMVYSEMVKTNNINVYDSTNISEYALLLFGGNLIPSKTGEGIEMLGGYLHF 759
            IGA +  E  LTPLG+HL  LPV+  IGKML+ GAIF CL P  T+AA +  ++PF+ P+  + E D AK S A  + SDH+ +  A+ G+K A++    R E  +C  NFL+  +L  +ED++ + + L+   GF      +  KGP   +    D+ ++ A+L AGLY +V  + C +      K A       G+  +HPSSVN +   +   +++Y E V+   + + ++T I+ + +LLFGG+ I  +  E +  + G+++F
Sbjct: 1055 IGACEPNEPKLTPLGQHLAALPVNVKIGKMLIFGAIFGCLEPVATLAAVMTEKSPFITPIGRKDEADLAKSSLA-VADSDHLTIYNAYLGWKKAQQEGGFRSEISYCQRNFLNRTSLLTLEDVKQELMKLVKAAGFSSSPSWEGRKGPQTLS--FQDIALLKAVLAAGLYDSVGKIMCTKSVDVTEKLACMVETAQGKAQVHPSSVNRDLQTY--GWLLYQEKVRYTRVYLRETTLITPFPVLLFGGD-IEVQHRERLLSVDGWIYF 1315          
BLAST of CK939557 vs. ExPASy Swiss-Prot
Match: YTDC2_PONAB (YTH domain-containing protein 2 OS=Pongo abelii GN=YTHDC2 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.121e-33
Identity = 89/252 (35.32%), Postives = 137/252 (54.37%), Query Frame = 1
Query:    4 IGALDDMENLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRNPFVLP--VNMQKEVDEAKRSFAGDSCSDHIALLKAFDGYKDAKRNRRERDFCWENFLSPITLQMMEDMRSQFLDLLSDIGFVDKSKGPSA--YNRYSHDLEMVCAILCAGLYPNVVQCKRKGKRAVFYTKEVGQVALHPSSV---------------NANQNNFPLPYMVYSEMVKTNNI-NVYDSTNISEYALLLFGG 699
            I A+D  E+LT LG HL  LPV+P++GKM+L   + +CL+P LTIA  LA+R+PFVLP   + ++     ++ F   + SDH+ALL+AF  ++ A+ +  ER FC +NFLS  T++++  MR+Q L  L   GFV    G      N  S +  +V A L AG+YPN+V   R  +  V    +  +V  HP+SV                A     P  +++Y EM + + I N+   + ++   +L+F G
Sbjct:   57 IDAMDTWEDLTELGYHLADLPVEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGAFSDHMALLRAFQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGGDIRDVNTNSENWAVVKAALVAGMYPNLVHVDR--ENLVLTGPKEKKVRFHPASVLSQPQYKKIPPANGQAAAIKALPTDWLIYDEMTRAHRIANIRCCSAVTPVTILVFCG 306          
BLAST of CK939557 vs. ExPASy Swiss-Prot
Match: YTDC2_HUMAN (Probable ATP-dependent RNA helicase YTHDC2 OS=Homo sapiens GN=YTHDC2 PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 9.121e-33
Identity = 89/252 (35.32%), Postives = 137/252 (54.37%), Query Frame = 1
Query:    4 IGALDDMENLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRNPFVLP--VNMQKEVDEAKRSFAGDSCSDHIALLKAFDGYKDAKRNRRERDFCWENFLSPITLQMMEDMRSQFLDLLSDIGFVDKSKGPSA--YNRYSHDLEMVCAILCAGLYPNVVQCKRKGKRAVFYTKEVGQVALHPSSV---------------NANQNNFPLPYMVYSEMVKTNNI-NVYDSTNISEYALLLFGG 699
            I A+D  E+LT LG HL  LPV+P++GKM+L   + +CL+P LTIA  LA+R+PFVLP   + ++     ++ F   + SDH+ALL+AF  ++ A+ +  ER FC +NFLS  T++++  MR+Q L  L   GFV    G      N  S +  +V A L AG+YPN+V   R  +  V    +  +V  HP+SV                A     P  +++Y EM + + I N+   + ++   +L+F G
Sbjct:  816 IDAMDTWEDLTELGYHLADLPVEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGAFSDHMALLRAFQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGGDIRDVNTNSENWAVVKAALVAGMYPNLVHVDR--ENLVLTGPKEKKVRFHPASVLSQPQYKKIPPANGQAAAIKALPTDWLIYDEMTRAHRIANIRCCSAVTPVTILVFCG 1065          
BLAST of CK939557 vs. ExPASy Swiss-Prot
Match: YTDC2_MOUSE (Probable ATP-dependent RNA helicase YTHDC2 OS=Mus musculus GN=Ythdc2 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.556e-32
Identity = 88/252 (34.92%), Postives = 137/252 (54.37%), Query Frame = 1
Query:    4 IGALDDMENLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRNPFVLP--VNMQKEVDEAKRSFAGDSCSDHIALLKAFDGYKDAKRNRRERDFCWENFLSPITLQMMEDMRSQFLDLLSDIGFVDKSKGPSA--YNRYSHDLEMVCAILCAGLYPNVVQCKRKGKRAVFYTKEVGQVALHPSSV---------------NANQNNFPLPYMVYSEMVKTNNI-NVYDSTNISEYALLLFGG 699
            I A+D  E+LT LG HL  LPV+P++GKM+L   + +CL+P LTIA  LA+R+PFVLP   + ++     ++ F   + SDH+ALL+AF  ++ A+ +  ER FC +NFLS  T++++  MR+Q L  L   GFV    G      N  S +  +V A L AG+YPN+V   R  +  +    +  +V  HP+SV                A     P  +++Y EM + + I N+   + ++   +L+F G
Sbjct:  831 IDAMDAWEDLTELGYHLADLPVEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGTFSDHMALLRAFQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGGDIRDVNTNSENWAVVKAALVAGMYPNLVHVDR--ENVILTGPKEKKVRFHPTSVLSQPQYKKIPPANGQAAAIQALPTDWLIYDEMTRAHRIANIRCCSAVTPVTVLVFCG 1080          
BLAST of CK939557 vs. ExPASy Swiss-Prot
Match: DHX29_HUMAN (ATP-dependent RNA helicase DHX29 OS=Homo sapiens GN=DHX29 PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 7.721e-32
Identity = 94/276 (34.06%), Postives = 151/276 (54.71%), Query Frame = 1
Query:    4 IGALDDME-NLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRNPFVLPVNMQKEVDEAKRSFAGDSCSDHIALLKAFDGYKDAKRN---RRERDFCWENFLSPITLQMMEDMRSQFLDLLSDIGFVDKSKGPS-AYNRYS-----HDLEMVCAILCAGLYPNVVQCKRKGKRAVFYTKEV--------------GQVALHPSSVNANQNNFPLPYMVYSEMVKTNNINVYDSTNISEYALLLFGGNLIPSKTGEGIEMLGGYLHF 759
            IGA +  E  LTPLG+HL  LPV+  IGKML+ GAIF CL+P  T+AA +  ++PF  P+  + E D AK + A  + SDH+ +  A+ G+K A++    R E  +C  NFL+  +L  +ED++ + + L+   GF   +   S   NR S      ++ ++ A+L AGLY NV      GK  + YTK V              G+  +HPSSVN +       +++Y E ++   + + ++T I+ + +LLFGG+ I  +  E +  + G+++F
Sbjct: 1056 IGACELNEPKLTPLGQHLAALPVNVKIGKMLIFGAIFGCLDPVATLAAVMTEKSPFTTPIGRKDEADLAKSALA-MADSDHLTIYNAYLGWKKARQEGGYRSEITYCRRNFLNRTSLLTLEDVKQELIKLVKAAGFSSSTTSTSWEGNRASQTLSFQEIALLKAVLVAGLYDNV------GK--IIYTKSVDVTEKLACIVETAQGKAQVHPSSVNRDLQTH--GWLLYQEKIRYARVYLRETTLITPFPVLLFGGD-IEVQHRERLLSIDGWIYF 1319          
BLAST of CK939557 vs. ExPASy Swiss-Prot
Match: DHX9_XENLA (ATP-dependent RNA helicase A-like protein OS=Xenopus laevis GN=dhx9 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.247e-31
Identity = 89/253 (35.18%), Postives = 137/253 (54.15%), Query Frame = 1
Query:    4 IGALDDMENLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRNPFVLPVNMQKEVDEAKRSFAGDSCSDHIALLKAFDGYKDAKRNRRERD--FCWENFLSPITLQMMEDMRSQFLDLLSDIGFVDKSKGPSAYNRYSHD--LEMVCAILCAGLYPNVVQCKRKGKRAVFYTKEVGQVALHPSSVN---ANQN-NFPLPYMVYSEMVKTNNINVYDSTNISEYALLLFGGNLIPSKTGEGIEM 738
            + ALD  + LTPLGR L  LP++P +GKM+++G IF   +   TI+AA     PF   ++  + +    R+FAG+  SDH+ALL  F  + DA+    + +  FC    L+  TL+M  + + Q  D+L + GF ++      +N    D  L++V ++L  G+YPNV  C  K KR +  T E     +H SSVN   +NQ+  +P P+ V+SE ++T  I+    T +S   LLLF    + S  GE I +
Sbjct:  841 LDALDSNDELTPLGRILAKLPIEPRLGKMMIIGCIFYVGDALCTISAATCFPEPF---ISEGRRLGYVHRNFAGNRFSDHVALLSVFQAWDDARMGGEDAETRFCEHKRLNMATLRMTWEAKVQLKDILVNAGFPEECLMNQVFNNTGPDNNLDVVISLLAFGVYPNV--CYHKEKRKIL-TTEGRNALIHKSSVNCPFSNQDLKYPSPFFVFSEKIRTRAISAKGMTMVSPLQLLLFASKKVMS-DGEFIHL 1086          
The following BLAST results are available for this feature:
BLAST of CK939557 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
DHX36_HUMAN1.889e-5443.78Probable ATP-dependent RNA helicase DHX36 OS=Homo ... [more]
DHX36_MOUSE7.177e-5444.21Probable ATP-dependent RNA helicase DHX36 OS=Mus m... [more]
DHX57_MOUSE2.472e-4638.57Putative ATP-dependent RNA helicase DHX57 OS=Mus m... [more]
DHX57_HUMAN3.570e-4538.23Putative ATP-dependent RNA helicase DHX57 OS=Homo ... [more]
DHX29_MOUSE3.703e-3434.46ATP-dependent RNA helicase Dhx29 OS=Mus musculus G... [more]
YTDC2_PONAB9.121e-3335.32YTH domain-containing protein 2 OS=Pongo abelii GN... [more]
YTDC2_HUMAN9.121e-3335.32Probable ATP-dependent RNA helicase YTHDC2 OS=Homo... [more]
YTDC2_MOUSE1.556e-3234.92Probable ATP-dependent RNA helicase YTHDC2 OS=Mus ... [more]
DHX29_HUMAN7.721e-3234.06ATP-dependent RNA helicase DHX29 OS=Homo sapiens G... [more]
DHX9_XENLA2.247e-3135.18ATP-dependent RNA helicase A-like protein OS=Xenop... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939557 ID=CK939557; Name=CK939557; organism=Citrus sinensis; type=EST; length=762bp
GGGATTGGGGCTTTAGATGACATGGAGAATCTTACTCCGCTTGGTCGCCA
TCTTTGCACTCTGCCTGTGGACCCCAACATTGGAAAGATGCTTCTAATGG
GAGCTATCTTTCAATGCCTCAATCCTGCTTTAACAATTGCAGCTGCTCTT
GCGCATCGCAACCCATTTGTTCTTCCAGTAAATATGCAGAAGGAGGTTGA
TGAAGCAAAGAGATCCTTTGCTGGTGATTCTTGCAGTGATCACATAGCAC
TTCTCAAAGCTTTTGATGGATATAAGGATGCAAAACGTAATCGAAGGGAA
AGAGACTTCTGTTGGGAAAATTTTTTATCTCCAATAACCTTGCAGATGAT
GGAGGATATGAGAAGCCAGTTTCTGGATCTGCTATCGGACATAGGCTTTG
TAGACAAATCCAAGGGTCCTAGTGCTTACAACCGATACAGCCATGATTTG
GAGATGGTATGTGCAATTCTTTGTGCTGGGCTCTACCCAAATGTTGTGCA
GTGCAAAAGAAAAGGAAAGCGAGCTGTATTCTACACAAAAGAAGTTGGGC
AGGTGGCACTCCATCCATCTTCTGTTAATGCAAACCAAAATAACTTTCCA
CTGCCTTACATGGTTTATAGTGAAATGGTGAAGACAAACAACATCAATGT
CTATGACTCAACCAATATATCAGAATATGCTTTGCTTCTATTTGGTGGTA
ATCTCATTCCTAGCAAAACTGGGGAGGGCATTGAAATGCTTGGTGGTTAC
CTCCATTTCTCT
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