CK939533

Overview
NameCK939533
Unique NameCK939533
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2194 contig Csv1_Contig2194:1..787. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939533 vs. ExPASy Swiss-Prot
Match: GALE1_ARATH (UDP-glucose 4-epimerase 1 OS=Arabidopsis thaliana GN=At1g12780 PE=1 SV=2)

HSP 1 Score: 380.563 bits (976), Expect = 5.438e-105
Identity = 180/231 (77.92%), Postives = 205/231 (88.74%), Query Frame = 3
Query:   93 EKNILVTGGAGFIGTHCALQLLHGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADPEWRIILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDG 785
            E+NILVTGGAGFIGTH  +QLL  GFKV +IDN  NSV EAVDRV++L GP+L+KKL+F++GDLRNK D++KLFS Q+FDAVIHF  LKAV ESV++P RYFDNNL+GTINLY+ MAKYNCK +VFSSSAT+YGQPEKIPC+EDF   AMNPYGRTK + EEIA D+QKA+PEWRIILLRYFNPVGAHESG +GEDPKGIPNNLMPYIQQVAVGR PELNVYG DYPT+DG
Sbjct:    6 EQNILVTGGAGFIGTHTVVQLLKDGFKVSIIDNFDNSVIEAVDRVRELVGPDLSKKLDFNLGDLRNKGDIEKLFSKQRFDAVIHFAGLKAVGESVENPRRYFDNNLVGTINLYETMAKYNCKMMVFSSSATVYGQPEKIPCMEDFELKAMNPYGRTKLFLEEIARDIQKAEPEWRIILLRYFNPVGAHESGSIGEDPKGIPNNLMPYIQQVAVGRLPELNVYGHDYPTEDG 236          
BLAST of CK939533 vs. ExPASy Swiss-Prot
Match: GALE1_PEA (UDP-glucose 4-epimerase OS=Pisum sativum GN=GALE PE=2 SV=1)

HSP 1 Score: 372.859 bits (956), Expect = 1.134e-102
Identity = 177/234 (75.64%), Postives = 203/234 (86.75%), Query Frame = 3
Query:   84 MASEKNILVTGGAGFIGTHCALQLLHGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADPEWRIILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDG 785
            +AS + ILVTG AGFIGTH  +QLL+ GF V +IDN  NSV EAV+RV+++ G  L++ LEF +GDLRNKDDL+KLFS  KFDAVIHF  LKAV ESV++P RYFDNNL+GTINLY+ MAK+NCKK+VFSSSAT+YGQPEKIPCVEDF   AMNPYGRTK + EEIA D+QKA+PEWRI+LLRYFNPVGAHESGKLGEDP+GIPNNLMPYIQQVAVGR PELNVYG DYPT+DG
Sbjct:    2 VASSQKILVTGSAGFIGTHTVVQLLNNGFNVSIIDNFDNSVMEAVERVREVVGSNLSQNLEFTLGDLRNKDDLEKLFSKSKFDAVIHFAGLKAVGESVENPRRYFDNNLVGTINLYEVMAKHNCKKMVFSSSATVYGQPEKIPCVEDFKLQAMNPYGRTKLFLEEIARDIQKAEPEWRIVLLRYFNPVGAHESGKLGEDPRGIPNNLMPYIQQVAVGRLPELNVYGHDYPTRDG 235          
BLAST of CK939533 vs. ExPASy Swiss-Prot
Match: GALE1_CYATE (UDP-glucose 4-epimerase GEPI42 OS=Cyamopsis tetragonoloba PE=2 SV=1)

HSP 1 Score: 338.191 bits (866), Expect = 3.095e-92
Identity = 163/234 (69.66%), Postives = 191/234 (81.62%), Query Frame = 3
Query:   84 MASEKNILVTGGAGFIGTHCALQLLHGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADPEWRIILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDG 785
            MAS + ILVTGGAGFIG+H  +QLL  GF V +IDNL+NSV +AV RV+ L GP L+  L FH GDLRN  DLD LFS  KFDAVIHF  LK V ESV +P  Y+DNNL+ TINL+Q M+K+NCKKLV SSSAT+YGQP++IPCVED    AMNPYGR+K + EE+A D+Q+A+ EWRIILLRYFNPVGAHESG++GEDP+G+PNNLMPYIQQVAV R PELN+YG DYPTKDG
Sbjct:    6 MASGETILVTGGAGFIGSHTVVQLLKQGFHVSIIDNLYNSVIDAVHRVRLLVGPLLSSNLHFHHGDLRNIHDLDILFSKTKFDAVIHFAGLKGVGESVLNPSNYYDNNLVATINLFQVMSKFNCKKLVISSSATVYGQPDQIPCVEDSNLHAMNPYGRSKLFVEEVARDIQRAEAEWRIILLRYFNPVGAHESGQIGEDPRGLPNNLMPYIQQVAVARLPELNIYGHDYPTKDG 239          
BLAST of CK939533 vs. ExPASy Swiss-Prot
Match: GALE2_CYATE (UDP-glucose 4-epimerase GEPI48 OS=Cyamopsis tetragonoloba PE=2 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.393e-84
Identity = 150/232 (64.66%), Postives = 182/232 (78.45%), Query Frame = 3
Query:   90 SEKNILVTGGAGFIGTHCALQLLHGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADPEWRIILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDG 785
            S + +LVTGGAG+IG+H  LQLL GGFK V++DNL NS   A+ RVK+LAG + A  L FH  DLR++D L+K+FSS KFD+VIHF  LKAV ESVQ P  Y+DNNLIGTI L++ MA + CKKLVFSSSAT+YG P+++PC E+FP  A NPYGRTK   EEI  D+ +A+ EW+IILLRYFNPVGAH SG +GEDP+GIPNNLMP++QQVAVGR P L V+G DY T DG
Sbjct:    2 SSQTVLVTGGAGYIGSHTVLQLLLGGFKAVVVDNLDNSSETAIHRVKELAG-KFAGNLSFHKLDLRDRDALEKIFSSTKFDSVIHFAGLKAVGESVQKPLLYYDNNLIGTIVLFEVMAAHGCKKLVFSSSATVYGLPKEVPCTEEFPLSAANPYGRTKLIIEEICRDIYRAEQEWKIILLRYFNPVGAHPSGYIGEDPRGIPNNLMPFVQQVAVGRRPALTVFGNDYTTSDG 232          
BLAST of CK939533 vs. ExPASy Swiss-Prot
Match: GALE2_ARATH (UDP-glucose 4-epimerase 2 OS=Arabidopsis thaliana GN=At4g10960 PE=2 SV=3)

HSP 1 Score: 306.99 bits (785), Expect = 7.641e-83
Identity = 144/230 (62.61%), Postives = 181/230 (78.70%), Query Frame = 3
Query:   96 KNILVTGGAGFIGTHCALQLLHGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADPEWRIILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDG 785
            +N+LV+GGAG+IG+H  LQLL GG+ VV++DNL NS   ++ RVK LA  E  ++L FH  DLR++  L+K+FS  KFDAVIHF  LKAV ESV+ P  Y++NNL+GTI L + MA++ CK LVFSSSAT+YG P+++PC E+FP  A+NPYGRTK + EEI  DV  +DPEW+IILLRYFNPVGAH SG +GEDP+GIPNNLMP++QQVAVGR P L V+G DY TKDG
Sbjct:    4 RNVLVSGGAGYIGSHTVLQLLLGGYSVVVVDNLDNSSAVSLQRVKKLAA-EHGERLSFHQVDLRDRSALEKIFSETKFDAVIHFAGLKAVGESVEKPLLYYNNNLVGTITLLEVMAQHGCKNLVFSSSATVYGSPKEVPCTEEFPISALNPYGRTKLFIEEICRDVYGSDPEWKIILLRYFNPVGAHPSGDIGEDPRGIPNNLMPFVQQVAVGRRPHLTVFGNDYNTKDG 232          
BLAST of CK939533 vs. ExPASy Swiss-Prot
Match: GALE3_ARATH (UDP-glucose 4-epimerase 3 OS=Arabidopsis thaliana GN=At4g23920 PE=2 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 4.193e-81
Identity = 141/230 (61.30%), Postives = 176/230 (76.52%), Query Frame = 3
Query:   96 KNILVTGGAGFIGTHCALQLLHGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADPEWRIILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDG 785
            K++LVTGGAG+IG+H  LQLL GG+  V++DN  NS   ++ RVK LAG E   +L FH  DLR++  L+K+FS  KFDAVIHF  LKAV ESV+ P  Y++NN++GT+ L + MA+Y CK LVFSSSAT+YG P+++PC E+ P  A NPYGRTK + EEI  DV ++D EW+IILLRYFNPVGAH SG +GEDP G+PNNLMPY+QQVAVGR P L V+G DY TKDG
Sbjct:    3 KSVLVTGGAGYIGSHTVLQLLEGGYSAVVVDNYDNSSAASLQRVKKLAG-ENGNRLSFHQVDLRDRPALEKIFSETKFDAVIHFAGLKAVGESVEKPLLYYNNNIVGTVTLLEVMAQYGCKNLVFSSSATVYGWPKEVPCTEESPISATNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGYIGEDPLGVPNNLMPYVQQVAVGRRPHLTVFGTDYKTKDG 231          
BLAST of CK939533 vs. ExPASy Swiss-Prot
Match: GALE_BACSU (UDP-glucose 4-epimerase OS=Bacillus subtilis GN=galE PE=3 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.223e-72
Identity = 130/228 (57.02%), Postives = 169/228 (74.12%), Query Frame = 3
Query:  102 ILVTGGAGFIGTHCALQLLHGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADPEWRIILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDG 785
            ILVTGGAG+IG+H  ++LL+ G+++V++DNL NS  EA++RVK++ G    K L F+  DL +++ +D +F+  + +AVIHF  LKAV ESV  P +Y+ NNL GT  L +AM KY  KK+VFSSSAT+YG PE  P  EDFP GA NPYG+TK   E+I  D+  AD EW + LLRYFNP GAH SG++GEDP GIPNNLMPY+ QVAVG+  +L+V+G DYPTKDG
Sbjct:    3 ILVTGGAGYIGSHTCVELLNSGYEIVVLDNLSNSSAEALNRVKEITG----KDLTFYEADLLDREAVDSVFAENEIEAVIHFAGLKAVGESVAIPLKYYHNNLTGTFILCEAMEKYGVKKIVFSSSATVYGVPETSPITEDFPLGATNPYGQTKLMLEQILRDLHTADNEWSVALLRYFNPFGAHPSGRIGEDPNGIPNNLMPYVAQVAVGKLEQLSVFGNDYPTKDG 226          
BLAST of CK939533 vs. ExPASy Swiss-Prot
Match: GALE_DICDI (UDP-glucose 4-epimerase OS=Dictyostelium discoideum GN=galE PE=1 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 2.386e-68
Identity = 121/231 (52.38%), Postives = 162/231 (70.13%), Query Frame = 3
Query:   93 EKNILVTGGAGFIGTHCALQLLHGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADPEWRIILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDG 785
            +  I+VTGGAG+IG+H  ++L+  G+  V++DNL NS  EA+ RV+ + G    K++EFH  D+ N+  LD++F +    +VIHF  LKAV ES + P +Y++NN+ GT+ L   M K+  KKLVFSSSAT+YG P  +P  EDFP  A NPYGRTK + E I  D+  +DPEW  I+LRYFNPVGAH SG +GEDPK IPNNLMPY+ Q A+G+ P L+++G DY T DG
Sbjct:    5 DDRIMVTGGAGYIGSHTVIELIEAGYTPVIVDNLSNSSLEAIKRVESITG----KEIEFHHVDIMNEKALDEIFETGNIRSVIHFAGLKAVGESNKLPLKYYNNNIAGTLTLLNLMDKHRVKKLVFSSSATVYGDPHTVPITEDFPLSATNPYGRTKLYVEGILQDLCASDPEWNCIMLRYFNPVGAHPSGLIGEDPKDIPNNLMPYVTQTAIGKRPILSIFGNDYNTPDG 231          
BLAST of CK939533 vs. ExPASy Swiss-Prot
Match: GALE_NEIMA (UDP-glucose 4-epimerase OS=Neisseria meningitidis serogroup A GN=galE PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 2.020e-67
Identity = 124/231 (53.68%), Postives = 163/231 (70.56%), Query Frame = 3
Query:   96 KNILVTGGAGFIGTHCALQLLHGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYG-AMNPYGRTKQWCEEIAFDVQKADPEWRIILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDG 785
            KNILVTGG GFIG+H  + LL  G +VV++DNL NS    + R+K + G E+     F+ GD+R+++ L ++F+  + D+VIHF  LKAV ESV  P +Y+DNN+ G++ L + MA+     +VFSSSAT+YG P K+P  ED P G   +PYG +K   E I  D+QKADP W +ILLRYFNP+GAHESG +GE P GIPNNL+PYI QVA GR P+L+V+G DYPT DG
Sbjct:    2 KNILVTGGTGFIGSHTVVSLLKSGHQVVILDNLCNSSINILPRLKTITGQEIP----FYQGDIRDREILRRIFAENRIDSVIHFAGLKAVGESVAEPMKYYDNNVSGSLVLAEEMARAGVFSIVFSSSATVYGDPGKVPYTEDMPLGDTTSPYGTSKSMVERILTDIQKADPRWSMILLRYFNPIGAHESGLIGEQPNGIPNNLLPYICQVASGRLPQLSVFGGDYPTPDG 228          
BLAST of CK939533 vs. ExPASy Swiss-Prot
Match: GALE_NEIMB (UDP-glucose 4-epimerase OS=Neisseria meningitidis serogroup B GN=galE PE=3 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.917e-66
Identity = 122/231 (52.81%), Postives = 161/231 (69.70%), Query Frame = 3
Query:   96 KNILVTGGAGFIGTHCALQLLHGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYG-AMNPYGRTKQWCEEIAFDVQKADPEWRIILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDG 785
            K ILVTGG GFIG+H  + LL  G +VV++DNL NS    + R+K + G E+     F+ GD+R+++ L ++F+  + D+VIHF  LKAV ESV  P +Y+DNN+ G++ L + MA+     +VFSSSAT+YG P K+P  ED P G   +PYG +K   E I  D+QKADP W +ILLRYFNP+GAHESG +GE P GIPNNL+PYI QVA G+ P+L V+G DYPT DG
Sbjct:    2 KKILVTGGTGFIGSHTVVSLLKSGHQVVILDNLCNSSINILPRLKTITGQEIP----FYQGDIRDREILRRIFAENRIDSVIHFAGLKAVGESVAEPMKYYDNNVSGSLVLAEEMARAGVFSIVFSSSATVYGDPGKVPYTEDMPPGDTTSPYGASKSMVERILTDIQKADPRWSMILLRYFNPIGAHESGLIGEQPNGIPNNLLPYICQVAAGKLPQLAVFGDDYPTPDG 228          
The following BLAST results are available for this feature:
BLAST of CK939533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
GALE1_ARATH5.438e-10577.92UDP-glucose 4-epimerase 1 OS=Arabidopsis thaliana ... [more]
GALE1_PEA1.134e-10275.64UDP-glucose 4-epimerase OS=Pisum sativum GN=GALE P... [more]
GALE1_CYATE3.095e-9269.66UDP-glucose 4-epimerase GEPI42 OS=Cyamopsis tetrag... [more]
GALE2_CYATE1.393e-8464.66UDP-glucose 4-epimerase GEPI48 OS=Cyamopsis tetrag... [more]
GALE2_ARATH7.641e-8362.61UDP-glucose 4-epimerase 2 OS=Arabidopsis thaliana ... [more]
GALE3_ARATH4.193e-8161.30UDP-glucose 4-epimerase 3 OS=Arabidopsis thaliana ... [more]
GALE_BACSU1.223e-7257.02UDP-glucose 4-epimerase OS=Bacillus subtilis GN=ga... [more]
GALE_DICDI2.386e-6852.38UDP-glucose 4-epimerase OS=Dictyostelium discoideu... [more]
GALE_NEIMA2.020e-6753.68UDP-glucose 4-epimerase OS=Neisseria meningitidis ... [more]
GALE_NEIMB2.917e-6652.81UDP-glucose 4-epimerase OS=Neisseria meningitidis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004749_C10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939533 ID=CK939533; Name=CK939533; organism=Citrus sinensis; type=EST; length=787bp
GGGGACTTTATTCATTTNNNTCTTTTTAATATAATCGTCGCTCTCACCTT
CTTTCCCCTTCTCCTCCAATCCTTTGCCTTGCAATGGCGTCAGAGAAAAA
TATCCTGGTGACCGGTGGAGCTGGCTTTATTGGAACGCACTGTGCGCTTC
AGCTTCTACATGGAGGGTTTAAGGTGGTGCTTATCGATAATTTACATAAC
TCTGTCCCTGAAGCTGTTGATAGAGTCAAGGACTTGGCGGGTCCTGAGCT
CGCTAAGAAGCTCGAGTTCCATGTGGGTGATCTTAGGAACAAGGATGACT
TGGATAAGCTTTTTTCTAGTCAAAAATTTGATGCTGTGATCCATTTTGGT
GCCCTTAAGGCTGTGGCAGAGAGTGTTCAACATCCTTTCCGTTATTTTGA
TAATAATTTGATTGGTACCATCAATCTGTATCAGGCCATGGCAAAATATA
ACTGTAAGAAGTTGGTATTTTCATCATCCGCAACTATCTATGGACAGCCT
GAAAAAATACCTTGTGTTGAGGACTTCCCGTATGGTGCTATGAATCCTTA
TGGACGAACTAAGCAATGGTGCGAAGAAATTGCTTTTGATGTTCAAAAGG
CAGACCCAGAATGGAGAATAATATTACTGAGGTACTTCAATCCTGTTGGT
GCTCATGAGAGTGGTAAACTCGGTGAAGATCCAAAGGGCATACCAAACAA
TCTCATGCCTTACATACAGCAAGTCGCCGTCGGCAGACATCCAGAGCTTA
ATGTTTATGGTCAGGATTATCCAACAAAGGATGGTAG
back to top