CK939508

Overview
NameCK939508
Unique NameCK939508
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939508 vs. ExPASy Swiss-Prot
Match: PP372_ARATH (Pentatricopeptide repeat-containing protein At5g09450, mitochondrial OS=Arabidopsis thaliana GN=At5g09450 PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.365e-59
Identity = 109/170 (64.12%), Postives = 145/170 (85.29%), Query Frame = 2
Query:  224 SDGKDDLKSRIFRISLPKRSAINVIQRWVSEGNQATVSELRRILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHSYAGAKWTEKAEELFERVKQS-NLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKR 730
            S+ KDDLKSRIFR+ LPKRSA  V+++W+ EGNQ T++ELR I KELR+++RYKHALE++EWMV H+E  +SD+DYA+RIDL++KVFGI + ERYFEGL + +KT+ETYT+LLH+YA +K TE+AE LF+R+ +S +L+F A+ YNEMMTLYMSVGQVEKV  V+E +K+
Sbjct:   51 SEEKDDLKSRIFRLRLPKRSATTVLEKWIGEGNQMTINELREISKELRRTRRYKHALEVTEWMVQHEESKISDADYASRIDLISKVFGIDAAERYFEGLDIDSKTAETYTSLLHAYAASKQTERAEALFKRIIESDSLTFGAITYNEMMTLYMSVGQVEKVPEVIEVLKQ 220          
BLAST of CK939508 vs. ExPASy Swiss-Prot
Match: PP302_ARATH (Pentatricopeptide repeat-containing protein At4g02820, mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.062e-35
Identity = 71/166 (42.77%), Postives = 109/166 (65.66%), Query Frame = 2
Query:  230 GKDDLKSRIFRISLPKRSAINVIQRWVSEGNQATVSELRRILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHSYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 727
            G+D L  R+  +   KRSA+  I++W  EG+     EL RI++ELRK +RYKHALEI EWMV  ++  L   DYA  +DL++K+ G++S E++FE +P   +     T+LLHSY   K ++KAE LFE++ +     + L YN M+++Y+S GQ EKV ++++E+K
Sbjct:   59 GRDTLGGRLLSLVYTKRSAVVTIRKWKEEGHSVRKYELNRIVRELRKIKRYKHALEICEWMVVQEDIKLQAGDYAVHLDLISKIRGLNSAEKFFEDMPDQMRGHAACTSLLHSYVQNKLSDKAEALFEKMGECGFLKSCLPYNHMLSMYISRGQFEKVPVLIKELK 224          
BLAST of CK939508 vs. ExPASy Swiss-Prot
Match: PP166_ARATH (Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.653e-28
Identity = 63/167 (37.72%), Postives = 96/167 (57.49%), Query Frame = 2
Query:  227 DGKDDLKSRIFRISLPKRSAINVIQRWVSEGNQATVSELRRILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHSYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 727
            D  D L+ R+ R   P  S I V+  W+ +GN    SEL  I+K LRK  R+ HAL+IS+WM  H+   +S+ D A R+DL+ KV G+   E++FE +P+  +    Y ALL+ YA  K   KAE++F+ +K+       L YN M+ LY+  G+   V  ++ E++
Sbjct:   35 DPYDTLQRRVARSGDPSASIIKVLDGWLDQGNLVKTSELHSIIKMLRKFSRFSHALQISDWMSEHRVHEISEGDVAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYASKKVLHKAEQVFQEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREME 201          
BLAST of CK939508 vs. ExPASy Swiss-Prot
Match: PP334_ARATH (Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.317e-27
Identity = 66/170 (38.82%), Postives = 102/170 (60.00%), Query Frame = 2
Query:  218 SNSDGKDDLKSRIFRISLPKRSAINVIQRWVSEGNQATVSELRRILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHSYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 727
            +N   K  L S+I  +  PK S    +Q WV  G + +V+EL RI+ +LR+ +R+ HALE+S+WM      V S +++A  +DL+ +V+G  + E YFE L    K  +TY ALL+ Y   +  EK+   FE++K+     ++L YN +M LY ++GQ EKV  V+EE+K
Sbjct:   19 TNRVKKTTLYSKISPLGDPKSSVYPELQNWVQCGKKVSVAELIRIVHDLRRRKRFLHALEVSKWMNETGVCVFSPTEHAVHLDLIGRVYGFVTAEEYFENLKEQYKNDKTYGALLNCYVRQQNVEKSLLHFEKMKEMGFVTSSLTYNNIMCLYTNIGQHEKVPKVLEEMK 188          
BLAST of CK939508 vs. ExPASy Swiss-Prot
Match: PPR3_ARATH (Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.731e-23
Identity = 63/161 (39.13%), Postives = 95/161 (59.01%), Query Frame = 2
Query:  251 RIFRISLPKRSAINVIQRWVSEGNQATVSELRRILKELRKSQRYKHALEISEWMVTHKE-FVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHSYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKR 730
            +I  +  P+  A +V+ +W   G + T  EL R++KELRK +R   ALE+ +WM    E F LS SD A ++DL+ KV GI   E +F  LP + K    Y +LL++Y  AK  EKAE L   ++    + + L +N MMTLYM++ + +KV  +V E+K+
Sbjct:   72 KISLMEKPELGAASVLNQWEKAGRKLTKWELCRVVKELRKYKRANQALEVYDWMNNRGERFRLSASDAAIQLDLIGKVRGIPDAEEFFLQLPENFKDRRVYGSLLNAYVRAKSREKAEALLNTMRDKGYALHPLPFNVMMTLYMNLREYDKVDAMVFEMKQ 232          
BLAST of CK939508 vs. ExPASy Swiss-Prot
Match: PP400_ARATH (Pentatricopeptide repeat-containing protein At5g27460 OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.355e-22
Identity = 65/176 (36.93%), Postives = 96/176 (54.55%), Query Frame = 2
Query:  212 ETSNSDGKDDLKSRIFRISLPKRSAINVIQRWVSEGNQATVSELRRILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKT----SETYTALLHSYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 727
            +TS+   ++ LK  I R + P+RS  +++Q  +  G+  ++SELR I K L +S RY  AL++ EWM   K+   S  D A R+DL+ K  G+  GE YFE L  S+ +       Y  LL +Y   K  ++AE L E++           +NEMM LY + GQ EKV +VV  +K
Sbjct:   31 DTSSVANRNSLKE-ILRKNGPRRSVTSLLQERIDSGHAVSLSELRLISKRLIRSNRYDLALQMMEWMENQKDIEFSVYDIALRLDLIIKTHGLKQGEEYFEKLLHSSVSMRVAKSAYLPLLRAYVKNKMVKEAEALMEKLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMK 205          
BLAST of CK939508 vs. ExPASy Swiss-Prot
Match: PPR61_ARATH (Putative pentatricopeptide repeat-containing protein At1g28020 OS=Arabidopsis thaliana GN=At1g28020 PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 6.726e-22
Identity = 56/148 (37.84%), Postives = 89/148 (60.14%), Query Frame = 2
Query:  287 INVIQRWVSEGNQATVSELRRILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHSYAGA-KWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 727
            I V+++W  +GNQ   S +R I+K+LR S +   AL++SEWM   K   L   D+A R+ L+  V G+   E++FE +P +A+    YT+LL+SYA + K   KAE  F++++   L    + YN MM+LY ++   EKV  ++ E+K
Sbjct:   53 IPVLEQWRQQGNQVNPSHVRVIIKKLRDSDQSLQALQVSEWMSKEKICNLIPEDFAARLHLIENVVGLEEAEKFFESIPKNARGDSVYTSLLNSYARSDKTLCKAEATFQKMRDLGLLLRPVPYNAMMSLYSALKNREKVEELLLEMK 200          

HSP 2 Score: 77.7962 bits (190), Expect = 6.742e-14
Identity = 40/141 (28.37%), Postives = 79/141 (56.03%), Query Frame = 2
Query:  293 VIQRWVSEGNQATVSELRRILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHSYAGA--KWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVAL 709
            ++++W   G+Q   S+L+ ++K LR S+++  AL++SEWM   +   L   DYA R+ L   V G+   E+YFE +P + K    Y ALL SYA +        +E+   ++++N+  + +  N ++ +Y +  +++ + +
Sbjct:  390 LLEQW---GDQMKPSDLKCLIKNLRDSKQFSKALQVSEWMGEKQVCNLYLEDYAARLYLTENVLGLEEAEKYFENIPENMKDYSVYVALLSSYAKSDKNLGNMVDEILREMEENNVDPDLITVNHVLKVYAAESKIQAMEM 527          
BLAST of CK939508 vs. ExPASy Swiss-Prot
Match: PPR4_ARATH (Pentatricopeptide repeat-containing protein At1g02370, mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.081e-19
Identity = 57/165 (34.55%), Postives = 92/165 (55.76%), Query Frame = 2
Query:  239 DLKSRIFRISLPKRSAINVIQRWVSEGNQATVSELRRILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSE-TYTALLHSYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKR 730
            +L  ++  +S+   +    + +++ EG      +L R  K LRK +R +HA EI +WM   K    S SD+A  +DL+ K  G+ + E YF  L  SAK  + TY AL++ Y      EKA+  FE + + N   N+L +N MM++YM + Q EKV ++V+ +K+
Sbjct:   72 ELYKKLSMLSVTGGTVAETLNQFIMEGITVRKDDLFRCAKTLRKFRRPQHAFEIFDWMEKRK-MTFSVSDHAICLDLIGKTKGLEAAENYFNNLDPSAKNHQSTYGALMNCYCVELEEEKAKAHFEIMDELNFVNNSLPFNNMMSMYMRLSQPEKVPVLVDAMKQ 235          
BLAST of CK939508 vs. ExPASy Swiss-Prot
Match: PP300_ARATH (Pentatricopeptide repeat-containing protein At4g01990, mitochondrial OS=Arabidopsis thaliana GN=At4g01990 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.091e-19
Identity = 55/144 (38.19%), Postives = 81/144 (56.25%), Query Frame = 2
Query:  296 IQRWVSEGNQATVSELRRILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHSYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 727
            + ++V EG      +L R  K+LRK ++ + ALEI EWM   KE   + SD+A R++L+ K  G+ + E YF  L  S K   TY +LL+ Y   K   KA+  FE +   N   N+L +N +M +YM +GQ EKV  +V  +K
Sbjct:   60 LNQFVMEGVPVKKHDLIRYAKDLRKFRQPQRALEIFEWM-ERKEIAFTGSDHAIRLNLIAKSKGLEAAETYFNSLDDSIKNQSTYGSLLNCYCVEKEEVKAKAHFENMVDLNHVSNSLPFNNLMAMYMGLGQPEKVPALVVAMK 202          
BLAST of CK939508 vs. ExPASy Swiss-Prot
Match: PP135_ARATH (Pentatricopeptide repeat-containing protein At1g80270, mitochondrial OS=Arabidopsis thaliana GN=At1g80270 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.005e-17
Identity = 47/163 (28.83%), Postives = 92/163 (56.44%), Query Frame = 2
Query:  245 KSRIFR--ISLPKRSAINVIQRWVSEGNQATVSELRRILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLPLSAKTSETYTALLHSYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG--QVEKVALVVEE 721
            +S +F+  +S P  S  + + +WV EGN+ T  E+ + + +LR+ + Y  AL++SEW+  +K+  +++ DYA+R+DL  K+ G+  GE   + +P S K    Y  LL +   A   +K+E +F ++K      +    ++M+ L+  +   ++  V L++E+
Sbjct:  129 QSELFKTIVSAPGLSIGSALDKWVEEGNEITRVEIAKAMLQLRRRRMYGRALQMSEWLEANKKIEMTERDYASRLDLTVKIRGLEKGEACMQKIPKSFKGEVLYRTLLANCVAAGNVKKSELVFNKMKDLGFPLSGFTCDQMLLLHKRIDRKKIADVLLLMEK 291          
The following BLAST results are available for this feature:
BLAST of CK939508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
PP372_ARATH2.365e-5964.12Pentatricopeptide repeat-containing protein At5g09... [more]
PP302_ARATH4.062e-3542.77Pentatricopeptide repeat-containing protein At4g02... [more]
PP166_ARATH1.653e-2837.72Pentatricopeptide repeat-containing protein At2g20... [more]
PP334_ARATH5.317e-2738.82Pentatricopeptide repeat-containing protein At4g21... [more]
PPR3_ARATH2.731e-2339.13Pentatricopeptide repeat-containing protein At1g02... [more]
PP400_ARATH1.355e-2236.93Pentatricopeptide repeat-containing protein At5g27... [more]
PPR61_ARATH6.726e-2237.84Putative pentatricopeptide repeat-containing prote... [more]
PPR4_ARATH4.081e-1934.55Pentatricopeptide repeat-containing protein At1g02... [more]
PP300_ARATH9.091e-1938.19Pentatricopeptide repeat-containing protein At4g01... [more]
PP135_ARATH1.005e-1728.83Pentatricopeptide repeat-containing protein At1g80... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_E05 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939508 ID=CK939508; Name=CK939508; organism=Citrus sinensis; type=EST; length=734bp
GGGGAAACAAATTAGAATGTCTGCAGTGACTCAATGAGTCGCCCCAGTTA
ACACAACTGTAGAATTAGCAATGGCTGCTCGCTCATTTTTCCTCGGTCTA
AGACGAGCAAGCAACACAAAAATCAAGAACCGCCCTAATTCCGATTCCGA
GTCTTTCTTTCGTTCAAGATTTCTCTCTTCTGGATCTTCGCAAAACGAAT
GCCTCGACGAAGAGACTTCGAATTCGGATGGAAAGGATGATCTCAAATCC
AGAATCTTCAGAATTAGTCTGCCAAAACGTAGCGCAATTAACGTTATTCA
GAGGTGGGTCAGCGAAGGGAACCAAGCTACCGTGTCTGAGCTTCGACGCA
TCTTGAAAGAACTCAGAAAGTCTCAGCGTTACAAGCATGCCCTCGAGATA
TCTGAATGGATGGTTACTCATAAAGAGTTTGTGTTATCAGACTCTGACTA
TGCTACCCGTATTGACTTGATGACAAAAGTATTTGGTATTCATTCGGGTG
AGCGCTACTTTGAAGGGCTTCCTCTCTCGGCAAAAACTAGTGAAACATAC
ACTGCTCTCCTCCACTCGTATGCTGGGGCGAAATGGACCGAGAAGGCGGA
AGAGCTTTTTGAAAGAGTAAAGCAGTCAAACCTGTCCTTCAATGCCCTTA
TGTATAATGAGATGATGACTTTGTACATGTCAGTTGGACAAGTGGAAAAG
GTAGCCTTAGTTGTTGAAGAGATAAAGCGGNAGA
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