CK939512
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK939512 vs. ExPASy Swiss-Prot
Match: TF2H2_DICDI (General transcription factor IIH subunit 2 OS=Dictyostelium discoideum GN=gtf2h2 PE=3 SV=2) HSP 1 Score: 187.963 bits (476), Expect = 3.099e-47 Identity = 96/193 (49.74%), Postives = 123/193 (63.73%), Query Frame = 1 Query: 19 SVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFATANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHSARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKP--GLCVACAKCKKHFCLECDIYIHESLHNCPGCES 591 S I ++AE++ICK + + T G+ V L+E HF E +M PPP I + A L++MGFPQ+ S C CH+++K GY CPRC + CELPTDC+IC L LVSSPH ARSYHHLF I F+EV LN TC GC LSS K L +C +C++ FCL+CD++IHESLHNCPGCE+ Sbjct: 233 SFIHMAAELYICKAIAEQTNGTSKVILNEEHFNESLMLKCQPPPTIGKTEAA-LVEMGFPQQITSTVPSPCICHEKMKYS-GYICPRCGVKSCELPTDCQICNLSLVSSPHLARSYHHLFQIPLFNEVNWKELN-----KNVTCIGC----LSSSEKSILSLFFSCPRCQEIFCLDCDLFIHESLHNCPGCEN 414
BLAST of CK939512 vs. ExPASy Swiss-Prot
Match: TF2H2_HUMAN (General transcription factor IIH subunit 2 OS=Homo sapiens GN=GTF2H2 PE=1 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 5.844e-46 Identity = 94/205 (45.85%), Postives = 126/205 (61.46%), Query Frame = 1 Query: 4 SKIICSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFATANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRICGLQLVSSPHSARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLCVACAKCKKHFCLECDIYIHESLHNCPGC 585 +KI SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA + + +LI+MGFPQ + S S+ + G+ GY CP+C+A+ CELP +C+ICGL LVS+PH ARSYHHLFP+ F E+ N R C+GCQ L K CA C+ FC++CD+++H+SLH CPGC Sbjct: 192 AKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPASSS-SECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGER-----FCYGCQGEL-----KDQHVYVCAVCQNVFCVDCDVFVHDSLHCCPGC 385
BLAST of CK939512 vs. ExPASy Swiss-Prot
Match: T2H2L_HUMAN (General transcription factor IIH subunit 2-like protein OS=Homo sapiens GN=GTF2H2C PE=2 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 7.632e-46 Identity = 94/205 (45.85%), Postives = 126/205 (61.46%), Query Frame = 1 Query: 4 SKIICSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFATANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRICGLQLVSSPHSARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLCVACAKCKKHFCLECDIYIHESLHNCPGC 585 +KI SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA + + +LI+MGFPQ + S S+ + G+ GY CP+C+A+ CELP +C+ICGL LVS+PH ARSYHHLFP+ F E+ N R C+GCQ L K CA C+ FC++CD+++H+SLH CPGC Sbjct: 192 AKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHLSPPPASSS-SECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGER-----FCYGCQGEL-----KDQHVYVCAVCQNVFCVDCDVFVHDSLHCCPGC 385
BLAST of CK939512 vs. ExPASy Swiss-Prot
Match: TF2H2_BOVIN (General transcription factor IIH subunit 2 OS=Bos taurus GN=GTF2H2 PE=2 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 2.221e-45 Identity = 91/205 (44.39%), Postives = 126/205 (61.46%), Query Frame = 1 Query: 4 SKIICSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFATANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRICGLQLVSSPHSARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLCVACAKCKKHFCLECDIYIHESLHNCPGC 585 +KI S+IGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA + + +LI+MGFPQ + S S+ + G+ GY CP+C+A+ CELP +C+ICGL LVS+PH ARSYHHLFP+ F E+ PL + C+ CQ L K C+ C+ FC++CD+++H+SLH CPGC Sbjct: 192 AKIRVSIIGLSAEVRVCTALARETGGTYHVILDESHYKELLTHHVSPPPASSN-SECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-PL----EEHNGERFCYACQGEL-----KDQHVYVCSVCQNVFCVDCDVFVHDSLHCCPGC 385
BLAST of CK939512 vs. ExPASy Swiss-Prot
Match: TF2H2_RAT (General transcription factor IIH subunit 2 OS=Rattus norvegicus GN=Gtf2h2 PE=2 SV=1) HSP 1 Score: 178.333 bits (451), Expect = 2.455e-44 Identity = 92/206 (44.66%), Postives = 127/206 (61.65%), Query Frame = 1 Query: 4 SKIICSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFATANLIKMGFPQRA--------GEGSISICSC-HKEVKVGV---GYTCPRCKARVCELPTDCRICGLQLVSSPHSARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLCVACAKCKKHFCLECDIYIHESLHNCPGC 585 +KI SVIGLSAE+ +C L ++TGG+Y V LDE+H+KEL+ H PPPA + + +LI+MGFPQ + S S+ + + G+ GY CP+C+A+ CELP +C+ICGL LVS+PH ARSYHHLFP+ F E+ PL + C+GCQ L K C C+ FC++CD+++H+SLH CPGC Sbjct: 192 AKIRVSVIGLSAEVRVCTVLARETGGTYHVILDETHYKELLARHVSPPPA-SSGSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDNNSTEPGLTLGGYFCPQCRAKYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-PL----EEYKGERFCYGCQGEL-----KDQHVYVCTVCRNVFCVDCDVFVHDSLHCCPGC 386
BLAST of CK939512 vs. ExPASy Swiss-Prot
Match: TF2H2_MOUSE (General transcription factor IIH subunit 2 OS=Mus musculus GN=Gtf2h2 PE=1 SV=1) HSP 1 Score: 177.563 bits (449), Expect = 4.188e-44 Identity = 90/206 (43.69%), Postives = 126/206 (61.17%), Query Frame = 1 Query: 4 SKIICSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFATANLIKMGFPQRA--------GEGSISICSC-HKEVKVGV---GYTCPRCKARVCELPTDCRICGLQLVSSPHSARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLCVACAKCKKHFCLECDIYIHESLHNCPGC 585 +KI SVIGLSAE+ +C L ++TGG+Y V LDE+H+KEL+ H PPPA + + +LI+MGFPQ + S S+ + + G+ GY CP+C+A+ CELP +C+ICGL LVS+PH ARSYHHLFP+ F E++ + C+GCQ L K C C+ FC++CD+++H+SLH CPGC Sbjct: 192 AKIRVSVIGLSAEVRVCTVLARETGGTYHVILDETHYKELLAHHVSPPPASSS-SECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDNNSTEPGLTLGGYFCPQCRAKYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEISL-----EEYKGERFCYGCQGEL-----KDQHVYVCTVCQNVFCVDCDVFVHDSLHCCPGC 386
BLAST of CK939512 vs. ExPASy Swiss-Prot
Match: SSL1_YEAST (Suppressor of stem-loop protein 1 OS=Saccharomyces cerevisiae GN=SSL1 PE=1 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 8.733e-42 Identity = 91/205 (44.39%), Postives = 115/205 (56.10%), Query Frame = 1 Query: 7 KIICSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELIMEHAPPPPAIAEFATANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHSARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL-LSSGNKPGLCVA-----CAKCKKHFCLECDIYIHESLHNCPGCES 591 KI V+GLSA++ ICK LC+ T Y + LDE+H KEL E P P L+KMGFP R E + + CSCH ++ G GY CP C ++VC LPT C C L L+ S H ARSYHHL P+ F EV + RS CF CQ + +K G + C CK+ FC++CD++IHE LHNCPGCES Sbjct: 258 KIRVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHLKELFNEAVTPLPVNKINKGFTLVKMGFPTRIFEDTPTFCSCHSKLVYG-GYFCPNCHSKVCSLPTVCPCCDLMLILSTHLARSYHHLMPLKTFAEVP----TTEKFRSED-CFSCQSRFPILKNHKNGKLLTSSRYRCEDCKQEFCVDCDVFIHEILHNCPGCES 456
BLAST of CK939512 vs. ExPASy Swiss-Prot
Match: TFH47_SCHPO (TFIIH basal transcription factor complex p47 subunit OS=Schizosaccharomyces pombe GN=tfh47 PE=1 SV=1) HSP 1 Score: 165.622 bits (418), Expect = 1.647e-40 Identity = 85/200 (42.50%), Postives = 115/200 (57.50%), Query Frame = 1 Query: 22 VIGLSAEMFICKHLCQDTGGS----YSVALDESHFKELIMEHAPPPPA-IAEFATANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHSARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKP------GLCVACAKCKKHFCLECDIYIHESLHNCPGCE 588 ++GL+AE+ ICK +C T S Y V + E HF+EL++E PP A+ A+L+ MGFP + E S+C+CH G G+ CPRCKA+VC LP +C C L L+ S H ARSYHHLFP+ + E+ P N P++ + CF CQ P + AC CK HFCL+CD++ HE LH C GC+ Sbjct: 224 IVGLAAEVAICKEICNKTNSSTKNAYGVVISEQHFRELLLESTIPPATDSAKTTDASLVMMGFPSKVVEQLPSLCACHSIPSRG-GFHCPRCKAKVCTLPIECPSCSLVLILSTHLARSYHHLFPLKNWSEI-PWSAN-PKS---THCFACQLPFPKPPVSPFDESTSSMRYACPSCKNHFCLDCDVFAHEQLHECYGCQ 417
BLAST of CK939512 vs. ExPASy Swiss-Prot
Match: TF2H2_CAEEL (General transcription factor IIH subunit 2 OS=Caenorhabditis elegans GN=T16H12.4 PE=1 SV=3) HSP 1 Score: 153.68 bits (387), Expect = 6.476e-37 Identity = 77/194 (39.69%), Postives = 109/194 (56.19%), Query Frame = 1 Query: 10 IICSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFATANLIKMGFPQRAGEGSISICSCHKEVK--VGVGYTCPRCKARVCELPTDCRICGLQLVSSPHSARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLCVACAKCKKHFCLECDIYIHESLHNCPGC 585 I CS IGLSAEMF+CK + + T G YSVALD H + L +H PP + A+ + N I +GFP + S C CH + K G+ C +C AR C +P +C +C L LV++P AR++ HL P++ F+++ +R C+ C+ L G + C C+ FCL+CD +HESLH CPGC Sbjct: 198 IRCSAIGLSAEMFVCKEMAKATKGEYSVALDPDHLQLLFSKHTLPPSS-AKSSECNAIHVGFPHHELITTRSFCVCHPDTKPISSRGFICTQCGARHCSIPAECPVCKLTLVAAPQLARAFRHLQPLSAFEQI---------EVTRGFCYACETRLSGEGFR------CGSCQLVFCLDCDTLLHESLHVCPGC 375 The following BLAST results are available for this feature:
BLAST of CK939512 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CK939512 ID=CK939512; Name=CK939512; organism=Citrus sinensis; type=EST; length=593bpback to top |