CK939546

Overview
NameCK939546
Unique NameCK939546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK939546_ssr103 microsatellite CK939546_ssr103:103..114. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK939546 vs. ExPASy Swiss-Prot
Match: SURA_LEGPL (Chaperone surA OS=Legionella pneumophila (strain Lens) GN=surA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.921e-13
Identity = 41/124 (33.06%), Postives = 75/124 (60.48%), Query Frame = 1
Query:  298 VQHLLVKEDDLNLLSE-------LQRRVSQGEDLSDLAVEHSI-CPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQ 642
            V+H+L+K D   + SE       + R++  G+D + +A ++S+   S  +GG LGWV  G+LVPEFE+   + PL+KV++  KT++GWHL++V++ R+    +  +  ++ + +Q   F +  Q
Sbjct:  286 VRHILLKPDASMVPSEAIKQVNNIYRQIQSGKDFALMAKQYSLDAASAVKGGDLGWVNPGELVPEFEKTMNSLPLHKVSKPVKTQYGWHLIEVIARRQKDDSEAFKKQQVRQFLQQRKFVEAVQ 409          
BLAST of CK939546 vs. ExPASy Swiss-Prot
Match: SURA_LEGPH (Chaperone surA OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=surA PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.921e-13
Identity = 41/124 (33.06%), Postives = 75/124 (60.48%), Query Frame = 1
Query:  298 VQHLLVKEDDLNLLSE-------LQRRVSQGEDLSDLAVEHSI-CPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQ 642
            V+H+L+K D   + SE       + R++  G+D + +A ++S+   S  +GG LGWV  G+LVPEFE+   + PL+KV++  KT++GWHL++V++ R+    +  +  ++ + +Q   F +  Q
Sbjct:  286 VRHILLKPDASMVPSEAIKQVNNIYRQIQSGKDFALMAKQYSLDAASAVKGGDLGWVNPGELVPEFEKTMNSLPLHKVSKPVKTQYGWHLIEVIARRQKDDSEAFKKQQVRQFLQQRKFVEAVQ 409          
BLAST of CK939546 vs. ExPASy Swiss-Prot
Match: SURA_LEGPA (Chaperone surA OS=Legionella pneumophila (strain Paris) GN=surA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.921e-13
Identity = 41/124 (33.06%), Postives = 75/124 (60.48%), Query Frame = 1
Query:  298 VQHLLVKEDDLNLLSE-------LQRRVSQGEDLSDLAVEHSI-CPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQ 642
            V+H+L+K D   + SE       + R++  G+D + +A ++S+   S  +GG LGWV  G+LVPEFE+   + PL+KV++  KT++GWHL++V++ R+    +  +  ++ + +Q   F +  Q
Sbjct:  286 VRHILLKPDASMVPSEAIKQVNNIYRQIQSGKDFALMAKQYSLDAASAVKGGDLGWVNPGELVPEFEKTMNSLPLHKVSKPVKTQYGWHLIEVIARRQKDDSEAFKKQQVRQFLQQRKFVEAVQ 409          
BLAST of CK939546 vs. ExPASy Swiss-Prot
Match: SURA_METCA (Chaperone surA OS=Methylococcus capsulatus GN=surA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.432e-12
Identity = 48/122 (39.34%), Postives = 71/122 (58.20%), Query Frame = 1
Query:  298 VQHLLVK-------EDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKG---EGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVLSEREAS----LLQDIQPDELHKKMQD 618
            V+H+L++       ED  N L  L+ R+  G+D ++LA  HS    KG   +GG LGWV+ G LVP FEE       N+++   +T+FGWHL+QVL  +E+S    +L++   DEL K+  D
Sbjct:  292 VRHILIRPNEVLSDEDAKNKLLALKTRIENGDDFAELARGHS--DDKGSAIKGGDLGWVKPGALVPPFEEAMNALDENQLSDPVQTQFGWHLIQVLERQESSDTNEVLKNRARDELFKRKVD 411          
BLAST of CK939546 vs. ExPASy Swiss-Prot
Match: SURA_HAHCH (Chaperone surA OS=Hahella chejuensis (strain KCTC 2396) GN=surA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.432e-12
Identity = 44/138 (31.88%), Postives = 76/138 (55.07%), Query Frame = 1
Query:  298 VQHLLVKEDDLN-------LLSELQRRVSQGEDLSDLAVEHSI-CPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQ--LIDVREPEEVAL 678
            V+H+LV++++L        L+ E+  +V  GED ++LA  +S    S   GG L WV  G +VPEF+++   TP+  V++  ++ FGWH+LQV   REA +   +   +  + +    + +E Q  L ++R+   V L
Sbjct:  295 VRHILVQQNELRDEIAAKKLIEEIYGKVQAGEDFAELAKAYSDDAVSAAAGGSLDWVNPGDMVPEFDQMMRETPVGAVSKPFQSTFGWHILQVQDRREADIGDRLMASQARQVLHRRKYEEELQNWLSEIRDEAFVQL 432          
BLAST of CK939546 vs. ExPASy Swiss-Prot
Match: PPIC_SALTY (Peptidyl-prolyl cis-trans isomerase C OS=Salmonella typhimurium GN=ppiC PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.870e-12
Identity = 38/84 (45.24%), Postives = 55/84 (65.48%), Query Frame = 1
Query:  304 HLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTP-LNKVARCKTKFGWHLLQVL 552
            H+LVKE+ L L  +L  ++  G D   LA +HSICPS  +GG LG  R+GQ+VP F++V F+ P L       T+FG+H+++VL
Sbjct:    9 HILVKEEKLAL--DLLEQIKNGGDFEKLAKKHSICPSGKKGGHLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVL 90          
BLAST of CK939546 vs. ExPASy Swiss-Prot
Match: PPIC_SALTI (Peptidyl-prolyl cis-trans isomerase C OS=Salmonella typhi GN=ppiC PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.870e-12
Identity = 38/84 (45.24%), Postives = 55/84 (65.48%), Query Frame = 1
Query:  304 HLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTP-LNKVARCKTKFGWHLLQVL 552
            H+LVKE+ L L  +L  ++  G D   LA +HSICPS  +GG LG  R+GQ+VP F++V F+ P L       T+FG+H+++VL
Sbjct:    9 HILVKEEKLAL--DLLEQIKNGGDFEKLAKKHSICPSGKKGGHLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVL 90          
BLAST of CK939546 vs. ExPASy Swiss-Prot
Match: PPIC_ECOLI (Peptidyl-prolyl cis-trans isomerase C OS=Escherichia coli (strain K12) GN=ppiC PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.442e-12
Identity = 38/84 (45.24%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  304 HLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTP-LNKVARCKTKFGWHLLQVL 552
            H+LVKE+ L L  +L  ++  G D   LA +HSICPS   GG LG  R+GQ+VP F++V F+ P L       T+FG+H+++VL
Sbjct:    9 HILVKEEKLAL--DLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVL 90          
BLAST of CK939546 vs. ExPASy Swiss-Prot
Match: PPIC_ECOL6 (Peptidyl-prolyl cis-trans isomerase C OS=Escherichia coli O6 GN=ppiC PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.442e-12
Identity = 38/84 (45.24%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  304 HLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTP-LNKVARCKTKFGWHLLQVL 552
            H+LVKE+ L L  +L  ++  G D   LA +HSICPS   GG LG  R+GQ+VP F++V F+ P L       T+FG+H+++VL
Sbjct:    9 HILVKEEKLAL--DLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVL 90          
BLAST of CK939546 vs. ExPASy Swiss-Prot
Match: PPIC_ECO57 (Peptidyl-prolyl cis-trans isomerase C OS=Escherichia coli O157:H7 GN=ppiC PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.442e-12
Identity = 38/84 (45.24%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  304 HLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTP-LNKVARCKTKFGWHLLQVL 552
            H+LVKE+ L L  +L  ++  G D   LA +HSICPS   GG LG  R+GQ+VP F++V F+ P L       T+FG+H+++VL
Sbjct:    9 HILVKEEKLAL--DLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVL 90          
The following BLAST results are available for this feature:
BLAST of CK939546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
SURA_LEGPL4.921e-1333.06Chaperone surA OS=Legionella pneumophila (strain L... [more]
SURA_LEGPH4.921e-1333.06Chaperone surA OS=Legionella pneumophila subsp. pn... [more]
SURA_LEGPA4.921e-1333.06Chaperone surA OS=Legionella pneumophila (strain P... [more]
SURA_METCA1.432e-1239.34Chaperone surA OS=Methylococcus capsulatus GN=surA... [more]
SURA_HAHCH1.432e-1231.88Chaperone surA OS=Hahella chejuensis (strain KCTC ... [more]
PPIC_SALTY1.870e-1245.24Peptidyl-prolyl cis-trans isomerase C OS=Salmonell... [more]
PPIC_SALTI1.870e-1245.24Peptidyl-prolyl cis-trans isomerase C OS=Salmonell... [more]
PPIC_ECOLI2.442e-1245.24Peptidyl-prolyl cis-trans isomerase C OS=Escherich... [more]
PPIC_ECOL62.442e-1245.24Peptidyl-prolyl cis-trans isomerase C OS=Escherich... [more]
PPIC_ECO572.442e-1245.24Peptidyl-prolyl cis-trans isomerase C OS=Escherich... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_C03 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939546 ID=CK939546; Name=CK939546; organism=Citrus sinensis; type=EST; length=787bp
GGGGACTCGAAAATCAAAGAAGCGATGATGCTAAGAGCAAGTCAGTTAGC
ATCGCCTGTGCTCTGTGCTATTACACAGTCTCTGATTCCCACTCTAAACC
TGTCTTCTTCTTCTTCACTTTCAATCTTTCAAAAACCCGCCTCTTTTGCT
TCTTTTTACAAATCCTTAAACCCAGCTTCCAATTCCAATTCTTTTCATAT
TCATATTATATCCCGAAGCTTTACATCTCCTAAAGCTGCTTCATTTAGTT
CTGGGACTGAGGGTAGTAGCCCAGGTGGTGGCGATAGAGAAATATTGGTC
CAACACTTGCTTGTTAAAGAAGATGACCTCAACCTACTGTCGGAACTTCA
ACGCAGGGTTTCTCAAGGAGAGGATTTGAGTGATCTTGCCGTTGAACACT
CAATTTGTCCGTCCAAAGGAGAGGGAGGAATGCTTGGCTGGGTGAGGAAG
GGGCAATTGGTTCCAGAATTTGAGGAGGTTGCATTCACTACCCCTTTGAA
CAAAGTTGCAAGGTGTAAAACAAAATTTGGATGGCACTTGTTGCAAGTTC
TATCTGAGAGGGAAGCGTCATTACTTCAAGACATTCAGCCAGATGAACTT
CACAAAAAAATGCAGGATCCCAATTTTCATAAAGAGGCACAATTGATTGA
TGTTCGAGAGCCTGAAGAAGTTGCCCTTTCTTCTTTGCCGGGATTTCAAG
TGCTTCCCCTCCGCCAATTTGGAAGCTGGGGACCAGATGTAACTGCCAAG
TTTGATCCTCAGAAGGATACATATGTAATGTGTCACC
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