CK939551

Overview
NameCK939551
Unique NameCK939551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1509 contig Csv1_Contig1509:560..1142. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939551 vs. ExPASy Swiss-Prot
Match: CY561_MOUSE (Cytochrome b561 OS=Mus musculus GN=Cyb561 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.225e-16
Identity = 40/105 (38.10%), Postives = 59/105 (56.19%), Query Frame = 2
Query:    5 NLYSLHSWLGIAVISLYGIQWLYGFVISFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTFLENSGLAKYGSEALLVNFTAVITILYGAFVIFSVA 319
            +LYSLHSW GI V  LY +QWL GF    +PG S  LRS   P H+ FG  +++ +V  A +G  E L F   S  + +  E +L N   ++ + +G  V++ +A
Sbjct:  115 DLYSLHSWCGILVFVLYFVQWLVGFSFFLFPGASFSLRSRYRPQHIFFGATIFLFSVGTALLGLKEALLFKLGSKYSTFEPEGVLANVLGLLLVCFGVVVLYILA 219          
BLAST of CK939551 vs. ExPASy Swiss-Prot
Match: CY561_PONAB (Cytochrome b561 OS=Pongo abelii GN=CYB561 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.037e-15
Identity = 39/102 (38.24%), Postives = 56/102 (54.90%), Query Frame = 2
Query:    5 NLYSLHSWLGIAVISLYGIQWLYGFVISFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTFLENSGLAKYGSEALLVNFTAVITILYGAFVIF 310
            +LYSLHSW GI V  LY +QWL GF    +PG S  LRS   P H+ FG  +++L+V  A +G  E L F      + +  E +L N   ++   +G  V++
Sbjct:  116 DLYSLHSWCGILVFVLYFVQWLVGFSFFLFPGASFSLRSRYRPQHIFFGATIFLLSVGTALLGLKEALLFKLRDKYSAFEPEGVLANVLGLLLACFGGAVLY 217          
BLAST of CK939551 vs. ExPASy Swiss-Prot
Match: CY561_PIG (Cytochrome b561 OS=Sus scrofa GN=CYB561 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.037e-15
Identity = 40/102 (39.22%), Postives = 58/102 (56.86%), Query Frame = 2
Query:    5 NLYSLHSWLGIAVISLYGIQWLYGFVISFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTFLENSGLAKYGSEALLVNFTAVITILYGAFVIF 310
            +LYSLHSW GI V  L+  QWL G     +PG S  LRS   P HV FG  +++L+V  A +G  E L F   +  + + SE +L N   ++ + +GA V++
Sbjct:  117 DLYSLHSWCGILVFVLFLAQWLVGLGFFLFPGASFSLRSRYRPQHVFFGAAIFLLSVGTALLGLKEALLFQLGTKYSAFESEGVLANVLGLLLVAFGAVVLY 218          
BLAST of CK939551 vs. ExPASy Swiss-Prot
Match: CY561_HUMAN (Cytochrome b561 OS=Homo sapiens GN=CYB561 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.355e-15
Identity = 39/102 (38.24%), Postives = 56/102 (54.90%), Query Frame = 2
Query:    5 NLYSLHSWLGIAVISLYGIQWLYGFVISFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTFLENSGLAKYGSEALLVNFTAVITILYGAFVIF 310
            +LYSLHSW GI V  LY +QWL GF    +PG S  LRS   P H+ FG  +++L+V  A +G  E L F      + +  E +L N   ++   +G  V++
Sbjct:  116 DLYSLHSWCGILVFVLYFVQWLVGFSFFLFPGASFSLRSRYRPQHIFFGATIFLLSVGTALLGLKEALLFNLGGKYSAFEPEGVLANVLGLLLACFGGAVLY 217          
BLAST of CK939551 vs. ExPASy Swiss-Prot
Match: CY561_SHEEP (Cytochrome b561 OS=Ovis aries GN=CYB561 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.942e-15
Identity = 39/102 (38.24%), Postives = 57/102 (55.88%), Query Frame = 2
Query:    5 NLYSLHSWLGIAVISLYGIQWLYGFVISFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTFLENSGLAKYGSEALLVNFTAVITILYGAFVIF 310
            +LYSLHSW GI V +L+  QWL GF    +PG S  LRS   P HV FG  +++L+VA A +G  E L F   +  + +  E +L N   ++   +   V++
Sbjct:  117 DLYSLHSWCGILVFALFFAQWLVGFSFFLFPGASFSLRSRYRPQHVFFGAAIFLLSVATALLGLKEALLFELGTKYSTFEPEGVLANVLGLLLAAFATVVLY 218          
BLAST of CK939551 vs. ExPASy Swiss-Prot
Match: CY561_BOVIN (Cytochrome b561 OS=Bos taurus GN=CYB561 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 5.149e-15
Identity = 38/102 (37.25%), Postives = 57/102 (55.88%), Query Frame = 2
Query:    5 NLYSLHSWLGIAVISLYGIQWLYGFVISFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTFLENSGLAKYGSEALLVNFTAVITILYGAFVIF 310
            +LYSLHSW GI V +L+  QWL GF    +PG S  LRS   P HV FG  +++L+VA A +G  E L F   +  + +  E +L N   ++   +   +++
Sbjct:  117 DLYSLHSWCGILVFALFFAQWLVGFSFFLFPGASFSLRSRYRPQHVFFGAAIFLLSVATALLGLKEALLFELGTKYSMFEPEGVLANVLGLLLATFATVILY 218          
BLAST of CK939551 vs. ExPASy Swiss-Prot
Match: CYAC3_RAT (Cytochrome b ascorbate-dependent protein 3 OS=Rattus norvegicus GN=Cybasc3 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.725e-15
Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = 2
Query:    5 NLYSLHSWLGIAVISLYGIQWLYGFVISFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTFLENSGLAKYGS---EALLVNFTAVITILYGAFVIF 310
            +LYSLHSWLGI  ++L+  QW  GF +   P  S  LRS   P HV FG  +  L++A+   G  EKL F+  +    Y S   EA+  N T ++ + +G  V++
Sbjct:  112 HLYSLHSWLGITTVALFACQWFLGFAVFLLPWASQWLRSLLKPVHVFFGACILSLSIASVISGINEKLFFVLKNATRPYSSLPGEAVFANSTGILVVSFGLLVLY 216          
BLAST of CK939551 vs. ExPASy Swiss-Prot
Match: CYBR1_XENLA (Cytochrome b reductase 1 OS=Xenopus laevis GN=cybrd1 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.147e-14
Identity = 40/107 (37.38%), Postives = 63/107 (58.88%), Query Frame = 2
Query:    5 NLYSLHSWLGIAVISLYGIQWLYGFVISFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTF-LENSGLAKYGSEALLVNFTAVITILYGAFVIFSVAS 322
            N+YSLHSW+G+ V+ LY +Q + G  I   P  S  LR+  +P HV  GLF++   +A A +G  EKL F L+    +K   EA+ VN   ++ +++G  V++ V +
Sbjct:  113 NMYSLHSWIGLTVVILYALQLVLGVSIYLLPFASNTLRAALMPVHVYSGLFIFGTVIATALMGITEKLIFSLKEPPYSKLPPEAIFVNTFGLLILVFGGLVVWMVTT 219          
BLAST of CK939551 vs. ExPASy Swiss-Prot
Match: CYAC3_BOVIN (Cytochrome b ascorbate-dependent protein 3 OS=Bos taurus GN=CYBASC3 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.147e-14
Identity = 41/105 (39.05%), Postives = 57/105 (54.29%), Query Frame = 2
Query:    5 NLYSLHSWLGIAVISLYGIQWLYGFVISFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTFLENSGLAKYG---SEALLVNFTAVITILYGAFVIF 310
            +LYSLHSWLGI  + L+  QW  GF +   P  S  LRS   P HV FG  +  LA+A+   G  EKL F   +G   Y    SEA+  N   ++ +++G  V++
Sbjct:  112 HLYSLHSWLGITTVFLFACQWFLGFSVFLLPWASMWLRSLLKPIHVFFGASILSLAIASVVSGINEKLFFSLKNGTKTYSNLPSEAVFANCAGMLVVVFGLLVLY 216          
BLAST of CK939551 vs. ExPASy Swiss-Prot
Match: CYAC3_HUMAN (Cytochrome b ascorbate-dependent protein 3 OS=Homo sapiens GN=CYBASC3 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.337e-14
Identity = 41/105 (39.05%), Postives = 56/105 (53.33%), Query Frame = 2
Query:    5 NLYSLHSWLGIAVISLYGIQWLYGFVISFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTFLENSGLAKY---GSEALLVNFTAVITILYGAFVIF 310
            NLYSLHSWLGI  + L+  QW  GF +   P  S  LRS   P HV FG  +  L++A+   G  EKL F   +    Y    SEA+  N T ++ + +G  V++
Sbjct:  112 NLYSLHSWLGITTVFLFACQWFLGFAVFLLPWASMWLRSLLKPIHVFFGAAILSLSIASVISGINEKLFFSLKNTTRPYHSLPSEAVFANSTGMLVVAFGLLVLY 216          
The following BLAST results are available for this feature:
BLAST of CK939551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
CY561_MOUSE1.225e-1638.10Cytochrome b561 OS=Mus musculus GN=Cyb561 PE=2 SV=... [more]
CY561_PONAB1.037e-1538.24Cytochrome b561 OS=Pongo abelii GN=CYB561 PE=2 SV=... [more]
CY561_PIG1.037e-1539.22Cytochrome b561 OS=Sus scrofa GN=CYB561 PE=2 SV=1[more]
CY561_HUMAN1.355e-1538.24Cytochrome b561 OS=Homo sapiens GN=CYB561 PE=2 SV=... [more]
CY561_SHEEP3.942e-1538.24Cytochrome b561 OS=Ovis aries GN=CYB561 PE=2 SV=1[more]
CY561_BOVIN5.149e-1537.25Cytochrome b561 OS=Bos taurus GN=CYB561 PE=1 SV=2[more]
CYAC3_RAT6.725e-1538.10Cytochrome b ascorbate-dependent protein 3 OS=Ratt... [more]
CYBR1_XENLA1.147e-1437.38Cytochrome b reductase 1 OS=Xenopus laevis GN=cybr... [more]
CYAC3_BOVIN1.147e-1439.05Cytochrome b ascorbate-dependent protein 3 OS=Bos ... [more]
CYAC3_HUMAN3.337e-1439.05Cytochrome b ascorbate-dependent protein 3 OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_A02 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939551 ID=CK939551; Name=CK939551; organism=Citrus sinensis; type=EST; length=583bp
GGGCAATCTTTATAGCTTGCATTCTTGGCTTGGAATTGCCGTAATTTCCC
TTTATGGCATTCAGTGGTTATACGGGTTTGTAATTTCCTTCTATCCTGGA
GGATCAACTGGACTAAGAAGTGAATCGCTTCCATGGCACGTACTATTCGG
GCTGTTTGTGTACATTCTGGCCGTTGCCAATGCAGCCATCGGGTTCCTGG
AGAAGCTCACATTCCTGGAGAATTCAGGCCTTGCTAAATATGGCTCTGAG
GCTTTGCTTGTCAACTTCACCGCTGTTATCACAATCTTATATGGAGCCTT
TGTTATATTCTCTGTTGCTTCTCAGGGTCCGGCTGAGGATGACTACAGCT
ATTCAGCTATATAAATATGAGAACTGTGTATTATACACGTTATGCTGACT
ATTAAGTTAGTCATCGGCCTAATTCCTATGCAAAGCTAAAATGCGTTGTG
TTATTTGTATGTAATTGTAGTCTTTGTTTGTAGACGTTTGAAACGAGACC
ATCTTATCAATTACGGTGGGAGTTTATGTTCAATTAGTTCGTCTGTTTTA
ATAACAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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