CK939509

Overview
NameCK939509
Unique NameCK939509
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length345
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12826 contig Csv1_Contig12826:1133..1477. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939509 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.539e-19
Identity = 43/60 (71.67%), Postives = 52/60 (86.67%), Query Frame = 2
Query:    5 LAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 184
            LAKK+P V FLKVDVDELKSVA +WAVEAMPTF+  KEGK+++++VGAKKDELQ  + KH
Sbjct:   52 LAKKMPTVTFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDELQQTIAKH 111          
BLAST of CK939509 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.316e-19
Identity = 43/60 (71.67%), Postives = 52/60 (86.67%), Query Frame = 2
Query:    5 LAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 184
            LAKKLP V FLKVDVDELK+VA EWAVE+MPTF+  KEGK+++++VGAKKDELQ  + KH
Sbjct:   53 LAKKLPNVTFLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTIAKH 112          
BLAST of CK939509 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.316e-19
Identity = 42/60 (70.00%), Postives = 52/60 (86.67%), Query Frame = 2
Query:    5 LAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 184
            LAKKLP V+FLKVD DELKSVA +WA++AMPTF+  KEGK+L+++VGAKKDELQ  + KH
Sbjct:   53 LAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKH 112          
BLAST of CK939509 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.253e-18
Identity = 41/60 (68.33%), Postives = 52/60 (86.67%), Query Frame = 2
Query:    5 LAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 184
            +AKK+P VIFLKVDVDELK+V+ EW+VEAMPTFV  K+GK ++R+VGAKK+ELQ  + KH
Sbjct:   59 IAKKMPHVIFLKVDVDELKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEELQQTIVKH 118          
BLAST of CK939509 vs. ExPASy Swiss-Prot
Match: TRXH_PICMA (Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.905e-15
Identity = 35/57 (61.40%), Postives = 47/57 (82.46%), Query Frame = 2
Query:    5 LAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAV 175
            L+KK P + FLKVDVDEL+ VA+EW VEAMPTF+  K+GK ++++VGAKKD+L+  V
Sbjct:   51 LSKKFPEIFFLKVDVDELRDVAQEWDVEAMPTFIFIKDGKAVDKVVGAKKDDLERKV 107          
BLAST of CK939509 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 39/60 (65.00%), Postives = 47/60 (78.33%), Query Frame = 2
Query:    5 LAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 184
            LAKK P V F KVDVD+LK VAEE+ VEAMP+FV+ KEG+ +ERIVGA+KDEL   +  H
Sbjct:   52 LAKKFPHVAFFKVDVDDLKDVAEEYKVEAMPSFVILKEGQEVERIVGARKDELLHKIAVH 111          
BLAST of CK939509 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 1.442e-14
Identity = 38/60 (63.33%), Postives = 47/60 (78.33%), Query Frame = 2
Query:    5 LAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 184
            LAKK PA +FLKVDVDELK +AE+++VEAMPTF+  KEG V +R+VGA K+EL   V  H
Sbjct:   65 LAKKFPAAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTTKVGLH 124          
BLAST of CK939509 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSJ (Thioredoxin H-type OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.211e-14
Identity = 35/59 (59.32%), Postives = 46/59 (77.97%), Query Frame = 2
Query:    8 AKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 184
            AKK P  +FLKVDVDELK VAE++ VEAMPTF+  K+G   +++VGA+KD+LQ  + KH
Sbjct:   54 AKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKH 112          
BLAST of CK939509 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.211e-14
Identity = 35/59 (59.32%), Postives = 46/59 (77.97%), Query Frame = 2
Query:    8 AKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 184
            AKK P  +FLKVDVDELK VAE++ VEAMPTF+  K+G   +++VGA+KD+LQ  + KH
Sbjct:   54 AKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKH 112          
BLAST of CK939509 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.154e-14
Identity = 34/60 (56.67%), Postives = 47/60 (78.33%), Query Frame = 2
Query:    5 LAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 184
            +AKK   V+F K+DVDEL++VA+E+ VEAMPTFV  KEG +++R+VGA KDE+   + KH
Sbjct:   52 MAKKFTNVVFFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKH 111          
The following BLAST results are available for this feature:
BLAST of CK939509 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
TRXH2_TOBAC2.539e-1971.67Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH_RICCO3.316e-1971.67Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH1_ARATH3.316e-1970.00Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRXH1_TOBAC6.253e-1868.33Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH_PICMA2.905e-1561.40Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 S... [more]
TRXH_FAGES1.104e-1465.00Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]
TRXH_WHEAT1.442e-1463.33Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]
TRXH_ORYSJ3.211e-1459.32Thioredoxin H-type OS=Oryza sativa subsp. japonica... [more]
TRXH_ORYSI3.211e-1459.32Thioredoxin H-type OS=Oryza sativa subsp. indica G... [more]
TRXH5_ARATH7.154e-1456.67Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_E06 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939509 ID=CK939509; Name=CK939509; organism=Citrus sinensis; type=EST; length=345bp
GGGATTGGCGAAGAAGCTGCCCGCTGTCATATTCTTGAAGGTGGATGTTG
ATGAATTGAAGTCCGTCGCTGAGGAATGGGCTGTGGAAGCCATGCCGACC
TTTGTACTGACGAAAGAAGGCAAAGTCCTGGAGAGGATTGTGGGAGCGAA
GAAAGATGAGCTGCAGCTGGCTGTCGAAAAGCACGCAACAACTGTTGAGA
ATGCAACTACTGCTAATGCTTGATTGATGCGTACATGAATCTCATTGGTC
TTTTATTGTAAGGGGTGTGTTTGGGGTTGCTTAATGGAAGAATATGGTAC
CATGTTTAACAGGCCTGTATATACGAATAAGTGACANNNTTCTAG
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