CK939512

Overview
NameCK939512
Unique NameCK939512
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length593
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8779 contig Csv1_Contig8779:57..649. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939512 vs. ExPASy Swiss-Prot
Match: TF2H2_DICDI (General transcription factor IIH subunit 2 OS=Dictyostelium discoideum GN=gtf2h2 PE=3 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 3.099e-47
Identity = 96/193 (49.74%), Postives = 123/193 (63.73%), Query Frame = 1
Query:   19 SVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFATANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHSARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKP--GLCVACAKCKKHFCLECDIYIHESLHNCPGCES 591
            S I ++AE++ICK + + T G+  V L+E HF E +M    PPP I +   A L++MGFPQ+      S C CH+++K   GY CPRC  + CELPTDC+IC L LVSSPH ARSYHHLF I  F+EV    LN        TC GC    LSS  K    L  +C +C++ FCL+CD++IHESLHNCPGCE+
Sbjct:  233 SFIHMAAELYICKAIAEQTNGTSKVILNEEHFNESLMLKCQPPPTIGKTEAA-LVEMGFPQQITSTVPSPCICHEKMKYS-GYICPRCGVKSCELPTDCQICNLSLVSSPHLARSYHHLFQIPLFNEVNWKELN-----KNVTCIGC----LSSSEKSILSLFFSCPRCQEIFCLDCDLFIHESLHNCPGCEN 414          
BLAST of CK939512 vs. ExPASy Swiss-Prot
Match: TF2H2_HUMAN (General transcription factor IIH subunit 2 OS=Homo sapiens GN=GTF2H2 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 5.844e-46
Identity = 94/205 (45.85%), Postives = 126/205 (61.46%), Query Frame = 1
Query:    4 SKIICSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFATANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRICGLQLVSSPHSARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLCVACAKCKKHFCLECDIYIHESLHNCPGC 585
            +KI  SVIGLSAE+ +C  L ++TGG+Y V LDESH+KEL+  H  PPPA +  +  +LI+MGFPQ           + S S+       + G+   GY CP+C+A+ CELP +C+ICGL LVS+PH ARSYHHLFP+  F E+     N  R      C+GCQ  L     K      CA C+  FC++CD+++H+SLH CPGC
Sbjct:  192 AKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPASSS-SECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGER-----FCYGCQGEL-----KDQHVYVCAVCQNVFCVDCDVFVHDSLHCCPGC 385          
BLAST of CK939512 vs. ExPASy Swiss-Prot
Match: T2H2L_HUMAN (General transcription factor IIH subunit 2-like protein OS=Homo sapiens GN=GTF2H2C PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 7.632e-46
Identity = 94/205 (45.85%), Postives = 126/205 (61.46%), Query Frame = 1
Query:    4 SKIICSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFATANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRICGLQLVSSPHSARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLCVACAKCKKHFCLECDIYIHESLHNCPGC 585
            +KI  SVIGLSAE+ +C  L ++TGG+Y V LDESH+KEL+  H  PPPA +  +  +LI+MGFPQ           + S S+       + G+   GY CP+C+A+ CELP +C+ICGL LVS+PH ARSYHHLFP+  F E+     N  R      C+GCQ  L     K      CA C+  FC++CD+++H+SLH CPGC
Sbjct:  192 AKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHLSPPPASSS-SECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGER-----FCYGCQGEL-----KDQHVYVCAVCQNVFCVDCDVFVHDSLHCCPGC 385          
BLAST of CK939512 vs. ExPASy Swiss-Prot
Match: TF2H2_BOVIN (General transcription factor IIH subunit 2 OS=Bos taurus GN=GTF2H2 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.221e-45
Identity = 91/205 (44.39%), Postives = 126/205 (61.46%), Query Frame = 1
Query:    4 SKIICSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFATANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRICGLQLVSSPHSARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLCVACAKCKKHFCLECDIYIHESLHNCPGC 585
            +KI  S+IGLSAE+ +C  L ++TGG+Y V LDESH+KEL+  H  PPPA +  +  +LI+MGFPQ           + S S+       + G+   GY CP+C+A+ CELP +C+ICGL LVS+PH ARSYHHLFP+  F E+ PL      +     C+ CQ  L     K      C+ C+  FC++CD+++H+SLH CPGC
Sbjct:  192 AKIRVSIIGLSAEVRVCTALARETGGTYHVILDESHYKELLTHHVSPPPASSN-SECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-PL----EEHNGERFCYACQGEL-----KDQHVYVCSVCQNVFCVDCDVFVHDSLHCCPGC 385          
BLAST of CK939512 vs. ExPASy Swiss-Prot
Match: TF2H2_RAT (General transcription factor IIH subunit 2 OS=Rattus norvegicus GN=Gtf2h2 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.455e-44
Identity = 92/206 (44.66%), Postives = 127/206 (61.65%), Query Frame = 1
Query:    4 SKIICSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFATANLIKMGFPQRA--------GEGSISICSC-HKEVKVGV---GYTCPRCKARVCELPTDCRICGLQLVSSPHSARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLCVACAKCKKHFCLECDIYIHESLHNCPGC 585
            +KI  SVIGLSAE+ +C  L ++TGG+Y V LDE+H+KEL+  H  PPPA +  +  +LI+MGFPQ           + S S+    +   + G+   GY CP+C+A+ CELP +C+ICGL LVS+PH ARSYHHLFP+  F E+ PL       +    C+GCQ  L     K      C  C+  FC++CD+++H+SLH CPGC
Sbjct:  192 AKIRVSVIGLSAEVRVCTVLARETGGTYHVILDETHYKELLARHVSPPPA-SSGSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDNNSTEPGLTLGGYFCPQCRAKYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-PL----EEYKGERFCYGCQGEL-----KDQHVYVCTVCRNVFCVDCDVFVHDSLHCCPGC 386          
BLAST of CK939512 vs. ExPASy Swiss-Prot
Match: TF2H2_MOUSE (General transcription factor IIH subunit 2 OS=Mus musculus GN=Gtf2h2 PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 4.188e-44
Identity = 90/206 (43.69%), Postives = 126/206 (61.17%), Query Frame = 1
Query:    4 SKIICSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFATANLIKMGFPQRA--------GEGSISICSC-HKEVKVGV---GYTCPRCKARVCELPTDCRICGLQLVSSPHSARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLCVACAKCKKHFCLECDIYIHESLHNCPGC 585
            +KI  SVIGLSAE+ +C  L ++TGG+Y V LDE+H+KEL+  H  PPPA +  +  +LI+MGFPQ           + S S+    +   + G+   GY CP+C+A+ CELP +C+ICGL LVS+PH ARSYHHLFP+  F E++         +    C+GCQ  L     K      C  C+  FC++CD+++H+SLH CPGC
Sbjct:  192 AKIRVSVIGLSAEVRVCTVLARETGGTYHVILDETHYKELLAHHVSPPPASSS-SECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDNNSTEPGLTLGGYFCPQCRAKYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEISL-----EEYKGERFCYGCQGEL-----KDQHVYVCTVCQNVFCVDCDVFVHDSLHCCPGC 386          
BLAST of CK939512 vs. ExPASy Swiss-Prot
Match: SSL1_YEAST (Suppressor of stem-loop protein 1 OS=Saccharomyces cerevisiae GN=SSL1 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 8.733e-42
Identity = 91/205 (44.39%), Postives = 115/205 (56.10%), Query Frame = 1
Query:    7 KIICSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELIMEHAPPPPAIAEFATANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHSARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL-LSSGNKPGLCVA-----CAKCKKHFCLECDIYIHESLHNCPGCES 591
            KI   V+GLSA++ ICK LC+ T       Y + LDE+H KEL  E   P P         L+KMGFP R  E + + CSCH ++  G GY CP C ++VC LPT C  C L L+ S H ARSYHHL P+  F EV        + RS   CF CQ    +   +K G  +      C  CK+ FC++CD++IHE LHNCPGCES
Sbjct:  258 KIRVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHLKELFNEAVTPLPVNKINKGFTLVKMGFPTRIFEDTPTFCSCHSKLVYG-GYFCPNCHSKVCSLPTVCPCCDLMLILSTHLARSYHHLMPLKTFAEVP----TTEKFRSED-CFSCQSRFPILKNHKNGKLLTSSRYRCEDCKQEFCVDCDVFIHEILHNCPGCES 456          
BLAST of CK939512 vs. ExPASy Swiss-Prot
Match: TFH47_SCHPO (TFIIH basal transcription factor complex p47 subunit OS=Schizosaccharomyces pombe GN=tfh47 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.647e-40
Identity = 85/200 (42.50%), Postives = 115/200 (57.50%), Query Frame = 1
Query:   22 VIGLSAEMFICKHLCQDTGGS----YSVALDESHFKELIMEHAPPPPA-IAEFATANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHSARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKP------GLCVACAKCKKHFCLECDIYIHESLHNCPGCE 588
            ++GL+AE+ ICK +C  T  S    Y V + E HF+EL++E   PP    A+   A+L+ MGFP +  E   S+C+CH     G G+ CPRCKA+VC LP +C  C L L+ S H ARSYHHLFP+  + E+ P   N P++   + CF CQ         P       +  AC  CK HFCL+CD++ HE LH C GC+
Sbjct:  224 IVGLAAEVAICKEICNKTNSSTKNAYGVVISEQHFRELLLESTIPPATDSAKTTDASLVMMGFPSKVVEQLPSLCACHSIPSRG-GFHCPRCKAKVCTLPIECPSCSLVLILSTHLARSYHHLFPLKNWSEI-PWSAN-PKS---THCFACQLPFPKPPVSPFDESTSSMRYACPSCKNHFCLDCDVFAHEQLHECYGCQ 417          
BLAST of CK939512 vs. ExPASy Swiss-Prot
Match: TF2H2_CAEEL (General transcription factor IIH subunit 2 OS=Caenorhabditis elegans GN=T16H12.4 PE=1 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 6.476e-37
Identity = 77/194 (39.69%), Postives = 109/194 (56.19%), Query Frame = 1
Query:   10 IICSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFATANLIKMGFPQRAGEGSISICSCHKEVK--VGVGYTCPRCKARVCELPTDCRICGLQLVSSPHSARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLCVACAKCKKHFCLECDIYIHESLHNCPGC 585
            I CS IGLSAEMF+CK + + T G YSVALD  H + L  +H  PP + A+ +  N I +GFP      + S C CH + K     G+ C +C AR C +P +C +C L LV++P  AR++ HL P++ F+++           +R  C+ C+  L   G +      C  C+  FCL+CD  +HESLH CPGC
Sbjct:  198 IRCSAIGLSAEMFVCKEMAKATKGEYSVALDPDHLQLLFSKHTLPPSS-AKSSECNAIHVGFPHHELITTRSFCVCHPDTKPISSRGFICTQCGARHCSIPAECPVCKLTLVAAPQLARAFRHLQPLSAFEQI---------EVTRGFCYACETRLSGEGFR------CGSCQLVFCLDCDTLLHESLHVCPGC 375          
The following BLAST results are available for this feature:
BLAST of CK939512 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
TF2H2_DICDI3.099e-4749.74General transcription factor IIH subunit 2 OS=Dict... [more]
TF2H2_HUMAN5.844e-4645.85General transcription factor IIH subunit 2 OS=Homo... [more]
T2H2L_HUMAN7.632e-4645.85General transcription factor IIH subunit 2-like pr... [more]
TF2H2_BOVIN2.221e-4544.39General transcription factor IIH subunit 2 OS=Bos ... [more]
TF2H2_RAT2.455e-4444.66General transcription factor IIH subunit 2 OS=Ratt... [more]
TF2H2_MOUSE4.188e-4443.69General transcription factor IIH subunit 2 OS=Mus ... [more]
SSL1_YEAST8.733e-4244.39Suppressor of stem-loop protein 1 OS=Saccharomyces... [more]
TFH47_SCHPO1.647e-4042.50TFIIH basal transcription factor complex p47 subun... [more]
TF2H2_CAEEL6.476e-3739.69General transcription factor IIH subunit 2 OS=Caen... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004749_E11 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939512 ID=CK939512; Name=CK939512; organism=Citrus sinensis; type=EST; length=593bp
GAATCTAAAATTATATGTTCGGTTATTGGTCTCTCTGCAGAAATGTTTAT
ATGCAAACATCTTTGCCAAGACACTGGTGGATCCTACTCGGTTGCATTGG
ATGAGTCCCACTTTAAGGAGTTGATAATGGAGCATGCACCCCCACCTCCA
GCTATAGCTGAATTTGCAACTGCCAATTTGATCAAGATGGGTTTCCCACA
AAGAGCAGGGGAGGGCTCTATTTCAATCTGTTCGTGTCATAAAGAAGTTA
AGGTTGGTGTGGGATACACTTGTCCAAGATGCAAAGCTCGTGTCTGTGAG
CTACCCACTGATTGTCGTATTTGTGGATTGCAACTTGTTTCTTCACCTCA
TTCGGCAAGGTCATATCATCATCTCTTTCCAATTGCACCATTCGATGAGG
TCACTCCGTTATGTTTAAATGATCCACGTAACAGATCGCGATCAACTTGT
TTTGGTTGCCAACAAAGTCTTCTCAGTTCTGGAAACAAACCTGGCCTTTG
TGTTGCTTGCGCAAAATGCAAAAAACACTTTTGCCTAGAGTGTGATATTT
ATATTCATGAAAGTTTGCACAACTGCCCAGGTTGTGAGAGCTT
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