CK939508
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939508 vs. ExPASy Swiss-Prot
Match: PP372_ARATH (Pentatricopeptide repeat-containing protein At5g09450, mitochondrial OS=Arabidopsis thaliana GN=At5g09450 PE=2 SV=1) HSP 1 Score: 228.794 bits (582), Expect = 2.365e-59 Identity = 109/170 (64.12%), Postives = 145/170 (85.29%), Query Frame = 2 Query: 224 SDGKDDLKSRIFRISLPKRSAINVIQRWVSEGNQATVSELRRILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHSYAGAKWTEKAEELFERVKQS-NLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKR 730 S+ KDDLKSRIFR+ LPKRSA V+++W+ EGNQ T++ELR I KELR+++RYKHALE++EWMV H+E +SD+DYA+RIDL++KVFGI + ERYFEGL + +KT+ETYT+LLH+YA +K TE+AE LF+R+ +S +L+F A+ YNEMMTLYMSVGQVEKV V+E +K+ Sbjct: 51 SEEKDDLKSRIFRLRLPKRSATTVLEKWIGEGNQMTINELREISKELRRTRRYKHALEVTEWMVQHEESKISDADYASRIDLISKVFGIDAAERYFEGLDIDSKTAETYTSLLHAYAASKQTERAEALFKRIIESDSLTFGAITYNEMMTLYMSVGQVEKVPEVIEVLKQ 220
BLAST of CK939508 vs. ExPASy Swiss-Prot
Match: PP302_ARATH (Pentatricopeptide repeat-containing protein At4g02820, mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 4.062e-35 Identity = 71/166 (42.77%), Postives = 109/166 (65.66%), Query Frame = 2 Query: 230 GKDDLKSRIFRISLPKRSAINVIQRWVSEGNQATVSELRRILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHSYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 727 G+D L R+ + KRSA+ I++W EG+ EL RI++ELRK +RYKHALEI EWMV ++ L DYA +DL++K+ G++S E++FE +P + T+LLHSY K ++KAE LFE++ + + L YN M+++Y+S GQ EKV ++++E+K Sbjct: 59 GRDTLGGRLLSLVYTKRSAVVTIRKWKEEGHSVRKYELNRIVRELRKIKRYKHALEICEWMVVQEDIKLQAGDYAVHLDLISKIRGLNSAEKFFEDMPDQMRGHAACTSLLHSYVQNKLSDKAEALFEKMGECGFLKSCLPYNHMLSMYISRGQFEKVPVLIKELK 224
BLAST of CK939508 vs. ExPASy Swiss-Prot
Match: PP166_ARATH (Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.653e-28 Identity = 63/167 (37.72%), Postives = 96/167 (57.49%), Query Frame = 2 Query: 227 DGKDDLKSRIFRISLPKRSAINVIQRWVSEGNQATVSELRRILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHSYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 727 D D L+ R+ R P S I V+ W+ +GN SEL I+K LRK R+ HAL+IS+WM H+ +S+ D A R+DL+ KV G+ E++FE +P+ + Y ALL+ YA K KAE++F+ +K+ L YN M+ LY+ G+ V ++ E++ Sbjct: 35 DPYDTLQRRVARSGDPSASIIKVLDGWLDQGNLVKTSELHSIIKMLRKFSRFSHALQISDWMSEHRVHEISEGDVAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYASKKVLHKAEQVFQEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREME 201
BLAST of CK939508 vs. ExPASy Swiss-Prot
Match: PP334_ARATH (Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 5.317e-27 Identity = 66/170 (38.82%), Postives = 102/170 (60.00%), Query Frame = 2 Query: 218 SNSDGKDDLKSRIFRISLPKRSAINVIQRWVSEGNQATVSELRRILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHSYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 727 +N K L S+I + PK S +Q WV G + +V+EL RI+ +LR+ +R+ HALE+S+WM V S +++A +DL+ +V+G + E YFE L K +TY ALL+ Y + EK+ FE++K+ ++L YN +M LY ++GQ EKV V+EE+K Sbjct: 19 TNRVKKTTLYSKISPLGDPKSSVYPELQNWVQCGKKVSVAELIRIVHDLRRRKRFLHALEVSKWMNETGVCVFSPTEHAVHLDLIGRVYGFVTAEEYFENLKEQYKNDKTYGALLNCYVRQQNVEKSLLHFEKMKEMGFVTSSLTYNNIMCLYTNIGQHEKVPKVLEEMK 188
BLAST of CK939508 vs. ExPASy Swiss-Prot
Match: PPR3_ARATH (Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2) HSP 1 Score: 108.997 bits (271), Expect = 2.731e-23 Identity = 63/161 (39.13%), Postives = 95/161 (59.01%), Query Frame = 2 Query: 251 RIFRISLPKRSAINVIQRWVSEGNQATVSELRRILKELRKSQRYKHALEISEWMVTHKE-FVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHSYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKR 730 +I + P+ A +V+ +W G + T EL R++KELRK +R ALE+ +WM E F LS SD A ++DL+ KV GI E +F LP + K Y +LL++Y AK EKAE L ++ + + L +N MMTLYM++ + +KV +V E+K+ Sbjct: 72 KISLMEKPELGAASVLNQWEKAGRKLTKWELCRVVKELRKYKRANQALEVYDWMNNRGERFRLSASDAAIQLDLIGKVRGIPDAEEFFLQLPENFKDRRVYGSLLNAYVRAKSREKAEALLNTMRDKGYALHPLPFNVMMTLYMNLREYDKVDAMVFEMKQ 232
BLAST of CK939508 vs. ExPASy Swiss-Prot
Match: PP400_ARATH (Pentatricopeptide repeat-containing protein At5g27460 OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.355e-22 Identity = 65/176 (36.93%), Postives = 96/176 (54.55%), Query Frame = 2 Query: 212 ETSNSDGKDDLKSRIFRISLPKRSAINVIQRWVSEGNQATVSELRRILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKT----SETYTALLHSYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 727 +TS+ ++ LK I R + P+RS +++Q + G+ ++SELR I K L +S RY AL++ EWM K+ S D A R+DL+ K G+ GE YFE L S+ + Y LL +Y K ++AE L E++ +NEMM LY + GQ EKV +VV +K Sbjct: 31 DTSSVANRNSLKE-ILRKNGPRRSVTSLLQERIDSGHAVSLSELRLISKRLIRSNRYDLALQMMEWMENQKDIEFSVYDIALRLDLIIKTHGLKQGEEYFEKLLHSSVSMRVAKSAYLPLLRAYVKNKMVKEAEALMEKLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMK 205
BLAST of CK939508 vs. ExPASy Swiss-Prot
Match: PPR61_ARATH (Putative pentatricopeptide repeat-containing protein At1g28020 OS=Arabidopsis thaliana GN=At1g28020 PE=3 SV=2) HSP 1 Score: 104.375 bits (259), Expect = 6.726e-22 Identity = 56/148 (37.84%), Postives = 89/148 (60.14%), Query Frame = 2 Query: 287 INVIQRWVSEGNQATVSELRRILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHSYAGA-KWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 727 I V+++W +GNQ S +R I+K+LR S + AL++SEWM K L D+A R+ L+ V G+ E++FE +P +A+ YT+LL+SYA + K KAE F++++ L + YN MM+LY ++ EKV ++ E+K Sbjct: 53 IPVLEQWRQQGNQVNPSHVRVIIKKLRDSDQSLQALQVSEWMSKEKICNLIPEDFAARLHLIENVVGLEEAEKFFESIPKNARGDSVYTSLLNSYARSDKTLCKAEATFQKMRDLGLLLRPVPYNAMMSLYSALKNREKVEELLLEMK 200 HSP 2 Score: 77.7962 bits (190), Expect = 6.742e-14 Identity = 40/141 (28.37%), Postives = 79/141 (56.03%), Query Frame = 2 Query: 293 VIQRWVSEGNQATVSELRRILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHSYAGA--KWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVAL 709 ++++W G+Q S+L+ ++K LR S+++ AL++SEWM + L DYA R+ L V G+ E+YFE +P + K Y ALL SYA + +E+ ++++N+ + + N ++ +Y + +++ + + Sbjct: 390 LLEQW---GDQMKPSDLKCLIKNLRDSKQFSKALQVSEWMGEKQVCNLYLEDYAARLYLTENVLGLEEAEKYFENIPENMKDYSVYVALLSSYAKSDKNLGNMVDEILREMEENNVDPDLITVNHVLKVYAAESKIQAMEM 527
BLAST of CK939508 vs. ExPASy Swiss-Prot
Match: PPR4_ARATH (Pentatricopeptide repeat-containing protein At1g02370, mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 4.081e-19 Identity = 57/165 (34.55%), Postives = 92/165 (55.76%), Query Frame = 2 Query: 239 DLKSRIFRISLPKRSAINVIQRWVSEGNQATVSELRRILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSE-TYTALLHSYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKR 730 +L ++ +S+ + + +++ EG +L R K LRK +R +HA EI +WM K S SD+A +DL+ K G+ + E YF L SAK + TY AL++ Y EKA+ FE + + N N+L +N MM++YM + Q EKV ++V+ +K+ Sbjct: 72 ELYKKLSMLSVTGGTVAETLNQFIMEGITVRKDDLFRCAKTLRKFRRPQHAFEIFDWMEKRK-MTFSVSDHAICLDLIGKTKGLEAAENYFNNLDPSAKNHQSTYGALMNCYCVELEEEKAKAHFEIMDELNFVNNSLPFNNMMSMYMRLSQPEKVPVLVDAMKQ 235
BLAST of CK939508 vs. ExPASy Swiss-Prot
Match: PP300_ARATH (Pentatricopeptide repeat-containing protein At4g01990, mitochondrial OS=Arabidopsis thaliana GN=At4g01990 PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 9.091e-19 Identity = 55/144 (38.19%), Postives = 81/144 (56.25%), Query Frame = 2 Query: 296 IQRWVSEGNQATVSELRRILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHSYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 727 + ++V EG +L R K+LRK ++ + ALEI EWM KE + SD+A R++L+ K G+ + E YF L S K TY +LL+ Y K KA+ FE + N N+L +N +M +YM +GQ EKV +V +K Sbjct: 60 LNQFVMEGVPVKKHDLIRYAKDLRKFRQPQRALEIFEWM-ERKEIAFTGSDHAIRLNLIAKSKGLEAAETYFNSLDDSIKNQSTYGSLLNCYCVEKEEVKAKAHFENMVDLNHVSNSLPFNNLMAMYMGLGQPEKVPALVVAMK 202
BLAST of CK939508 vs. ExPASy Swiss-Prot
Match: PP135_ARATH (Pentatricopeptide repeat-containing protein At1g80270, mitochondrial OS=Arabidopsis thaliana GN=At1g80270 PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.005e-17 Identity = 47/163 (28.83%), Postives = 92/163 (56.44%), Query Frame = 2 Query: 245 KSRIFR--ISLPKRSAINVIQRWVSEGNQATVSELRRILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHSYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG--QVEKVALVVEE 721 +S +F+ +S P S + + +WV EGN+ T E+ + + +LR+ + Y AL++SEW+ +K+ +++ DYA+R+DL K+ G+ GE + +P S K Y LL + A +K+E +F ++K + ++M+ L+ + ++ V L++E+ Sbjct: 129 QSELFKTIVSAPGLSIGSALDKWVEEGNEITRVEIAKAMLQLRRRRMYGRALQMSEWLEANKKIEMTERDYASRLDLTVKIRGLEKGEACMQKIPKSFKGEVLYRTLLANCVAAGNVKKSELVFNKMKDLGFPLSGFTCDQMLLLHKRIDRKKIADVLLLMEK 291 The following BLAST results are available for this feature:
BLAST of CK939508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 14
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939508 ID=CK939508; Name=CK939508; organism=Citrus sinensis; type=EST; length=734bpback to top |