CK939496

Overview
NameCK939496
Unique NameCK939496
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length173
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939496 vs. ExPASy Swiss-Prot
Match: RR3_CITSI (30S ribosomal protein S3, chloroplastic OS=Citrus sinensis GN=rps3 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.890e-22
Identity = 47/49 (95.92%), Postives = 47/49 (95.92%), Query Frame = 1
Query:   25 MGQXXNPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKK 171
            MGQ  NPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKK
Sbjct:    1 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKK 49          
BLAST of CK939496 vs. ExPASy Swiss-Prot
Match: RR3_PANGI (30S ribosomal protein S3, chloroplastic OS=Panax ginseng GN=rps3 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.337e-19
Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = 1
Query:   25 MGQXXNPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKK 171
            MGQ  NPLGFRLGTTQ HHSLWFA+PKNY EGLQEDQKIR+FIKNY++K
Sbjct:    1 MGQKINPLGFRLGTTQGHHSLWFAQPKNYSEGLQEDQKIRDFIKNYVQK 49          
BLAST of CK939496 vs. ExPASy Swiss-Prot
Match: RR3_HELAN (30S ribosomal protein S3, chloroplastic OS=Helianthus annuus GN=rps3 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.337e-19
Identity = 40/49 (81.63%), Postives = 45/49 (91.84%), Query Frame = 1
Query:   25 MGQXXNPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKK 171
            MGQ  NP+GFRLGTTQ HHSLWFA+PKNY EGLQEDQKIRN+IKNY++K
Sbjct:    1 MGQKINPIGFRLGTTQGHHSLWFAQPKNYSEGLQEDQKIRNYIKNYVQK 49          
BLAST of CK939496 vs. ExPASy Swiss-Prot
Match: RR3_DAUCA (30S ribosomal protein S3, chloroplastic OS=Daucus carota GN=rps3 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.337e-19
Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = 1
Query:   25 MGQXXNPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKK 171
            MGQ  NPLGFRLGTTQSHHSLWF +PKNY EGLQEDQKIR+FIKNY++K
Sbjct:    1 MGQKINPLGFRLGTTQSHHSLWFTQPKNYSEGLQEDQKIRDFIKNYVQK 49          
BLAST of CK939496 vs. ExPASy Swiss-Prot
Match: RR3_IPOPU (30S ribosomal protein S3, chloroplastic OS=Ipomoea purpurea GN=rps3 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.708e-19
Identity = 40/49 (81.63%), Postives = 44/49 (89.80%), Query Frame = 1
Query:   25 MGQXXNPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKK 171
            MGQ  NPLGFRLGTTQ HHSLWF++PKNY E LQEDQKIRNFIKNY++K
Sbjct:    1 MGQKINPLGFRLGTTQGHHSLWFSQPKNYSESLQEDQKIRNFIKNYVQK 49          
BLAST of CK939496 vs. ExPASy Swiss-Prot
Match: RR3_AETGR (30S ribosomal protein S3, chloroplastic OS=Aethionema grandiflora GN=rps3 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.163e-18
Identity = 39/49 (79.59%), Postives = 45/49 (91.84%), Query Frame = 1
Query:   25 MGQXXNPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKK 171
            MGQ  NPLGFRLGTTQSHHSLWFA+PK YCEGL+ED+KIR+ IKNY++K
Sbjct:    1 MGQKINPLGFRLGTTQSHHSLWFAQPKKYCEGLEEDKKIRDCIKNYVQK 49          
BLAST of CK939496 vs. ExPASy Swiss-Prot
Match: RR3_AETCO (30S ribosomal protein S3, chloroplastic OS=Aethionema cordifolium GN=rps3 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.163e-18
Identity = 39/49 (79.59%), Postives = 45/49 (91.84%), Query Frame = 1
Query:   25 MGQXXNPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKK 171
            MGQ  NPLGFRLGTTQSHHSLWFA+PK YCEGL+ED+KIR+ IKNY++K
Sbjct:    1 MGQKINPLGFRLGTTQSHHSLWFAQPKKYCEGLEEDKKIRDCIKNYVQK 49          
BLAST of CK939496 vs. ExPASy Swiss-Prot
Match: RR3_EPIVI (Plastid 30S ribosomal protein S3 OS=Epifagus virginiana GN=rps3 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.825e-18
Identity = 39/48 (81.25%), Postives = 44/48 (91.67%), Query Frame = 1
Query:   25 MGQXXNPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIK 168
            MGQ  NPLGFRLGTTQSHHS WFA+PKNY +G+QEDQKIR+FIKNY+K
Sbjct:    1 MGQKINPLGFRLGTTQSHHSFWFAQPKNYYKGIQEDQKIRDFIKNYVK 48          
BLAST of CK939496 vs. ExPASy Swiss-Prot
Match: RR3_SORBI (30S ribosomal protein S3, chloroplastic OS=Sorghum bicolor GN=rps3 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.689e-18
Identity = 40/49 (81.63%), Postives = 44/49 (89.80%), Query Frame = 1
Query:   25 MGQXXNPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKK 171
            MGQ  NPLGFRLGTTQ+HHS WFA+PKNY EGLQED+KIRN IKNYI+K
Sbjct:    1 MGQKINPLGFRLGTTQNHHSFWFAQPKNYSEGLQEDKKIRNCIKNYIQK 49          
BLAST of CK939496 vs. ExPASy Swiss-Prot
Match: RR3_SACOF (30S ribosomal protein S3, chloroplastic OS=Saccharum officinarum GN=rps3 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.689e-18
Identity = 40/49 (81.63%), Postives = 44/49 (89.80%), Query Frame = 1
Query:   25 MGQXXNPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKK 171
            MGQ  NPLGFRLGTTQ+HHS WFA+PKNY EGLQED+KIRN IKNYI+K
Sbjct:    1 MGQKINPLGFRLGTTQNHHSFWFAQPKNYSEGLQEDKKIRNCIKNYIQK 49          
The following BLAST results are available for this feature:
BLAST of CK939496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
RR3_CITSI1.890e-2295.9230S ribosomal protein S3, chloroplastic OS=Citrus ... [more]
RR3_PANGI3.337e-1983.6730S ribosomal protein S3, chloroplastic OS=Panax g... [more]
RR3_HELAN3.337e-1981.6330S ribosomal protein S3, chloroplastic OS=Heliant... [more]
RR3_DAUCA3.337e-1983.6730S ribosomal protein S3, chloroplastic OS=Daucus ... [more]
RR3_IPOPU9.708e-1981.6330S ribosomal protein S3, chloroplastic OS=Ipomoea... [more]
RR3_AETGR2.163e-1879.5930S ribosomal protein S3, chloroplastic OS=Aethion... [more]
RR3_AETCO2.163e-1879.5930S ribosomal protein S3, chloroplastic OS=Aethion... [more]
RR3_EPIVI2.825e-1881.25Plastid 30S ribosomal protein S3 OS=Epifagus virgi... [more]
RR3_SORBI3.689e-1881.6330S ribosomal protein S3, chloroplastic OS=Sorghum... [more]
RR3_SACOF3.689e-1881.6330S ribosomal protein S3, chloroplastic OS=Sacchar... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_H07 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939496 ID=CK939496; Name=CK939496; organism=Citrus sinensis; type=EST; length=173bp
GGGGATACATATAAATGGGGGATTATGGGACAAANNNTAAATCCACTAGG
TTTCCGGCTTGGTACAACACAAAGTCATCATTCTCTTTGGTTTGCAAAAC
CAAAAAACTATTGCGAGGGTCTACAAGAAGATCAAAAAATACGAAACTTT
ATTAAGAATTATATAAAAAAAAA
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