CK939496
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939496 vs. ExPASy Swiss-Prot
Match: RR3_CITSI (30S ribosomal protein S3, chloroplastic OS=Citrus sinensis GN=rps3 PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 1.890e-22 Identity = 47/49 (95.92%), Postives = 47/49 (95.92%), Query Frame = 1 Query: 25 MGQXXNPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKK 171 MGQ NPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKK Sbjct: 1 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKK 49
BLAST of CK939496 vs. ExPASy Swiss-Prot
Match: RR3_PANGI (30S ribosomal protein S3, chloroplastic OS=Panax ginseng GN=rps3 PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 3.337e-19 Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = 1 Query: 25 MGQXXNPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKK 171 MGQ NPLGFRLGTTQ HHSLWFA+PKNY EGLQEDQKIR+FIKNY++K Sbjct: 1 MGQKINPLGFRLGTTQGHHSLWFAQPKNYSEGLQEDQKIRDFIKNYVQK 49
BLAST of CK939496 vs. ExPASy Swiss-Prot
Match: RR3_HELAN (30S ribosomal protein S3, chloroplastic OS=Helianthus annuus GN=rps3 PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 3.337e-19 Identity = 40/49 (81.63%), Postives = 45/49 (91.84%), Query Frame = 1 Query: 25 MGQXXNPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKK 171 MGQ NP+GFRLGTTQ HHSLWFA+PKNY EGLQEDQKIRN+IKNY++K Sbjct: 1 MGQKINPIGFRLGTTQGHHSLWFAQPKNYSEGLQEDQKIRNYIKNYVQK 49
BLAST of CK939496 vs. ExPASy Swiss-Prot
Match: RR3_DAUCA (30S ribosomal protein S3, chloroplastic OS=Daucus carota GN=rps3 PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 3.337e-19 Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = 1 Query: 25 MGQXXNPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKK 171 MGQ NPLGFRLGTTQSHHSLWF +PKNY EGLQEDQKIR+FIKNY++K Sbjct: 1 MGQKINPLGFRLGTTQSHHSLWFTQPKNYSEGLQEDQKIRDFIKNYVQK 49
BLAST of CK939496 vs. ExPASy Swiss-Prot
Match: RR3_IPOPU (30S ribosomal protein S3, chloroplastic OS=Ipomoea purpurea GN=rps3 PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 9.708e-19 Identity = 40/49 (81.63%), Postives = 44/49 (89.80%), Query Frame = 1 Query: 25 MGQXXNPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKK 171 MGQ NPLGFRLGTTQ HHSLWF++PKNY E LQEDQKIRNFIKNY++K Sbjct: 1 MGQKINPLGFRLGTTQGHHSLWFSQPKNYSESLQEDQKIRNFIKNYVQK 49
BLAST of CK939496 vs. ExPASy Swiss-Prot
Match: RR3_AETGR (30S ribosomal protein S3, chloroplastic OS=Aethionema grandiflora GN=rps3 PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 2.163e-18 Identity = 39/49 (79.59%), Postives = 45/49 (91.84%), Query Frame = 1 Query: 25 MGQXXNPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKK 171 MGQ NPLGFRLGTTQSHHSLWFA+PK YCEGL+ED+KIR+ IKNY++K Sbjct: 1 MGQKINPLGFRLGTTQSHHSLWFAQPKKYCEGLEEDKKIRDCIKNYVQK 49
BLAST of CK939496 vs. ExPASy Swiss-Prot
Match: RR3_AETCO (30S ribosomal protein S3, chloroplastic OS=Aethionema cordifolium GN=rps3 PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 2.163e-18 Identity = 39/49 (79.59%), Postives = 45/49 (91.84%), Query Frame = 1 Query: 25 MGQXXNPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKK 171 MGQ NPLGFRLGTTQSHHSLWFA+PK YCEGL+ED+KIR+ IKNY++K Sbjct: 1 MGQKINPLGFRLGTTQSHHSLWFAQPKKYCEGLEEDKKIRDCIKNYVQK 49
BLAST of CK939496 vs. ExPASy Swiss-Prot
Match: RR3_EPIVI (Plastid 30S ribosomal protein S3 OS=Epifagus virginiana GN=rps3 PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 2.825e-18 Identity = 39/48 (81.25%), Postives = 44/48 (91.67%), Query Frame = 1 Query: 25 MGQXXNPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIK 168 MGQ NPLGFRLGTTQSHHS WFA+PKNY +G+QEDQKIR+FIKNY+K Sbjct: 1 MGQKINPLGFRLGTTQSHHSFWFAQPKNYYKGIQEDQKIRDFIKNYVK 48
BLAST of CK939496 vs. ExPASy Swiss-Prot
Match: RR3_SORBI (30S ribosomal protein S3, chloroplastic OS=Sorghum bicolor GN=rps3 PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 3.689e-18 Identity = 40/49 (81.63%), Postives = 44/49 (89.80%), Query Frame = 1 Query: 25 MGQXXNPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKK 171 MGQ NPLGFRLGTTQ+HHS WFA+PKNY EGLQED+KIRN IKNYI+K Sbjct: 1 MGQKINPLGFRLGTTQNHHSFWFAQPKNYSEGLQEDKKIRNCIKNYIQK 49
BLAST of CK939496 vs. ExPASy Swiss-Prot
Match: RR3_SACOF (30S ribosomal protein S3, chloroplastic OS=Saccharum officinarum GN=rps3 PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 3.689e-18 Identity = 40/49 (81.63%), Postives = 44/49 (89.80%), Query Frame = 1 Query: 25 MGQXXNPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKK 171 MGQ NPLGFRLGTTQ+HHS WFA+PKNY EGLQED+KIRN IKNYI+K Sbjct: 1 MGQKINPLGFRLGTTQNHHSFWFAQPKNYSEGLQEDKKIRNCIKNYIQK 49 The following BLAST results are available for this feature:
BLAST of CK939496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 85
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939496 ID=CK939496; Name=CK939496; organism=Citrus sinensis; type=EST; length=173bpback to top |