CK939516

Overview
NameCK939516
Unique NameCK939516
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length898
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK939516_ssr695 microsatellite CK939516_ssr695:695..704. BLAST: Citrus ESTs to Prunus persica proteins V1
CK939516_ssr718 microsatellite CK939516_ssr718:718..735. BLAST: Citrus ESTs to Prunus persica proteins V1
CK939516_ssr736 microsatellite CK939516_ssr736:736..771. BLAST: Citrus ESTs to Prunus persica proteins V1
CK939516_ssr707 microsatellite CK939516_ssr707:707..718. BLAST: Citrus ESTs to Prunus persica proteins V1
CK939516_ssr719 microsatellite CK939516_ssr719:719..734. BLAST: Citrus ESTs to Prunus persica proteins V1
CK939516_ssr735 microsatellite CK939516_ssr735:735..770. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK939516 vs. ExPASy Swiss-Prot
Match: SNAK1_SOLTU (Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.087e-29
Identity = 53/68 (77.94%), Postives = 59/68 (86.76%), Query Frame = 1
Query:  394 EVSMAGSDFCDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECPCYRDLKNSKGKPKCP 597
            + +MAGS FCDSKC +RCSKAG  DRCLKYCGICC++C CVPSGTYG+K ECPCYRD KNSKGK KCP
Sbjct:   21 QTTMAGSSFCDSKCKLRCSKAGLADRCLKYCGICCEECKCVPSGTYGNKHECPCYRDKKNSKGKSKCP 88          
BLAST of CK939516 vs. ExPASy Swiss-Prot
Match: GAST1_SOLLC (Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.925e-15
Identity = 31/59 (52.54%), Postives = 38/59 (64.41%), Query Frame = 1
Query:  421 CDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECPCYRDLKNSKGKPKCP 597
            C  KC  RCSK   +  C+ +C  CC KC CVP+GTYG+K  CPCY + K  +G PKCP
Sbjct:   54 CQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP 112          
BLAST of CK939516 vs. ExPASy Swiss-Prot
Match: RSI1_SOLLC (Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.229e-13
Identity = 28/59 (47.46%), Postives = 35/59 (59.32%), Query Frame = 1
Query:  421 CDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECPCYRDLKNSKGKPKCP 597
            C  +C  RCS    +  C+ +C  CC  C CVP G YG+K  CPCY + K  +GKPKCP
Sbjct:   38 CKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCPCYNNWKTQEGKPKCP 96          
BLAST of CK939516 vs. ExPASy Swiss-Prot
Match: GASA4_ARATH (Gibberellin-regulated protein 4 OS=Arabidopsis thaliana GN=GASA4 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 3.027e-12
Identity = 28/59 (47.46%), Postives = 34/59 (57.63%), Query Frame = 1
Query:  421 CDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECPCYRDLKNSKGKPKCP 597
            C S+C  RC K      C+ +C  CC KC CVP G YG+K  C CY + K  +G PKCP
Sbjct:   48 CPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQEGGPKCP 106          
BLAST of CK939516 vs. ExPASy Swiss-Prot
Match: GASA1_ARATH (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana GN=GASA1 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.954e-12
Identity = 28/59 (47.46%), Postives = 35/59 (59.32%), Query Frame = 1
Query:  421 CDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECPCYRDLKNSKGKPKCP 597
            C S C  RC  + R   C + CG CC +C+CVP GTYG+ D+C CY  L    G+ KCP
Sbjct:   40 CGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98          
BLAST of CK939516 vs. ExPASy Swiss-Prot
Match: GASA2_ARATH (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.164e-12
Identity = 27/59 (45.76%), Postives = 35/59 (59.32%), Query Frame = 1
Query:  421 CDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECPCYRDLKNSKGKPKCP 597
            C  +C  RCSK+ R   CL+ C  CC +C+CVP GT G+   CPCY  +    G+ KCP
Sbjct:   41 CGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99          
BLAST of CK939516 vs. ExPASy Swiss-Prot
Match: GASA3_ARATH (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.744e-12
Identity = 27/59 (45.76%), Postives = 36/59 (61.02%), Query Frame = 1
Query:  421 CDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECPCYRDLKNSKGKPKCP 597
            C  +C  RCSK+ R + CL+ C  CC +C+CVP GT G+   CPCY  +    G+ KCP
Sbjct:   41 CGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99          
BLAST of CK939516 vs. ExPASy Swiss-Prot
Match: SNAK2_SOLTU (Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.962e-11
Identity = 27/59 (45.76%), Postives = 33/59 (55.93%), Query Frame = 1
Query:  421 CDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTYGHKDECPCYRDLKNSKGKPKCP 597
            C   CA RC  + R   C + CG CC +C+CVP GT G+ + CPCY  L     K KCP
Sbjct:   46 CGGACAARCRLSSRPRLCNRACGTCCARCNCVPPGTSGNTETCPCYASLTTHGNKRKCP 104          
The following BLAST results are available for this feature:
BLAST of CK939516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SNAK1_SOLTU2.087e-2977.94Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1[more]
GAST1_SOLLC2.925e-1552.54Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=... [more]
RSI1_SOLLC1.229e-1347.46Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=... [more]
GASA4_ARATH3.027e-1247.46Gibberellin-regulated protein 4 OS=Arabidopsis tha... [more]
GASA1_ARATH3.954e-1247.46Gibberellin-regulated protein 1 OS=Arabidopsis tha... [more]
GASA2_ARATH5.164e-1245.76Gibberellin-regulated protein 2 OS=Arabidopsis tha... [more]
GASA3_ARATH6.744e-1245.76Gibberellin-regulated protein 3 OS=Arabidopsis tha... [more]
SNAK2_SOLTU1.962e-1145.76Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionCGF1004749_F02 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939516 ID=CK939516; Name=CK939516; organism=Citrus sinensis; type=EST; length=898bp
GGGGATGAGTGTTTGCGATGAAATTATCTTAAATGGCTAAGCTTGGCCTT
TTGAGTTACTCCAAAGCCTTTATAAGCCACGCCGGTCCAGAAAACTCCTC
CACCAATACCCAATACCACTTGACAGTCTGTAATCCGCTGTTTGGGATTT
TAATTTGAAGTTGCTTGTAAGCACCTTCCAAACCCTTCACCGACTCCCTT
TTCCTCCACCATAAATAGCCCCTGCGTATGCCCTATTTGCTTAACAACGA
TCCATAAGCAAAGCATTACCGATTCTTTGGCTCTCTTTTTGATTAGCAAA
TTAACTACTCTTCTTCAGGAAATTCTGAGAAAAATGAAGCTGGCCTTGGT
TACATTCCTTCTCGTTTCTCTTGTCGTCACCTCCACTTTCTTTGAGGTCT
CGATGGCTGGTTCAGATTTCTGCGACTCAAAGTGTGCGGTGAGGTGCTCA
AAAGCAGGAAGGGAAGACAGGTGCCTGAAGTACTGTGGAATTTGCTGTGA
CAAGTGCCATTGTGTTCCATCTGGGACTTACGGGCACAAGGACGAGTGCC
CTTGCTACAGGGACCTCAAGAACTCCAAGGGCAAACCTAAGTGTCCTTAA
AATTACATTCTCTTTTCTTTATAAAGGACCCCTTCAAAGTTTGTTTATAT
GTAATTAAAATTAATTATCACCTTTTAACCATATTGTATTAGCCATATAT
ATATACATGTATGTATGTATATATATATATATATAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGACTTGCACATGCAGCTTGTAGAGAATACTA
AGGTCATAAAAAATTAAATGGAATTACTAAAGGGAATAATGACTTGGGTC
CTTTCGTTTGCTTGTGTATGGCGCGTCACACTATTACTATAAATAAGA
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