CX675695

Overview
NameCX675695
Unique NameCX675695
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX675695_ssr87 microsatellite CX675695_ssr87:87..101. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of CX675695 vs. ExPASy Swiss-Prot
Match: RPIA_PROMA (Ribose-5-phosphate isomerase A OS=Prochlorococcus marinus GN=rpiA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.976e-11
Identity = 45/144 (31.25%), Postives = 72/144 (50.00%), Query Frame = 3 
Query:  282 ITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDTSQXXXXXXXXXXXEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQY--KGVLDGSVPVLVQPVNWMETAEEIDDL 707
            I  GM++GLGSG  +A+ I+ +G +L+ G+LK++IG+PTS      A+  GIPL  +   S+           +    +         G    +QEK V + AD+ V +V   +   K  L+  +PV V P  W    +E++DL
Sbjct:   20 IKDGMILGLGSGSTAALMIKSLGEKLKEGSLKEIIGVPTSFQGEVLASQLGIPLRAFSAVSKIDLAIDGADEVDPNFQLI------KGGGACHVQEKLVASIADRFVVVVDSTKIVEKLNLEFKLPVEVLPAAWKLVQKELNDL 157
[Close]
BLAST of CX675695 vs. ExPASy Swiss-Prot
Match: RPIA_ARATH (Probable ribose-5-phosphate isomerase OS=Arabidopsis thaliana GN=At2g01290 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.076e-11
Identity = 46/146 (31.51%), Postives = 75/146 (51.37%), Query Frame = 3 
Query:  279 YITSGMVVGLGSGQASAMAIEYMGRQLRAGALKDVIGIPTSVASANEAAVAGIPLDQYRDTSQXXXXXXXXXXXEEGTLVAVIGRQQPKGDESIIQEKSVLNAADKLVFMVSENQYKGVLDGS---VPVLVQPVNWMETAEEIDDL 707
            ++ SGMV+GLG+G  +  A++ +G  LR G L++++GIPTS  +  +A   GIPL    D               +  L  V GR       S+++EK +  A+ K V +V +++    + GS   +PV + P  W  TAE++  L
Sbjct:   47 FVESGMVLGLGTGSTAKHAVDRIGELLRQGKLENIVGIPTSKKTQEQALSLGIPLSDL-DAHPVIDLSIDGADEVDPFLNLVKGR-----GGSLLREKMIEGASKKFVVIVDDSKMVKHIGGSKLALPVEIVPFCWKFTAEKLRSL 186
The following BLAST results are available for this feature:
BLAST of CX675695 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RPIA_PROMA2.976e-1131.25Ribose-5-phosphate isomerase A OS=Prochlorococcus ... [more]
RPIA_ARATH5.076e-1131.51Probable ribose-5-phosphate isomerase OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_64B03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-64B03-C6-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675695 ID=CX675695; Name=CX675695; organism=Citrus sinensis; type=EST; length=710bp
GGGAAACCAAAAAGAGCAGCAAGGAGAACTAAAAAGAAAGGCAAAATATG
GCATTGATCTCAACGTCACCTTCATCATTGTCGTCGTCATCATCATCATC
AGCTGCAATCCCACATCGTTCATTTATTACTTTCAAGAGTAACAACAACA
AAGTTAGAATGAACAAAACAATGATTCGGGGAAGCAGTAGCAGCGACAGC
AGTGGCGCTCTTTCTAATGGCTCATCAGTGCTATTCCGTGCAGCCAAGCA
CACTGTAACATTCCTCATTGTTGACACTTACATTACCAGTGGCATGGTTG
TTGGGTTAGGGTCTGGCCAAGCTTCTGCAATGGCCATAGAATATATGGGT
CGCCAGCTTCGTGCTGGTGCTTTAAAAGATGTTATAGGGATACCCACGTC
TGTGGCTAGTGCTAATGAAGCAGCGGTGGCTGGGATTCCGTTGGATCAGT
ACCGAGATACTTCTCAAATTGATTTTGCATTTGATGATGCTGATATTATT
GAAGAGGGAACACTTGTTGCAGTCATTGGGCGTCAGCAACCGAAAGGAGA
TGAGTCCATAATCCAAGAGAAGTCTGTACTTAATGCCGCCGACAAACTGG
TTTTCATGGTATCAGAGAATCAGTATAAAGGTGTTCTAGATGGATCTGTT
CCAGTTCTAGTTCAACCTGTTAACTGGATGGAAACTGCAGAAGAGATTGA
TGATTTGTTT
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